Wall clock time and date at job start Tue Mar 31 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 120.00523 * 2 1 4 4 H 1.48503 * 109.47233 * 270.00291 * 3 2 1 5 5 H 1.48508 * 109.46785 * 29.99706 * 3 2 1 6 6 H 1.48493 * 109.47421 * 149.99792 * 3 2 1 7 7 C 1.40031 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.41336 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.40616 * 119.78626 * 179.97438 * 9 7 2 11 11 C 1.38306 * 119.12947 * 179.77224 * 10 9 7 12 12 C 1.38706 * 118.66428 * 0.52010 * 11 10 9 13 13 C 1.39629 * 119.49410 * 359.45782 * 12 11 10 14 14 N 1.39271 * 119.56827 * 180.27923 * 13 12 11 15 15 C 1.34781 * 120.00051 * 174.62535 * 14 13 12 16 16 O 1.21281 * 119.99713 * 5.13212 * 15 14 13 17 17 C 1.50694 * 120.00544 * 185.13280 * 15 14 13 18 18 H 1.09006 * 109.67228 * 60.49653 * 17 15 14 19 19 C 1.53335 * 109.67811 * 181.03125 * 17 15 14 20 20 C 1.52935 * 108.66528 * 187.27645 * 19 17 15 21 21 N 1.45753 * 110.48242 * 309.21962 * 20 19 17 22 22 C 1.33353 * 124.10246 * 19.11035 * 21 20 19 23 23 O 1.21285 * 118.24509 * 177.73005 * 22 21 20 24 24 C 1.50173 * 123.51020 * 357.75381 * 22 21 20 25 25 N 1.31924 * 120.85413 * 0.29842 * 13 12 11 26 26 H 0.97002 * 119.99967 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.43637 * 0.02562 * 10 9 7 28 28 H 1.07993 * 120.67145 * 180.27502 * 11 10 9 29 29 H 1.08001 * 120.24561 * 179.73224 * 12 11 10 30 30 H 0.97001 * 120.00381 * 354.62339 * 14 13 12 31 31 H 1.09004 * 109.60581 * 307.02247 * 19 17 15 32 32 H 1.09003 * 109.60307 * 67.50663 * 19 17 15 33 33 H 1.09003 * 109.29593 * 188.91822 * 20 19 17 34 34 H 1.08996 * 109.14840 * 69.43241 * 20 19 17 35 35 H 0.96994 * 117.95051 * 199.08759 * 21 20 19 36 36 H 1.09000 * 109.40524 * 257.45498 * 24 22 21 37 37 H 1.09004 * 109.40073 * 137.71301 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3007 -2.4367 -0.0005 10 6 2.0083 -3.6519 -0.0016 11 6 1.3030 -4.8416 0.0032 12 6 -0.0832 -4.7933 -0.0021 13 6 -0.7280 -3.5548 -0.0006 14 7 -2.1198 -3.5045 0.0000 15 6 -2.7513 -2.3190 0.1108 16 8 -2.1109 -1.2890 0.1163 17 6 -4.2529 -2.2731 0.2280 18 1 -4.5681 -2.8134 1.1207 19 6 -4.7198 -0.8151 0.3144 20 6 -6.2193 -0.7983 0.6146 21 7 -6.9355 -1.6609 -0.3167 22 6 -6.3603 -2.6253 -1.0360 23 8 -7.0654 -3.3083 -1.7483 24 6 -4.8862 -2.9112 -1.0109 25 7 -0.0358 -2.4317 -0.0001 26 1 -0.4850 0.8401 -0.0004 27 1 3.0883 -3.6561 -0.0021 28 1 1.8211 -5.7891 0.0069 29 1 -0.6594 -5.7068 -0.0029 30 1 -2.6347 -4.3227 -0.0793 31 1 -4.1812 -0.3054 1.1134 32 1 -4.5309 -0.3137 -0.6348 33 1 -6.5937 0.2212 0.5220 34 1 -6.3842 -1.1515 1.6324 35 1 -7.8904 -1.5252 -0.4195 36 1 -4.4222 -2.4998 -1.9073 37 1 -4.7269 -3.9892 -0.9845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:28 Heat of formation + Delta-G solvation = -44.585951 kcal Electronic energy + Delta-G solvation = -22888.753564 eV Core-core repulsion = 19437.435347 eV Total energy + Delta-G solvation = -3451.318217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65952 -40.65311 -39.31166 -37.25138 -35.90019 -34.85877 -34.07925 -32.19286 -30.99101 -30.47108 -27.54767 -26.31153 -24.49815 -23.44600 -22.79075 -20.93057 -20.12544 -19.57231 -18.44921 -17.96942 -17.59497 -17.08458 -16.45148 -16.28699 -16.25149 -15.89004 -15.51133 -15.25323 -14.78003 -14.73745 -14.50246 -14.39278 -13.76871 -13.66854 -12.89199 -12.81405 -12.72980 -12.62435 -12.54859 -12.30840 -12.05088 -12.00109 -11.75534 -11.46980 -11.21663 -10.84062 -10.46011 -10.06620 -9.87443 -9.06894 -8.79689 -8.03894 -6.39952 0.93238 1.26439 1.41822 1.52346 1.55057 1.55941 2.12295 2.28094 2.31733 2.33318 3.00751 3.48296 3.66666 3.73527 3.81237 4.07565 4.22891 4.26390 4.41600 4.43525 4.63177 4.75048 4.77293 4.85546 4.96527 4.97662 5.06444 5.08897 5.27637 5.32318 5.70051 5.83425 5.87107 5.94892 6.17772 6.28664 6.38818 6.76575 6.85634 7.10502 7.17505 7.70974 8.35967 8.58432 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.005143 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.248964 B = 5442.981875 C = 6826.484403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.467 4.467 8 H 0.083 0.917 9 C 0.237 3.763 10 C -0.331 4.331 11 C -0.035 4.035 12 C -0.348 4.348 13 C 0.349 3.651 14 N -0.655 5.655 15 C 0.469 3.531 16 O -0.453 6.453 17 C -0.092 4.092 18 H 0.126 0.874 19 C -0.116 4.116 20 C 0.117 3.883 21 N -0.707 5.707 22 C 0.527 3.473 23 O -0.603 6.603 24 C -0.121 4.121 25 N -0.505 5.505 26 H 0.272 0.728 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.419 0.581 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.094 0.906 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 -0.870 3.092 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.212 4.212 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.101 0.899 9 C 0.112 3.888 10 C -0.354 4.354 11 C -0.060 4.060 12 C -0.373 4.373 13 C 0.111 3.889 14 N -0.304 5.304 15 C 0.253 3.747 16 O -0.319 6.319 17 C -0.113 4.113 18 H 0.143 0.857 19 C -0.154 4.154 20 C -0.007 4.007 21 N -0.358 5.358 22 C 0.315 3.685 23 O -0.486 6.486 24 C -0.161 4.161 25 N -0.225 5.225 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.256 0.744 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.112 0.888 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.866 0.535 2.811 13.180 hybrid contribution 0.618 -0.554 -0.206 0.855 sum -12.248 -0.020 2.604 12.522 Atomic orbital electron populations 1.70490 1.07091 1.28035 1.25015 1.26961 0.96069 1.03716 0.94433 0.85361 0.79158 0.77061 0.79033 1.19305 1.19516 1.18271 1.19887 0.94387 0.90563 1.44937 0.89905 1.18859 0.88092 0.93258 0.88624 1.21805 0.99135 0.93948 1.20519 1.21027 0.93680 0.97255 0.93994 1.20994 0.95154 0.95922 1.25258 1.19152 0.85378 0.90972 0.93437 1.43458 1.03446 1.10722 1.72816 1.21447 0.90703 0.84124 0.78469 1.91160 1.66754 1.32380 1.41609 1.21415 0.89729 0.99731 1.00450 0.85659 1.21677 0.95544 0.94232 1.03941 1.21591 0.90251 0.95675 0.93137 1.45458 1.13187 1.34198 1.42976 1.20090 0.90649 0.79262 0.78538 1.90746 1.64388 1.50231 1.43212 1.21594 0.90936 1.04378 0.99225 1.68662 1.07158 1.25269 1.21378 0.91735 0.88000 0.84800 0.85176 0.74363 0.89368 0.91981 0.87581 0.88968 0.75582 0.88790 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -38.06 9.00 21.84 0.20 -37.87 16 2 C 0.01 0.74 5.50 85.29 0.47 1.21 16 3 Si 0.97 39.76 29.56 68.60 2.03 41.79 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.47 -26.31 9.14 23.47 0.21 -26.10 16 8 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 9 C 0.24 13.55 6.55 40.21 0.26 13.82 16 10 C -0.33 -16.69 9.83 22.87 0.22 -16.46 16 11 C -0.04 -1.53 10.15 22.40 0.23 -1.31 16 12 C -0.35 -14.63 9.95 22.72 0.23 -14.41 16 13 C 0.35 16.41 7.43 133.23 0.99 17.40 16 14 N -0.66 -23.58 5.31 -308.38 -1.64 -25.22 16 15 C 0.47 16.91 7.09 87.65 0.62 17.53 16 16 O -0.45 -21.39 11.67 -3.03 -0.04 -21.42 16 17 C -0.09 -2.11 2.61 -11.41 -0.03 -2.14 16 18 H 0.13 2.24 8.13 -2.38 -0.02 2.22 16 19 C -0.12 -2.44 4.71 30.68 0.14 -2.30 16 20 C 0.12 1.49 7.17 86.50 0.62 2.11 16 21 N -0.71 -11.66 5.45 -467.30 -2.55 -14.20 16 22 C 0.53 12.37 7.71 87.71 0.68 13.05 16 23 O -0.60 -19.08 17.78 -3.04 -0.05 -19.13 16 24 C -0.12 -2.70 5.16 29.71 0.15 -2.55 16 25 N -0.50 -28.26 5.74 -186.37 -1.07 -29.33 16 26 H 0.27 14.03 8.29 -92.71 -0.77 13.26 16 27 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.42 11.02 8.25 -92.71 -0.76 10.25 16 31 H 0.09 2.09 7.89 -2.38 -0.02 2.07 16 32 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.41 5.55 8.80 -92.71 -0.82 4.73 16 36 H 0.09 2.38 8.09 -2.39 -0.02 2.36 16 37 H 0.12 2.28 7.82 -2.38 -0.02 2.26 16 Total: -1.00 -77.55 312.53 1.23 -76.33 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.46 Total: 29.21 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 4.80 Total: -0.15 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -5.06 Total: -106.62 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.09 Total: -40.55 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -77.55 1.23 -76.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.740 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds