Wall clock time and date at job start Tue Mar 31 2020 02:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86803 * 120.00141 * 2 1 4 4 H 1.48498 * 109.46674 * 274.98037 * 3 2 1 5 5 H 1.48494 * 109.47294 * 34.98092 * 3 2 1 6 6 H 1.48508 * 109.47090 * 154.98506 * 3 2 1 7 7 C 1.40037 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00181 * 173.72876 * 7 2 1 9 9 C 1.41338 * 119.99401 * 353.73018 * 7 2 1 10 10 C 1.40619 * 119.78104 * 186.45331 * 9 7 2 11 11 C 1.38309 * 119.12306 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.67019 * 0.02562 * 11 10 9 13 13 C 1.39631 * 119.49971 * 0.02562 * 12 11 10 14 14 N 1.39263 * 119.57430 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00183 * 341.08347 * 14 13 12 16 16 O 1.21276 * 119.99924 * 354.40331 * 15 14 13 17 17 C 1.50704 * 120.00461 * 174.40571 * 15 14 13 18 18 H 1.09004 * 109.59761 * 59.99920 * 17 15 14 19 19 C 1.53337 * 109.73853 * 180.40651 * 17 15 14 20 20 C 1.53058 * 108.43558 * 187.35284 * 19 17 15 21 21 C 1.50178 * 109.89725 * 311.11529 * 20 19 17 22 22 O 1.21282 * 118.25116 * 197.56363 * 21 20 19 23 23 N 1.33353 * 123.50312 * 17.58267 * 21 20 19 24 24 C 1.45759 * 124.10797 * 357.75230 * 23 21 20 25 25 N 1.31932 * 120.84744 * 0.26181 * 13 12 11 26 26 H 0.97000 * 119.99927 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.43819 * 359.97438 * 10 9 7 28 28 H 1.08003 * 120.66126 * 180.02562 * 11 10 9 29 29 H 1.08004 * 120.24645 * 179.97438 * 12 11 10 30 30 H 0.97007 * 120.00220 * 161.08924 * 14 13 12 31 31 H 1.09001 * 109.68075 * 307.09995 * 19 17 15 32 32 H 1.09006 * 109.67432 * 67.63670 * 19 17 15 33 33 H 1.09008 * 109.40233 * 190.98977 * 20 19 17 34 34 H 1.08996 * 109.40245 * 71.24601 * 20 19 17 35 35 H 0.97005 * 117.94373 * 177.77824 * 23 21 20 36 36 H 1.08993 * 109.30226 * 258.78301 * 24 23 21 37 37 H 1.09002 * 109.29422 * 139.41040 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1071 -1.3948 5 1 1.4956 2.6200 0.8026 6 1 3.5878 1.4120 0.5921 7 6 2.0076 -1.2127 0.0005 8 1 3.0827 -1.2156 -0.1016 9 6 1.3071 -2.4330 0.1348 10 6 2.0210 -3.6367 0.2715 11 6 1.3218 -4.8229 0.4025 12 6 -0.0645 -4.7825 0.3937 13 6 -0.7158 -3.5554 0.2534 14 7 -2.1077 -3.5130 0.2449 15 6 -2.8144 -4.6316 -0.0115 16 8 -2.2412 -5.6504 -0.3343 17 6 -4.3171 -4.6165 0.1029 18 1 -4.7290 -3.8821 -0.5893 19 6 -4.8756 -6.0056 -0.2283 20 6 -6.4024 -5.9126 -0.2841 21 6 -6.9162 -5.2027 0.9354 22 8 -8.0898 -5.3219 1.2172 23 7 -6.1510 -4.4480 1.7249 24 6 -4.7190 -4.2553 1.5334 25 7 -0.0294 -2.4361 0.1242 26 1 -0.4850 0.8401 -0.0004 27 1 3.1010 -3.6351 0.2742 28 1 1.8450 -5.7617 0.5095 29 1 -0.6359 -5.6935 0.4937 30 1 -2.5687 -2.6784 0.4235 31 1 -4.4924 -6.3346 -1.1941 32 1 -4.5795 -6.7142 0.5453 33 1 -6.8251 -6.9166 -0.3236 34 1 -6.6991 -5.3609 -1.1761 35 1 -6.5740 -3.9995 2.4739 36 1 -4.1735 -4.8895 2.2320 37 1 -4.4670 -3.2124 1.7260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882477671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:24 Heat of formation + Delta-G solvation = -57.562456 kcal Electronic energy + Delta-G solvation = -22349.500743 eV Core-core repulsion = 18897.619822 eV Total energy + Delta-G solvation = -3451.880921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93382 -40.90088 -39.56556 -37.34621 -36.05838 -35.09953 -34.01808 -32.33698 -31.76167 -30.39866 -27.43980 -25.79572 -24.89149 -23.50739 -23.13863 -21.54262 -20.21971 -19.35261 -18.95544 -18.09287 -17.72531 -17.14135 -16.72375 -16.55896 -16.30823 -16.11488 -15.50064 -15.24928 -15.11884 -14.84536 -14.60182 -14.38246 -14.02855 -13.80103 -13.06841 -12.94780 -12.88501 -12.77400 -12.61482 -12.52218 -12.25991 -11.99881 -11.84582 -11.57139 -11.03161 -10.85744 -10.59481 -10.17398 -9.97206 -9.63587 -8.98448 -8.31233 -6.49522 0.71454 1.10261 1.44600 1.51308 1.57169 1.58199 1.71795 1.98114 2.25374 2.29371 2.87802 3.41021 3.50136 3.63045 3.70181 3.92497 4.16446 4.21265 4.36475 4.39974 4.51300 4.66813 4.69515 4.86557 4.89695 4.94904 4.98744 5.01710 5.19206 5.25653 5.63052 5.66827 5.76472 5.94891 6.07430 6.24775 6.27800 6.50542 6.78590 6.94354 7.15152 7.19308 8.10722 8.45010 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.003788 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.774305 B = 7390.736053 C = 8331.764355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.030 3.970 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.089 0.911 9 C 0.246 3.754 10 C -0.309 4.309 11 C -0.049 4.049 12 C -0.325 4.325 13 C 0.347 3.653 14 N -0.640 5.640 15 C 0.525 3.475 16 O -0.544 6.544 17 C -0.110 4.110 18 H 0.132 0.868 19 C -0.099 4.099 20 C -0.126 4.126 21 C 0.516 3.484 22 O -0.605 6.605 23 N -0.706 5.706 24 C 0.121 3.879 25 N -0.532 5.532 26 H 0.280 0.720 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.418 0.582 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 -3.472 1.395 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.499 4.499 8 H 0.107 0.893 9 C 0.119 3.881 10 C -0.332 4.332 11 C -0.074 4.074 12 C -0.349 4.349 13 C 0.111 3.889 14 N -0.285 5.285 15 C 0.312 3.688 16 O -0.420 6.420 17 C -0.132 4.132 18 H 0.150 0.850 19 C -0.137 4.137 20 C -0.165 4.165 21 C 0.305 3.695 22 O -0.488 6.488 23 N -0.357 5.357 24 C -0.004 4.004 25 N -0.251 5.251 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.255 0.745 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.245 0.755 36 H 0.094 0.906 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.184 -3.466 1.041 10.808 hybrid contribution 0.773 0.475 0.443 1.010 sum -9.411 -2.991 1.484 9.986 Atomic orbital electron populations 1.70160 1.08633 1.29093 1.29387 1.26876 0.95781 1.04138 0.92433 0.85154 0.79158 0.76005 0.79154 1.19036 1.19133 1.18213 1.19933 0.95178 0.90386 1.44383 0.89314 1.18654 0.87266 0.93234 0.88898 1.21898 0.99530 0.93855 1.17880 1.21183 0.93916 0.97407 0.94881 1.21833 0.95070 0.98156 1.19866 1.18879 0.84960 0.90937 0.94107 1.43284 1.03843 1.13432 1.67983 1.20918 0.90142 0.82080 0.75632 1.90618 1.71767 1.33301 1.46324 1.21603 0.89084 1.02444 1.00021 0.84978 1.21460 0.93422 0.94261 1.04534 1.21670 0.95610 1.03303 0.95939 1.20681 0.85355 0.78179 0.85267 1.90748 1.19028 1.64883 1.74108 1.45355 1.09284 1.49437 1.31581 1.21354 0.80425 1.04013 0.94564 1.68083 1.08588 1.25934 1.22499 0.90932 0.87156 0.85311 0.84521 0.74502 0.89280 0.90818 0.86686 0.86100 0.75517 0.90627 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.39 11.49 21.84 0.25 -37.14 16 2 C 0.03 1.45 5.49 85.29 0.47 1.92 16 3 Si 0.98 36.17 29.56 68.60 2.03 38.20 16 4 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.47 -24.51 9.13 23.47 0.21 -24.30 16 8 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.25 13.31 6.54 40.21 0.26 13.57 16 10 C -0.31 -15.18 9.83 22.87 0.22 -14.96 16 11 C -0.05 -2.23 10.15 22.40 0.23 -2.00 16 12 C -0.32 -14.90 8.83 22.72 0.20 -14.70 16 13 C 0.35 16.08 7.51 133.23 1.00 17.08 16 14 N -0.64 -22.22 5.30 -308.38 -1.63 -23.85 16 15 C 0.52 15.52 6.98 87.66 0.61 16.14 16 16 O -0.54 -19.99 12.71 -3.02 -0.04 -20.03 16 17 C -0.11 -2.03 2.59 -11.45 -0.03 -2.06 16 18 H 0.13 1.93 8.12 -2.38 -0.02 1.91 16 19 C -0.10 -1.71 4.72 30.73 0.15 -1.57 16 20 C -0.13 -1.92 6.03 29.70 0.18 -1.74 16 21 C 0.52 10.70 7.71 87.71 0.68 11.37 16 22 O -0.61 -17.75 17.78 -3.04 -0.05 -17.80 16 23 N -0.71 -11.58 5.45 -467.32 -2.55 -14.12 16 24 C 0.12 1.87 6.37 86.49 0.55 2.42 16 25 N -0.53 -27.98 7.92 -186.36 -1.48 -29.46 16 26 H 0.28 12.44 8.29 -92.71 -0.77 11.67 16 27 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 28 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 29 H 0.14 6.06 5.33 -3.15 -0.02 6.04 16 30 H 0.42 12.58 8.68 -92.70 -0.80 11.78 16 31 H 0.09 1.63 7.90 -2.39 -0.02 1.62 16 32 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 33 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.41 5.95 8.80 -92.70 -0.82 5.14 16 36 H 0.08 1.24 8.11 -2.39 -0.02 1.22 16 37 H 0.11 1.33 8.00 -2.39 -0.02 1.31 16 Total: -1.00 -70.53 315.05 0.77 -69.75 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.49 Total: 33.28 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.73 Total: 1.17 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -5.41 Total: -104.57 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.09 Total: -37.83 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -70.53 0.77 -69.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.191 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds