Wall clock time and date at job start Tue Mar 31 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 N 1.46499 * 109.46952 * 179.97438 * 17 15 14 19 19 C 1.46755 * 124.35066 * 269.72306 * 18 17 15 20 20 C 1.54658 * 105.38387 * 162.85127 * 19 18 17 21 21 C 1.54625 * 101.68284 * 25.77181 * 20 19 18 22 22 C 1.34419 * 124.34866 * 90.01939 * 18 17 15 23 23 O 1.21287 * 124.94383 * 0.43535 * 22 18 17 24 24 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 25 25 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 26 26 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 27 27 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 28 28 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 29 29 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 30 30 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 31 31 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 32 32 H 1.09003 * 110.24781 * 281.98539 * 19 18 17 33 33 H 1.09002 * 110.24531 * 43.98597 * 19 18 17 34 34 H 1.08998 * 111.19926 * 267.59021 * 20 19 18 35 35 H 1.09010 * 110.82146 * 143.77721 * 20 19 18 36 36 H 1.09003 * 110.48787 * 216.30902 * 21 20 19 37 37 H 1.09001 * 110.60296 * 93.72192 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 7 9.2251 2.3518 2.1422 19 6 10.1375 1.7084 3.0946 20 6 11.4635 1.5114 2.3234 21 6 11.3801 2.6355 1.2649 22 6 9.8968 2.8890 1.1092 23 8 9.3879 3.4900 0.1868 24 7 3.9627 -0.1379 0.8260 25 1 -0.4849 -0.8367 -0.0743 26 1 3.6505 -3.3070 -0.2314 27 1 6.0600 -3.3167 0.3599 28 1 7.0783 -1.2412 1.2628 29 1 5.2413 1.7380 2.0256 30 1 7.3876 3.3159 1.8351 31 1 7.5194 2.4087 3.3610 32 1 10.2937 2.3514 3.9608 33 1 9.7376 0.7438 3.4073 34 1 11.5017 0.5308 1.8490 35 1 12.3201 1.6582 2.9815 36 1 11.8114 2.3032 0.3206 37 1 11.8857 3.5339 1.6189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:30 Heat of formation + Delta-G solvation = -58.348322 kcal Electronic energy + Delta-G solvation = -22545.819194 eV Core-core repulsion = 19093.904196 eV Total energy + Delta-G solvation = -3451.914999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95303 -41.07819 -39.74065 -37.44847 -36.27724 -35.40804 -33.92653 -32.98237 -31.50033 -28.68600 -28.44041 -27.20924 -24.14941 -23.58733 -22.75677 -21.71256 -20.65686 -20.24805 -19.01287 -18.35632 -17.50269 -17.46636 -16.93567 -16.70003 -16.46212 -16.06847 -15.56179 -15.30456 -14.91895 -14.72789 -14.62483 -14.40109 -14.25170 -13.81155 -13.77415 -13.39343 -13.14907 -12.98199 -12.73326 -12.27451 -12.21134 -11.88762 -11.86891 -11.61778 -11.08047 -10.95860 -10.92350 -10.43102 -9.88291 -9.79333 -9.34751 -9.24367 -6.82457 0.47056 0.73748 1.31425 1.47861 1.49936 1.69836 1.80016 1.94872 2.18737 2.37040 2.60993 3.42986 3.49240 3.56602 3.66629 4.06616 4.08855 4.13670 4.22260 4.27726 4.39349 4.63462 4.66802 4.69614 4.73580 4.76579 4.90573 5.10544 5.26328 5.32241 5.35172 5.40750 5.41910 5.69341 5.79773 5.92590 6.05626 6.25954 6.39718 6.62647 6.97999 7.09245 7.50666 7.91045 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.004302 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.955502 B = 6506.608742 C = 7190.843335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.024 3.976 3 Si 1.172 2.828 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.321 1.321 7 C -0.513 4.513 8 H 0.070 0.930 9 C 0.258 3.742 10 C -0.295 4.295 11 C -0.031 4.031 12 C -0.309 4.309 13 C 0.372 3.628 14 N -0.651 5.651 15 C 0.495 3.505 16 O -0.539 6.539 17 C 0.114 3.886 18 N -0.606 5.606 19 C 0.097 3.903 20 C -0.121 4.121 21 C -0.146 4.146 22 C 0.503 3.497 23 O -0.588 6.588 24 N -0.608 5.608 25 H 0.283 0.717 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.421 0.579 30 H 0.120 0.880 31 H 0.165 0.835 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.587 5.972 11.267 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.194 4.194 3 Si 1.003 2.997 4 H -0.192 1.192 5 H -0.227 1.227 6 H -0.253 1.253 7 C -0.545 4.545 8 H 0.088 0.912 9 C 0.133 3.867 10 C -0.317 4.317 11 C -0.055 4.055 12 C -0.333 4.333 13 C 0.140 3.860 14 N -0.298 5.298 15 C 0.282 3.718 16 O -0.414 6.414 17 C -0.012 4.012 18 N -0.338 5.338 19 C -0.024 4.024 20 C -0.158 4.158 21 C -0.186 4.186 22 C 0.293 3.707 23 O -0.469 6.469 24 N -0.333 5.333 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.258 0.742 30 H 0.138 0.862 31 H 0.182 0.818 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.010 7.971 10.650 24.868 hybrid contribution -0.664 -2.755 -0.606 2.898 sum 20.346 5.216 10.044 23.282 Atomic orbital electron populations 1.70632 1.08466 1.32984 1.32561 1.28365 0.95468 1.07553 0.88011 0.81744 0.71223 0.68496 0.78261 1.19217 1.22714 1.25298 1.20670 0.94138 0.96822 1.42915 0.91210 1.18382 0.93028 0.87356 0.87936 1.21787 0.95607 0.99616 1.14657 1.21321 0.93796 0.97569 0.92828 1.21836 1.02149 0.93014 1.16267 1.18491 0.89142 0.86376 0.91979 1.43379 1.08104 1.18636 1.59685 1.22219 0.80803 0.89193 0.79582 1.90591 1.62012 1.45189 1.43645 1.21358 0.80319 0.94771 1.04749 1.48081 1.05223 1.55835 1.24664 1.22497 0.89009 0.98842 0.92017 1.22659 0.97958 0.98001 0.97227 1.22354 0.90578 1.02757 1.02880 1.21911 0.92075 0.76554 0.80165 1.90709 1.76325 1.44588 1.35249 1.66183 1.11453 1.30135 1.25554 0.90625 0.86772 0.84006 0.83525 0.74156 0.86183 0.81794 0.87149 0.90394 0.90926 0.85415 0.88350 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.81 13.65 21.84 0.30 -45.51 16 2 C 0.02 1.33 5.51 85.29 0.47 1.80 16 3 Si 1.17 56.88 25.93 68.60 1.78 58.66 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.30 -15.27 6.55 99.48 0.65 -14.62 16 6 H -0.32 -15.14 7.11 99.48 0.71 -14.43 16 7 C -0.51 -28.98 9.51 23.47 0.22 -28.76 16 8 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 9 C 0.26 13.86 6.27 40.21 0.25 14.12 16 10 C -0.29 -14.18 9.83 22.87 0.22 -13.96 16 11 C -0.03 -1.33 10.15 22.40 0.23 -1.10 16 12 C -0.31 -13.54 8.83 22.71 0.20 -13.34 16 13 C 0.37 16.80 7.51 133.23 1.00 17.80 16 14 N -0.65 -22.75 5.41 -308.38 -1.67 -24.42 16 15 C 0.49 15.42 7.74 87.66 0.68 16.10 16 16 O -0.54 -20.64 13.23 -2.99 -0.04 -20.68 16 17 C 0.11 2.26 6.42 85.63 0.55 2.81 16 18 N -0.61 -12.08 2.42 -821.96 -1.99 -14.07 16 19 C 0.10 1.07 7.35 86.90 0.64 1.71 16 20 C -0.12 -1.10 7.19 31.71 0.23 -0.87 16 21 C -0.15 -2.06 6.86 30.59 0.21 -1.85 16 22 C 0.50 12.65 8.02 87.90 0.71 13.35 16 23 O -0.59 -21.18 17.59 -3.05 -0.05 -21.24 16 24 N -0.61 -30.93 5.08 -186.36 -0.95 -31.87 16 25 H 0.28 15.23 8.73 -92.71 -0.81 14.42 16 26 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 27 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 28 H 0.15 6.18 5.33 -3.19 -0.02 6.16 16 29 H 0.42 12.27 8.83 -92.70 -0.82 11.45 16 30 H 0.12 2.36 7.92 -2.38 -0.02 2.34 16 31 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -79.62 317.24 3.18 -76.44 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.20 Total: 14.86 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.61 Total: 7.82 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -4.31 Total: -115.86 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.09 Total: -41.92 kcal Atomic # 14 Polarization: 56.88 SS G_CDS: 1.78 Total: 58.66 kcal Total: -79.62 3.18 -76.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.090 kcal (2) G-P(sol) polarization free energy of solvation -79.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds