Wall clock time and date at job start Tue Mar 31 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 N 1.46499 * 109.46952 * 179.97438 * 17 15 14 19 19 C 1.46755 * 124.35066 * 269.72306 * 18 17 15 20 20 C 1.54658 * 105.38387 * 162.85127 * 19 18 17 21 21 C 1.54625 * 101.68284 * 25.77181 * 20 19 18 22 22 C 1.34419 * 124.34866 * 90.01939 * 18 17 15 23 23 O 1.21287 * 124.94383 * 0.43535 * 22 18 17 24 24 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 25 25 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 26 26 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 27 27 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 28 28 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 29 29 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 30 30 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 31 31 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 32 32 H 1.09003 * 110.24781 * 281.98539 * 19 18 17 33 33 H 1.09002 * 110.24531 * 43.98597 * 19 18 17 34 34 H 1.08998 * 111.19926 * 267.59021 * 20 19 18 35 35 H 1.09010 * 110.82146 * 143.77721 * 20 19 18 36 36 H 1.09003 * 110.48787 * 216.30902 * 21 20 19 37 37 H 1.09001 * 110.60296 * 93.72192 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 7 9.2251 2.3518 2.1422 19 6 10.1375 1.7084 3.0946 20 6 11.4635 1.5114 2.3234 21 6 11.3801 2.6355 1.2649 22 6 9.8968 2.8890 1.1092 23 8 9.3879 3.4900 0.1868 24 7 3.9627 -0.1379 0.8260 25 1 -0.4849 -0.8367 -0.0743 26 1 3.6505 -3.3070 -0.2314 27 1 6.0600 -3.3167 0.3599 28 1 7.0783 -1.2412 1.2628 29 1 5.2413 1.7380 2.0256 30 1 7.3876 3.3159 1.8351 31 1 7.5194 2.4087 3.3610 32 1 10.2937 2.3514 3.9608 33 1 9.7376 0.7438 3.4073 34 1 11.5017 0.5308 1.8490 35 1 12.3201 1.6582 2.9815 36 1 11.8114 2.3032 0.3206 37 1 11.8857 3.5339 1.6189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882476598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:32 Heat of formation + Delta-G solvation = -34.099003 kcal Electronic energy + Delta-G solvation = -22544.767665 eV Core-core repulsion = 19093.904196 eV Total energy + Delta-G solvation = -3450.863469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.78701 -39.75750 -38.05568 -36.46960 -34.58604 -33.56618 -33.05193 -31.08841 -29.79270 -27.76578 -27.54454 -25.31683 -22.63622 -22.09564 -21.74755 -20.17454 -19.50561 -18.40701 -17.61124 -17.15220 -16.53890 -16.21316 -15.63224 -15.18378 -14.96052 -14.40727 -14.01685 -13.90288 -13.84886 -13.57876 -13.26938 -13.01260 -12.76296 -12.64420 -12.23492 -12.16419 -11.86369 -11.69043 -11.29029 -11.20029 -10.87867 -10.33611 -10.00544 -9.94058 -9.79858 -9.51380 -9.09444 -8.79577 -8.52976 -7.92137 -7.43409 -7.28569 -4.77223 2.17144 2.36287 2.65750 2.71419 3.00375 3.38236 3.48377 3.61771 3.91051 4.13081 4.23537 4.32837 4.57948 4.58483 4.74453 4.79668 4.90973 5.09194 5.21722 5.29843 5.46004 5.53108 5.56045 5.75687 5.84284 6.06662 6.17595 6.45229 6.51427 6.54091 6.90436 7.12404 7.17817 7.42781 7.55105 7.58896 7.76173 8.01949 8.10646 8.27039 8.41446 8.64442 9.42729 9.96642 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.004302 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.955502 B = 6506.608742 C = 7190.843335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.050 3.950 3 Si 1.142 2.858 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.325 1.325 7 C -0.481 4.481 8 H 0.084 0.916 9 C 0.275 3.725 10 C -0.277 4.277 11 C -0.037 4.037 12 C -0.311 4.311 13 C 0.383 3.617 14 N -0.654 5.654 15 C 0.495 3.505 16 O -0.503 6.503 17 C 0.110 3.890 18 N -0.604 5.604 19 C 0.104 3.896 20 C -0.130 4.130 21 C -0.152 4.152 22 C 0.521 3.479 23 O -0.528 6.528 24 N -0.595 5.595 25 H 0.284 0.716 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.615 5.182 9.061 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.172 4.172 3 Si 0.975 3.025 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.258 1.258 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.150 3.850 10 C -0.299 4.299 11 C -0.061 4.061 12 C -0.336 4.336 13 C 0.152 3.848 14 N -0.299 5.299 15 C 0.280 3.720 16 O -0.377 6.377 17 C -0.017 4.017 18 N -0.338 5.338 19 C -0.018 4.018 20 C -0.168 4.168 21 C -0.192 4.192 22 C 0.309 3.691 23 O -0.403 6.403 24 N -0.320 5.320 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.154 0.846 29 H 0.243 0.757 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.017 7.183 8.375 21.127 hybrid contribution 0.035 -2.429 0.045 2.430 sum 18.052 4.754 8.419 20.478 Atomic orbital electron populations 1.70617 1.08260 1.33037 1.30568 1.27651 0.95209 1.05935 0.88423 0.82154 0.72857 0.70089 0.77421 1.21453 1.20730 1.25784 1.20669 0.93160 0.97032 1.40437 0.89801 1.18183 0.92944 0.86033 0.87794 1.21618 0.94641 0.99843 1.13825 1.20907 0.94354 0.96304 0.94561 1.21472 1.01661 0.92951 1.17474 1.18081 0.89723 0.84458 0.92522 1.43270 1.07105 1.19615 1.59958 1.21140 0.81874 0.88303 0.80672 1.90627 1.61531 1.43374 1.42172 1.21174 0.80248 0.97707 1.02535 1.47788 1.04963 1.56595 1.24475 1.22148 0.89541 0.98458 0.91699 1.22607 0.97022 0.99567 0.97558 1.22290 0.94022 1.00782 1.02109 1.20953 0.89826 0.77473 0.80802 1.90751 1.74804 1.41836 1.32941 1.66198 1.10209 1.30273 1.25277 0.90435 0.87705 0.87707 0.84631 0.75709 0.86657 0.86780 0.90798 0.90057 0.89609 0.89198 0.87957 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.85 13.65 55.55 0.76 -21.09 16 2 C 0.05 1.36 5.51 -17.34 -0.10 1.26 16 3 Si 1.14 27.94 25.93 -169.99 -4.41 23.54 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -7.14 6.55 56.52 0.37 -6.77 16 6 H -0.33 -7.84 7.11 56.52 0.40 -7.43 16 7 C -0.48 -13.20 9.51 -37.74 -0.36 -13.56 16 8 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 9 C 0.27 7.31 6.27 -85.00 -0.53 6.77 16 10 C -0.28 -6.71 9.83 -38.66 -0.38 -7.09 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.31 -7.09 8.83 -38.89 -0.34 -7.43 16 13 C 0.38 8.88 7.51 -154.96 -1.16 7.72 16 14 N -0.65 -12.02 5.41 -11.40 -0.06 -12.08 16 15 C 0.50 8.23 7.74 -10.98 -0.09 8.14 16 16 O -0.50 -10.03 13.23 5.57 0.07 -9.96 16 17 C 0.11 1.25 6.42 -5.19 -0.03 1.22 16 18 N -0.60 -6.88 2.42 -173.67 -0.42 -7.30 16 19 C 0.10 0.79 7.35 -3.03 -0.02 0.77 16 20 C -0.13 -0.84 7.19 -25.01 -0.18 -1.02 16 21 C -0.15 -1.27 6.86 -26.74 -0.18 -1.46 16 22 C 0.52 6.95 8.02 -10.86 -0.09 6.87 16 23 O -0.53 -9.48 17.59 5.55 0.10 -9.38 16 24 N -0.59 -15.24 5.08 -10.26 -0.05 -15.29 16 25 H 0.28 7.40 8.73 -40.82 -0.36 7.04 16 26 H 0.10 2.37 8.06 -52.48 -0.42 1.94 16 27 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.14 3.00 5.33 -52.50 -0.28 2.72 16 29 H 0.41 6.37 8.83 -40.82 -0.36 6.01 16 30 H 0.12 1.27 7.92 -51.93 -0.41 0.86 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -35.34 317.24 -7.56 -42.90 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.46 Total: 2.92 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -3.86 Total: 0.97 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.22 Total: -55.77 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 27.94 SS G_CDS: -4.41 Total: 23.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.34 -7.56 -42.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.799 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds