Wall clock time and date at job start Tue Mar 31 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48496 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47040 * 299.99912 * 3 2 1 6 6 H 1.48500 * 109.47231 * 59.99749 * 3 2 1 7 7 C 1.40028 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00231 * 359.72631 * 7 2 1 10 10 C 1.40621 * 119.78971 * 180.27419 * 9 7 2 11 11 C 1.38304 * 119.12698 * 180.02562 * 10 9 7 12 12 C 1.38700 * 118.66906 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49936 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57332 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99730 * 174.71541 * 14 13 12 16 16 O 1.21272 * 119.99969 * 5.15080 * 15 14 13 17 17 C 1.50700 * 120.00024 * 185.15353 * 15 14 13 18 18 H 1.09001 * 109.59721 * 300.32427 * 17 15 14 19 19 C 1.53344 * 109.60324 * 179.97438 * 17 15 14 20 20 C 1.53070 * 108.42425 * 172.71399 * 19 17 15 21 21 C 1.50180 * 109.89145 * 48.89533 * 20 19 17 22 22 O 1.21282 * 118.24491 * 162.39775 * 21 20 19 23 23 N 1.33346 * 123.50833 * 342.42167 * 21 20 19 24 24 C 1.45746 * 124.11125 * 2.22171 * 23 21 20 25 25 N 1.31934 * 120.84989 * 359.72083 * 13 12 11 26 26 H 0.96998 * 119.99913 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.43348 * 359.97398 * 10 9 7 28 28 H 1.07996 * 120.66462 * 179.97438 * 11 10 9 29 29 H 1.07999 * 120.24616 * 179.97438 * 12 11 10 30 30 H 0.96993 * 120.00003 * 354.71000 * 14 13 12 31 31 H 1.09001 * 109.67212 * 292.43720 * 19 17 15 32 32 H 1.08994 * 109.67512 * 52.97822 * 19 17 15 33 33 H 1.08996 * 109.40302 * 169.03231 * 20 19 17 34 34 H 1.09008 * 109.39875 * 288.85434 * 20 19 17 35 35 H 0.97006 * 117.94366 * 182.22147 * 23 21 20 36 36 H 1.09003 * 109.30629 * 220.61264 * 24 23 21 37 37 H 1.08998 * 109.30590 * 101.23478 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3009 -2.4367 0.0069 10 6 2.0085 -3.6519 0.0133 11 6 1.3032 -4.8416 0.0190 12 6 -0.0830 -4.7933 0.0187 13 6 -0.7279 -3.5549 0.0123 14 7 -2.1197 -3.5047 0.0115 15 6 -2.7512 -2.3184 0.1128 16 8 -2.1109 -1.2885 0.1105 17 6 -4.2530 -2.2717 0.2289 18 1 -4.7022 -2.7384 -0.6478 19 6 -4.7161 -0.8134 0.3303 20 6 -6.2451 -0.7856 0.2628 21 6 -6.8172 -1.7903 1.2212 22 8 -7.9834 -1.6833 1.5365 23 7 -6.1115 -2.7935 1.7443 24 6 -4.6933 -3.0142 1.4913 25 7 -0.0357 -2.4317 0.0119 26 1 -0.4850 0.8400 -0.0004 27 1 3.0884 -3.6560 0.0129 28 1 1.8214 -5.7891 0.0235 29 1 -0.6591 -5.7068 0.0227 30 1 -2.6344 -4.3235 -0.0621 31 1 -4.3829 -0.3876 1.2768 32 1 -4.3017 -0.2384 -0.4976 33 1 -6.6011 0.2102 0.5267 34 1 -6.5672 -1.0286 -0.7498 35 1 -6.5710 -3.4155 2.3301 36 1 -4.5119 -4.0814 1.3633 37 1 -4.1150 -2.6532 2.3417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882477670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:22 Heat of formation + Delta-G solvation = -20.556516 kcal Electronic energy + Delta-G solvation = -22856.288512 eV Core-core repulsion = 19406.012289 eV Total energy + Delta-G solvation = -3450.276223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.54716 -39.26362 -37.73552 -36.03767 -34.26751 -33.14504 -32.93399 -30.50743 -30.20667 -28.73622 -25.63218 -24.75975 -23.54716 -21.89497 -21.24670 -19.87327 -18.93490 -17.94674 -17.29883 -16.43367 -16.13523 -15.96177 -15.27670 -14.80110 -14.65315 -14.50635 -14.14105 -13.71664 -13.67384 -13.40275 -13.28820 -12.89632 -12.16821 -12.08664 -11.72770 -11.69233 -11.25103 -11.17318 -11.01806 -10.98241 -10.68879 -10.53512 -9.97028 -9.82324 -9.76047 -9.23897 -9.10056 -9.07354 -8.03085 -7.29449 -7.04676 -6.20790 -4.45659 2.54514 2.67956 2.98383 3.14366 3.14596 3.17668 3.21550 3.58483 3.67168 4.01979 4.50911 4.57320 4.69287 4.76461 4.88632 5.20503 5.23350 5.34966 5.39210 5.64453 5.73867 5.97431 6.02393 6.06782 6.22901 6.42306 6.60025 6.62144 6.76431 6.79211 7.16878 7.17943 7.48040 7.55059 7.75401 7.98318 8.09016 8.13019 8.38922 8.67080 8.98729 9.13525 10.17083 10.41704 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.005023 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.155772 B = 5572.593088 C = 7002.946709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.657 5.657 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.304 4.304 11 C -0.037 4.037 12 C -0.357 4.357 13 C 0.370 3.630 14 N -0.666 5.666 15 C 0.478 3.522 16 O -0.398 6.398 17 C -0.124 4.124 18 H 0.098 0.902 19 C -0.103 4.103 20 C -0.135 4.135 21 C 0.521 3.479 22 O -0.566 6.566 23 N -0.717 5.717 24 C 0.119 3.881 25 N -0.473 5.473 26 H 0.272 0.728 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.398 0.602 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 -3.875 0.504 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.276 5.276 2 C -0.170 4.170 3 Si 0.720 3.280 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.454 4.454 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.327 4.327 11 C -0.061 4.061 12 C -0.383 4.383 13 C 0.131 3.869 14 N -0.313 5.313 15 C 0.258 3.742 16 O -0.261 6.261 17 C -0.146 4.146 18 H 0.116 0.884 19 C -0.141 4.141 20 C -0.175 4.175 21 C 0.308 3.692 22 O -0.445 6.445 23 N -0.369 5.369 24 C -0.005 4.005 25 N -0.192 5.192 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.234 0.766 36 H 0.100 0.900 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.449 -1.834 0.535 9.641 hybrid contribution 0.494 -1.071 0.162 1.191 sum -8.956 -2.905 0.697 9.441 Atomic orbital electron populations 1.70315 1.05788 1.27324 1.24129 1.26163 0.95148 1.00603 0.95133 0.86458 0.80952 0.82159 0.78412 1.18599 1.20029 1.20041 1.19632 0.94136 0.89368 1.42313 0.89908 1.18388 0.87164 0.91962 0.87932 1.21640 0.98608 0.93544 1.18909 1.20569 0.93220 0.96539 0.95746 1.20486 0.94801 0.94941 1.28023 1.18606 0.83251 0.90961 0.94043 1.43430 1.05180 1.09025 1.73647 1.20318 0.88194 0.85178 0.80509 1.91174 1.64718 1.30816 1.39352 1.21705 0.95388 0.98629 0.98910 0.88390 1.21476 0.92674 0.94759 1.05164 1.21697 0.96836 0.99300 0.99646 1.20305 0.85999 0.81691 0.81189 1.90744 1.17543 1.74656 1.61550 1.45453 1.11055 1.30088 1.50318 1.21335 0.80835 1.00580 0.97766 1.68688 1.07043 1.23205 1.20304 0.91658 0.88557 0.88629 0.89108 0.76846 0.90329 0.89089 0.87870 0.88180 0.76554 0.90044 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.35 8.99 55.55 0.50 -16.85 16 2 C 0.06 1.49 5.50 -17.35 -0.10 1.39 16 3 Si 0.90 18.68 29.56 -169.99 -5.02 13.66 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.42 -11.31 9.14 -37.73 -0.34 -11.66 16 8 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 9 C 0.27 7.34 6.55 -84.99 -0.56 6.78 16 10 C -0.30 -7.41 9.83 -38.66 -0.38 -7.79 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.36 -7.56 9.95 -38.89 -0.39 -7.95 16 13 C 0.37 8.43 7.43 -154.97 -1.15 7.28 16 14 N -0.67 -11.59 5.28 -11.40 -0.06 -11.65 16 15 C 0.48 8.33 7.09 -10.99 -0.08 8.25 16 16 O -0.40 -8.99 11.67 5.56 0.06 -8.92 16 17 C -0.12 -1.47 2.60 -91.63 -0.24 -1.71 16 18 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 19 C -0.10 -1.24 4.71 -26.52 -0.12 -1.36 16 20 C -0.14 -1.42 6.03 -28.10 -0.17 -1.59 16 21 C 0.52 6.51 7.71 -11.87 -0.09 6.42 16 22 O -0.57 -9.17 17.78 5.56 0.10 -9.07 16 23 N -0.72 -7.34 5.45 -61.39 -0.33 -7.67 16 24 C 0.12 1.19 6.38 -4.49 -0.03 1.16 16 25 N -0.47 -12.62 5.74 -10.25 -0.06 -12.68 16 26 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 27 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.40 5.13 8.58 -40.82 -0.35 4.78 16 31 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 32 H 0.09 1.18 7.90 -51.93 -0.41 0.77 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.40 3.56 8.80 -40.82 -0.36 3.20 16 36 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 37 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -33.41 313.12 -8.60 -42.01 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.46 Total: 8.43 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.05 Total: -1.98 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.05 Total: -48.85 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.16 Total: -17.99 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.41 -8.60 -42.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.456 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds