Wall clock time and date at job start Tue Mar 31 2020 02:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48496 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47040 * 299.99912 * 3 2 1 6 6 H 1.48500 * 109.47231 * 59.99749 * 3 2 1 7 7 C 1.40028 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00231 * 359.72631 * 7 2 1 10 10 C 1.40621 * 119.78971 * 180.27419 * 9 7 2 11 11 C 1.38304 * 119.12698 * 180.02562 * 10 9 7 12 12 C 1.38700 * 118.66906 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49936 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57332 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99730 * 174.71541 * 14 13 12 16 16 O 1.21272 * 119.99969 * 5.15080 * 15 14 13 17 17 C 1.50700 * 120.00024 * 185.15353 * 15 14 13 18 18 H 1.09001 * 109.59721 * 300.32427 * 17 15 14 19 19 C 1.53344 * 109.60324 * 179.97438 * 17 15 14 20 20 C 1.53070 * 108.42425 * 172.71399 * 19 17 15 21 21 C 1.50180 * 109.89145 * 48.89533 * 20 19 17 22 22 O 1.21282 * 118.24491 * 162.39775 * 21 20 19 23 23 N 1.33346 * 123.50833 * 342.42167 * 21 20 19 24 24 C 1.45746 * 124.11125 * 2.22171 * 23 21 20 25 25 N 1.31934 * 120.84989 * 359.72083 * 13 12 11 26 26 H 0.96998 * 119.99913 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.43348 * 359.97398 * 10 9 7 28 28 H 1.07996 * 120.66462 * 179.97438 * 11 10 9 29 29 H 1.07999 * 120.24616 * 179.97438 * 12 11 10 30 30 H 0.96993 * 120.00003 * 354.71000 * 14 13 12 31 31 H 1.09001 * 109.67212 * 292.43720 * 19 17 15 32 32 H 1.08994 * 109.67512 * 52.97822 * 19 17 15 33 33 H 1.08996 * 109.40302 * 169.03231 * 20 19 17 34 34 H 1.09008 * 109.39875 * 288.85434 * 20 19 17 35 35 H 0.97006 * 117.94366 * 182.22147 * 23 21 20 36 36 H 1.09003 * 109.30629 * 220.61264 * 24 23 21 37 37 H 1.08998 * 109.30590 * 101.23478 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3009 -2.4367 0.0069 10 6 2.0085 -3.6519 0.0133 11 6 1.3032 -4.8416 0.0190 12 6 -0.0830 -4.7933 0.0187 13 6 -0.7279 -3.5549 0.0123 14 7 -2.1197 -3.5047 0.0115 15 6 -2.7512 -2.3184 0.1128 16 8 -2.1109 -1.2885 0.1105 17 6 -4.2530 -2.2717 0.2289 18 1 -4.7022 -2.7384 -0.6478 19 6 -4.7161 -0.8134 0.3303 20 6 -6.2451 -0.7856 0.2628 21 6 -6.8172 -1.7903 1.2212 22 8 -7.9834 -1.6833 1.5365 23 7 -6.1115 -2.7935 1.7443 24 6 -4.6933 -3.0142 1.4913 25 7 -0.0357 -2.4317 0.0119 26 1 -0.4850 0.8400 -0.0004 27 1 3.0884 -3.6560 0.0129 28 1 1.8214 -5.7891 0.0235 29 1 -0.6591 -5.7068 0.0227 30 1 -2.6344 -4.3235 -0.0621 31 1 -4.3829 -0.3876 1.2768 32 1 -4.3017 -0.2384 -0.4976 33 1 -6.6011 0.2102 0.5267 34 1 -6.5672 -1.0286 -0.7498 35 1 -6.5710 -3.4155 2.3301 36 1 -4.5119 -4.0814 1.3633 37 1 -4.1150 -2.6532 2.3417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882477670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:21 Heat of formation + Delta-G solvation = -44.088998 kcal Electronic energy + Delta-G solvation = -22857.308957 eV Core-core repulsion = 19406.012289 eV Total energy + Delta-G solvation = -3451.296668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.64487 -40.67608 -39.34105 -37.17894 -35.92643 -34.83970 -33.93784 -32.21314 -31.59783 -30.25362 -27.44565 -25.70079 -24.79957 -23.45570 -22.88598 -21.20959 -20.11985 -19.48478 -18.51747 -17.94408 -17.40744 -17.05615 -16.44550 -16.33769 -16.23396 -15.89943 -15.52273 -15.07952 -14.83755 -14.79944 -14.57470 -14.34900 -13.74129 -13.72294 -12.91759 -12.86457 -12.73819 -12.70317 -12.52368 -12.30295 -12.18544 -11.96632 -11.72917 -11.47673 -10.84531 -10.83339 -10.60398 -10.14852 -9.85932 -9.06507 -8.78320 -8.03746 -6.38938 0.94270 1.27533 1.41964 1.52590 1.55084 1.57663 2.05798 2.27037 2.28115 2.39322 3.01310 3.55821 3.60022 3.74266 3.75940 4.09548 4.25538 4.27003 4.40494 4.45109 4.55107 4.74652 4.80323 4.87179 4.96107 4.99283 5.06498 5.10911 5.24562 5.32515 5.71616 5.79611 5.88515 5.96759 6.18723 6.25402 6.40766 6.78114 6.87043 7.11780 7.16463 7.72387 8.37624 8.58445 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.005023 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.155772 B = 5572.593088 C = 7002.946709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.015 3.985 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.467 4.467 8 H 0.082 0.918 9 C 0.238 3.762 10 C -0.332 4.332 11 C -0.036 4.036 12 C -0.344 4.344 13 C 0.350 3.650 14 N -0.652 5.652 15 C 0.474 3.526 16 O -0.453 6.453 17 C -0.108 4.108 18 H 0.129 0.871 19 C -0.098 4.098 20 C -0.125 4.125 21 C 0.518 3.482 22 O -0.606 6.606 23 N -0.704 5.704 24 C 0.125 3.875 25 N -0.506 5.506 26 H 0.271 0.729 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.422 0.578 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.408 0.592 36 H 0.116 0.884 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 -5.595 0.297 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.210 4.210 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.498 4.498 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.355 4.355 11 C -0.060 4.060 12 C -0.369 4.369 13 C 0.111 3.889 14 N -0.301 5.301 15 C 0.257 3.743 16 O -0.318 6.318 17 C -0.130 4.130 18 H 0.147 0.853 19 C -0.136 4.136 20 C -0.164 4.164 21 C 0.307 3.693 22 O -0.488 6.488 23 N -0.355 5.355 24 C 0.001 3.999 25 N -0.225 5.225 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.260 0.740 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.140 0.860 35 H 0.245 0.755 36 H 0.134 0.866 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.558 -3.632 0.335 11.170 hybrid contribution 0.790 -0.740 0.233 1.107 sum -9.768 -4.372 0.568 10.717 Atomic orbital electron populations 1.70483 1.07031 1.27903 1.25235 1.26924 0.96033 1.03626 0.94449 0.85339 0.79584 0.77516 0.78388 1.18106 1.19534 1.19674 1.19900 0.94342 0.90593 1.44973 0.90025 1.18831 0.88114 0.93179 0.88590 1.21801 0.99104 0.94025 1.20589 1.21035 0.93832 0.97159 0.93996 1.20990 0.95015 0.95963 1.24919 1.19139 0.85413 0.90906 0.93453 1.43393 1.03351 1.10493 1.72887 1.21205 0.90230 0.84251 0.78648 1.91178 1.66507 1.32642 1.41496 1.21589 0.91013 0.99093 1.01292 0.85292 1.21379 0.93756 0.94780 1.03702 1.21650 0.95106 0.99255 1.00419 1.20575 0.85526 0.82020 0.81177 1.90736 1.19271 1.75698 1.63121 1.45341 1.10953 1.29529 1.49696 1.21341 0.80235 1.02205 0.96143 1.68660 1.07139 1.25456 1.21292 0.91824 0.88177 0.84821 0.84819 0.74030 0.92185 0.90347 0.87373 0.86036 0.75481 0.86562 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -37.85 8.99 21.84 0.20 -37.65 16 2 C 0.02 0.81 5.50 85.29 0.47 1.28 16 3 Si 0.97 39.77 29.56 68.60 2.03 41.80 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.47 -26.04 9.14 23.47 0.21 -25.83 16 8 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 9 C 0.24 13.35 6.55 40.21 0.26 13.61 16 10 C -0.33 -16.34 9.83 22.87 0.22 -16.11 16 11 C -0.04 -1.50 10.15 22.40 0.23 -1.27 16 12 C -0.34 -13.57 9.95 22.72 0.23 -13.35 16 13 C 0.35 15.57 7.43 133.23 0.99 16.56 16 14 N -0.65 -21.32 5.28 -308.38 -1.63 -22.95 16 15 C 0.47 16.06 7.09 87.66 0.62 16.68 16 16 O -0.45 -20.91 11.67 -3.00 -0.04 -20.95 16 17 C -0.11 -2.31 2.60 -11.45 -0.03 -2.34 16 18 H 0.13 2.06 8.13 -2.39 -0.02 2.04 16 19 C -0.10 -2.27 4.71 30.73 0.14 -2.13 16 20 C -0.12 -2.40 6.03 29.71 0.18 -2.22 16 21 C 0.52 11.92 7.71 87.72 0.68 12.60 16 22 O -0.61 -18.82 17.78 -3.03 -0.05 -18.87 16 23 N -0.70 -12.50 5.45 -467.33 -2.55 -15.04 16 24 C 0.13 2.11 6.38 86.50 0.55 2.66 16 25 N -0.51 -27.51 5.74 -186.36 -1.07 -28.58 16 26 H 0.27 13.97 8.29 -92.71 -0.77 13.20 16 27 H 0.10 4.65 8.06 -2.92 -0.02 4.63 16 28 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.42 9.21 8.58 -92.71 -0.80 8.41 16 31 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 32 H 0.08 2.04 7.90 -2.39 -0.02 2.02 16 33 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.41 6.13 8.80 -92.70 -0.82 5.32 16 36 H 0.12 1.23 8.03 -2.39 -0.02 1.21 16 37 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 Total: -1.00 -76.63 313.12 1.16 -75.47 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -0.49 Total: 26.64 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 4.76 Total: 0.15 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -5.05 Total: -104.22 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.09 Total: -39.82 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -76.63 1.16 -75.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -76.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds