Wall clock time and date at job start Tue Mar 31 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86793 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47523 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46879 * 120.00284 * 3 2 1 6 6 H 1.48503 * 109.47121 * 239.99897 * 3 2 1 7 7 C 1.40024 * 119.99454 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00934 * 1.90632 * 7 2 1 9 9 C 1.41346 * 119.99563 * 181.90894 * 7 2 1 10 10 C 1.40610 * 119.78713 * 187.00324 * 9 7 2 11 11 C 1.38308 * 119.13069 * 179.76895 * 10 9 7 12 12 C 1.38699 * 118.66233 * 0.49463 * 11 10 9 13 13 C 1.39629 * 119.49825 * 359.74596 * 12 11 10 14 14 N 1.39272 * 119.57314 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99903 * 18.88745 * 14 13 12 16 16 O 1.21272 * 119.99747 * 5.60432 * 15 14 13 17 17 C 1.50697 * 119.99770 * 185.60334 * 15 14 13 18 18 N 1.46508 * 109.47092 * 180.02562 * 17 15 14 19 19 C 1.34773 * 120.00000 * 180.02562 * 18 17 15 20 20 O 1.21278 * 120.00002 * 359.97438 * 19 18 17 21 21 C 1.50704 * 119.99901 * 179.97438 * 19 18 17 22 22 C 1.52996 * 117.50032 * 248.74785 * 21 19 18 23 23 C 1.52999 * 117.49919 * 180.08418 * 21 19 18 24 24 N 1.31923 * 120.85423 * 0.02562 * 13 12 11 25 25 H 0.96998 * 119.99961 * 174.82634 * 1 2 3 26 26 H 1.08005 * 120.43766 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.66880 * 180.22146 * 11 10 9 28 28 H 1.08004 * 120.24720 * 179.77102 * 12 11 10 29 29 H 0.96997 * 120.00116 * 198.88838 * 14 13 12 30 30 H 1.09003 * 109.47399 * 299.99765 * 17 15 14 31 31 H 1.08999 * 109.47436 * 60.00523 * 17 15 14 32 32 H 0.97000 * 119.99475 * 0.02562 * 18 17 15 33 33 H 1.09001 * 115.54568 * 34.41398 * 21 19 18 34 34 H 1.09003 * 117.49610 * 359.97438 * 22 21 19 35 35 H 1.08990 * 117.50018 * 145.02003 * 22 21 19 36 36 H 1.09001 * 117.49513 * 214.97589 * 23 21 19 37 37 H 1.08996 * 117.49991 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7465 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 1.4680 -2.1478 -0.0321 9 6 3.4204 -1.2131 0.0402 10 6 4.1232 -2.4218 -0.1090 11 6 5.5057 -2.4058 -0.0718 12 6 6.1520 -1.1941 0.1228 13 6 5.3976 -0.0283 0.2697 14 7 6.0449 1.1891 0.4656 15 6 7.3466 1.3202 0.1412 16 8 7.9273 0.4120 -0.4144 17 6 8.0801 2.5951 0.4689 18 7 9.4697 2.4889 0.0172 19 6 10.3202 3.5172 0.2063 20 8 9.9351 4.5305 0.7500 21 6 11.7498 3.4077 -0.2577 22 6 12.8373 3.3321 0.8158 23 6 12.6662 4.6081 -0.0123 24 7 4.0796 -0.0654 0.2263 25 1 -0.4850 -0.8366 -0.0757 26 1 3.5905 -3.3501 -0.2542 27 1 6.0705 -3.3191 -0.1873 28 1 7.2306 -1.1526 0.1599 29 1 5.5591 1.9427 0.8355 30 1 7.5974 3.4321 -0.0358 31 1 8.0595 2.7596 1.5462 32 1 9.7776 1.6785 -0.4179 33 1 11.9047 2.8349 -1.1721 34 1 12.5187 3.3620 1.8578 35 1 13.7077 2.7100 0.6076 36 1 13.4242 4.8248 -0.7651 37 1 12.2349 5.4772 0.4844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882477368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:33 Heat of formation + Delta-G solvation = -38.645978 kcal Electronic energy + Delta-G solvation = -21803.227002 eV Core-core repulsion = 18352.166361 eV Total energy + Delta-G solvation = -3451.060641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93410 -40.92514 -39.90414 -37.16729 -36.42225 -35.56388 -35.42316 -33.02535 -31.74429 -29.45837 -27.27624 -25.25733 -23.77894 -23.47505 -23.26198 -21.64781 -21.21129 -20.32276 -19.23888 -18.61583 -17.72852 -17.22940 -17.04761 -16.91697 -16.46949 -16.07235 -15.77713 -15.47501 -15.31723 -14.88122 -14.72203 -14.38846 -14.23418 -13.83762 -13.64836 -13.51888 -12.97685 -12.70060 -12.41361 -12.27104 -11.81811 -11.64640 -11.53394 -11.45141 -11.16705 -11.04631 -10.90899 -10.44288 -10.30627 -9.77802 -9.29062 -9.26590 -6.84348 0.42715 0.70927 1.37534 1.43820 1.45782 1.57217 1.71564 2.03641 2.25324 2.42400 2.65356 2.93724 3.28524 3.53475 3.71749 3.88100 4.00740 4.04929 4.19483 4.23958 4.31403 4.37285 4.60544 4.67391 4.74915 4.77509 4.93907 5.04084 5.16679 5.26079 5.31015 5.35758 5.39003 5.69079 5.76508 5.89902 6.19567 6.37235 6.40766 6.61035 6.85304 7.10496 7.45930 7.93677 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.003458 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.298000 B = 8095.894885 C = 8972.951961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.013 3.987 3 Si 1.188 2.812 4 H -0.331 1.331 5 H -0.269 1.269 6 H -0.299 1.299 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.258 3.742 10 C -0.291 4.291 11 C -0.027 4.027 12 C -0.304 4.304 13 C 0.375 3.625 14 N -0.649 5.649 15 C 0.520 3.480 16 O -0.531 6.531 17 C 0.110 3.890 18 N -0.709 5.709 19 C 0.543 3.457 20 O -0.580 6.580 21 C -0.203 4.203 22 C -0.142 4.142 23 C -0.149 4.149 24 N -0.612 5.612 25 H 0.281 0.719 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.422 0.578 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.419 0.581 33 H 0.149 0.851 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.853 6.124 0.496 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.204 4.204 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.197 1.197 6 H -0.228 1.228 7 C -0.540 4.540 8 H 0.087 0.913 9 C 0.132 3.868 10 C -0.313 4.313 11 C -0.051 4.051 12 C -0.328 4.328 13 C 0.144 3.856 14 N -0.295 5.295 15 C 0.308 3.692 16 O -0.408 6.408 17 C -0.017 4.017 18 N -0.364 5.364 19 C 0.331 3.669 20 O -0.460 6.460 21 C -0.223 4.223 22 C -0.180 4.180 23 C -0.187 4.187 24 N -0.338 5.338 25 H 0.092 0.908 26 H 0.133 0.867 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.260 0.740 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.258 0.742 33 H 0.166 0.834 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 22.240 8.454 0.669 23.802 hybrid contribution -0.608 -3.010 -0.272 3.083 sum 21.631 5.443 0.397 22.309 Atomic orbital electron populations 1.70668 1.08489 1.32724 1.33379 1.28586 0.95623 1.08042 0.88127 0.81399 0.70005 0.67647 0.78857 1.26447 1.19664 1.22818 1.20728 0.91053 0.95925 1.46268 0.91333 1.18446 0.93406 0.87330 0.87577 1.21791 0.95070 0.98123 1.16284 1.21365 0.93390 0.97969 0.92365 1.21880 1.01636 0.91207 1.18061 1.18422 0.88220 0.85811 0.93158 1.43229 1.11212 1.12758 1.62329 1.20956 0.80931 0.89999 0.77301 1.90601 1.67167 1.41893 1.41098 1.21049 0.82987 0.93983 1.03717 1.45650 1.09258 1.19759 1.61744 1.20207 0.87499 0.81715 0.77453 1.90694 1.78993 1.31310 1.44967 1.22247 0.87622 1.08213 1.04251 1.23072 0.98369 1.00922 0.95603 1.23047 1.00354 0.91873 1.03384 1.65902 1.08055 1.29533 1.30317 0.90832 0.86727 0.83622 0.82862 0.74002 0.86494 0.86136 0.74230 0.83377 0.89190 0.85165 0.85542 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.96 13.65 21.84 0.30 -45.66 16 2 C 0.01 0.69 5.52 85.29 0.47 1.16 16 3 Si 1.19 55.97 25.53 68.60 1.75 57.72 16 4 H -0.33 -15.37 7.11 99.48 0.71 -14.66 16 5 H -0.27 -11.83 6.70 99.48 0.67 -11.16 16 6 H -0.30 -14.21 7.10 99.48 0.71 -13.50 16 7 C -0.51 -27.97 9.58 23.47 0.22 -27.74 16 8 H 0.07 3.84 8.05 -2.91 -0.02 3.82 16 9 C 0.26 13.27 6.39 40.21 0.26 13.52 16 10 C -0.29 -13.22 9.83 22.87 0.22 -13.00 16 11 C -0.03 -1.06 10.15 22.40 0.23 -0.83 16 12 C -0.30 -12.16 8.83 22.72 0.20 -11.96 16 13 C 0.37 15.73 7.51 133.23 1.00 16.73 16 14 N -0.65 -20.90 5.41 -308.38 -1.67 -22.57 16 15 C 0.52 14.14 7.74 87.66 0.68 14.82 16 16 O -0.53 -16.78 12.47 -3.01 -0.04 -16.82 16 17 C 0.11 2.20 6.16 85.63 0.53 2.73 16 18 N -0.71 -13.69 5.53 -466.78 -2.58 -16.27 16 19 C 0.54 11.28 7.61 87.66 0.67 11.95 16 20 O -0.58 -16.19 16.26 -3.02 -0.05 -16.23 16 21 C -0.20 -2.80 6.19 -11.54 -0.07 -2.87 16 22 C -0.14 -1.57 10.24 30.62 0.31 -1.25 16 23 C -0.15 -1.87 10.05 30.62 0.31 -1.56 16 24 N -0.61 -29.62 4.59 -186.36 -0.85 -30.48 16 25 H 0.28 15.07 8.72 -92.71 -0.81 14.27 16 26 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 27 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 28 H 0.15 5.73 5.33 -3.16 -0.02 5.72 16 29 H 0.42 11.73 8.83 -92.71 -0.82 10.91 16 30 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.42 7.45 7.44 -92.71 -0.69 6.76 16 33 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.49 7.67 -2.39 -0.02 1.47 16 Total: -1.00 -68.54 321.14 1.43 -67.11 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.46 Total: 21.50 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 5.03 Total: 1.69 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.81 Total: -114.97 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.09 Total: -33.05 kcal Atomic # 14 Polarization: 55.97 SS G_CDS: 1.75 Total: 57.72 kcal Total: -68.54 1.43 -67.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.461 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds