Wall clock time and date at job start Tue Mar 31 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42098 * 108.57796 * 2 1 4 4 O 1.42098 * 108.57959 * 228.97119 * 2 1 3 5 5 C 1.81396 * 101.92006 * 114.48454 * 2 1 3 6 6 H 1.09000 * 112.90991 * 53.75147 * 5 2 1 7 7 C 1.53786 * 113.61571 * 184.99956 * 5 2 1 8 8 C 1.53781 * 87.17350 * 140.02404 * 7 5 2 9 9 H 1.09000 * 113.61379 * 219.89528 * 8 7 5 10 10 N 1.46505 * 113.61334 * 89.07333 * 8 7 5 11 11 C 1.34776 * 119.99597 * 154.99978 * 10 8 7 12 12 O 1.21275 * 120.00338 * 0.02562 * 11 10 8 13 13 C 1.50705 * 119.99715 * 180.02562 * 11 10 8 14 14 C 1.53003 * 109.47127 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47109 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47007 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00091 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47121 * 90.00083 * 20 18 16 22 22 H 1.48494 * 109.47516 * 210.00016 * 20 18 16 23 23 H 1.48497 * 109.47293 * 330.00185 * 20 18 16 24 24 C 1.53781 * 87.08070 * 334.52830 * 8 7 5 25 25 H 1.08995 * 109.47091 * 305.51674 * 1 2 3 26 26 H 1.09005 * 109.46956 * 65.51647 * 1 2 3 27 27 H 1.09005 * 109.46840 * 185.51325 * 1 2 3 28 28 H 1.09002 * 113.61357 * 25.43320 * 7 5 2 29 29 H 1.09002 * 113.61608 * 254.61482 * 7 5 2 30 30 H 0.96995 * 120.00170 * 335.00476 * 10 8 7 31 31 H 1.09000 * 109.46532 * 299.99611 * 13 11 10 32 32 H 1.08993 * 109.47264 * 60.00029 * 13 11 10 33 33 H 1.09002 * 109.47114 * 300.00023 * 14 13 11 34 34 H 1.09004 * 109.46940 * 59.99381 * 14 13 11 35 35 H 1.09006 * 109.47041 * 299.99601 * 15 14 13 36 36 H 1.08993 * 109.47174 * 60.00060 * 15 14 13 37 37 H 0.96998 * 120.00248 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.61471 * 139.98321 * 24 8 7 39 39 H 1.08996 * 113.61178 * 270.79663 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6152 6 1 1.6955 -1.6954 1.7691 7 6 3.6894 -0.7535 1.9508 8 6 3.2944 -0.3803 3.3894 9 1 3.9621 0.3474 3.8507 10 7 3.0369 -1.5399 4.2469 11 6 3.1784 -1.4346 5.5831 12 8 3.5183 -0.3798 6.0756 13 6 2.9141 -2.6276 6.4651 14 6 3.1449 -2.2417 7.9276 15 6 2.8759 -3.4527 8.8231 16 6 3.1039 -3.0728 10.2635 17 1 3.4103 -2.0682 10.5150 18 6 2.9212 -4.0077 11.2603 19 7 2.5484 -5.2313 10.9540 20 14 3.2044 -3.5371 13.0456 21 1 1.9371 -3.0304 13.6310 22 1 3.6589 -4.7290 13.8057 23 1 4.2422 -2.4775 13.1196 24 6 2.0196 0.2410 2.7945 25 1 -0.3633 0.5970 0.8364 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3633 -1.0230 0.0987 28 1 4.2603 0.0217 1.4398 29 1 4.1443 -1.7403 1.8650 30 1 2.7647 -2.3835 3.8530 31 1 1.8825 -2.9545 6.3345 32 1 3.5895 -3.4382 6.1919 33 1 4.1763 -1.9144 8.0586 34 1 2.4691 -1.4312 8.2005 35 1 1.8443 -3.7796 8.6921 36 1 3.5514 -4.2634 8.5503 37 1 2.4195 -5.8889 11.6553 38 1 1.1252 0.0565 3.3897 39 1 2.1337 1.2885 2.5155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882667619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:36 Heat of formation + Delta-G solvation = -100.915425 kcal Electronic energy + Delta-G solvation = -20399.925973 eV Core-core repulsion = 17049.316326 eV Total energy + Delta-G solvation = -3350.609647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.35751 -38.42517 -37.36133 -36.43157 -34.22750 -33.32366 -31.99539 -30.09416 -28.12861 -26.33019 -26.02729 -23.81865 -21.14061 -20.25947 -19.82816 -19.11073 -17.78574 -16.78892 -16.59222 -16.37719 -16.20259 -16.00163 -15.41458 -14.76816 -14.43833 -13.93785 -13.78767 -13.66389 -13.51937 -13.33728 -13.10329 -12.83928 -12.49674 -12.38505 -12.29861 -11.84304 -11.53896 -11.47894 -11.38377 -11.20846 -10.82978 -10.65186 -10.56425 -10.46598 -9.78406 -9.71922 -9.31449 -9.18955 -9.05243 -8.34400 -6.00148 -4.01643 -0.44422 2.25708 2.77464 3.06131 3.08732 3.33151 3.38492 3.39139 3.43961 3.74959 3.89074 4.26702 4.31707 4.36214 4.47329 4.53824 4.99719 5.05762 5.09909 5.18179 5.22988 5.36055 5.36974 5.42098 5.60406 5.65216 5.70538 6.19981 6.38436 6.67994 6.88593 7.12190 7.46918 7.67862 7.80142 8.00350 8.33812 8.44246 9.05523 9.62546 11.11367 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.048382 B = 0.002343 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.583560 B =11949.403567 C =12089.786219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.424 3.576 3 O -0.936 6.936 4 O -0.942 6.942 5 C -0.606 4.606 6 H 0.152 0.848 7 C -0.115 4.115 8 C 0.135 3.865 9 H 0.113 0.887 10 N -0.724 5.724 11 C 0.516 3.484 12 O -0.532 6.532 13 C -0.138 4.138 14 C -0.095 4.095 15 C 0.020 3.980 16 C -0.518 4.518 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.128 4.128 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.400 0.600 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.091 0.909 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 7.801 -24.225 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.607 3.393 3 O -0.934 6.934 4 O -0.939 6.939 5 C -0.716 4.716 6 H 0.170 0.830 7 C -0.154 4.154 8 C 0.027 3.973 9 H 0.131 0.869 10 N -0.377 5.377 11 C 0.304 3.696 12 O -0.407 6.407 13 C -0.178 4.178 14 C -0.133 4.133 15 C -0.017 4.017 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.168 4.168 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.235 0.765 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.519 8.695 -24.431 26.170 hybrid contribution -0.809 -0.727 1.236 1.647 sum -4.328 7.968 -23.195 24.904 Atomic orbital electron populations 1.30228 1.26793 1.11644 1.11748 1.07746 0.78401 0.75852 0.77290 1.93604 1.79161 1.34219 1.86374 1.93596 1.79140 1.67052 1.54112 1.31809 1.07635 1.12246 1.19871 0.83034 1.23020 0.90651 1.04794 0.96980 1.21575 0.96481 0.89590 0.89613 0.86935 1.45841 1.71749 1.13411 1.06704 1.21340 0.75487 0.91042 0.81742 1.90687 1.45580 1.30403 1.74065 1.21863 1.03393 0.95229 0.97351 1.21455 1.01483 1.00574 0.89826 1.19129 0.96867 0.92068 0.93602 1.21269 1.45603 0.97134 0.91662 0.92562 1.25023 0.95334 0.94990 0.99185 1.69961 1.47678 1.03255 1.32885 0.86584 0.78522 0.77958 0.84904 1.20673 1.21253 1.19822 1.23314 1.01443 0.98209 0.93813 0.85165 0.85397 0.85340 0.87521 0.88706 0.76523 0.89311 0.89228 0.92641 0.92683 0.96639 0.96602 0.93049 0.89071 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.06 10.62 101.05 1.07 -0.99 16 2 S 2.42 14.74 5.30 -107.50 -0.57 14.17 16 3 O -0.94 -8.96 17.35 -57.83 -1.00 -9.97 16 4 O -0.94 -9.33 18.10 -57.83 -1.05 -10.37 16 5 C -0.61 -3.05 4.05 -25.77 -0.10 -3.15 16 6 H 0.15 0.40 8.14 -51.93 -0.42 -0.03 16 7 C -0.12 -0.75 7.41 -25.92 -0.19 -0.94 16 8 C 0.13 1.19 4.32 -67.11 -0.29 0.90 16 9 H 0.11 1.20 7.46 -51.93 -0.39 0.81 16 10 N -0.72 -7.16 5.26 -53.01 -0.28 -7.44 16 11 C 0.52 7.53 7.83 -10.98 -0.09 7.44 16 12 O -0.53 -9.97 15.58 5.56 0.09 -9.89 16 13 C -0.14 -2.13 5.70 -27.88 -0.16 -2.29 16 14 C -0.10 -1.99 4.44 -26.73 -0.12 -2.11 16 15 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 16 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 24 C -0.13 -0.85 7.43 -25.78 -0.19 -1.04 16 25 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 28 H 0.11 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.40 2.77 8.70 -40.82 -0.36 2.42 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.05 1.20 8.10 -51.93 -0.42 0.77 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.69 7.50 -51.93 -0.39 0.30 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -38.60 342.53 -8.72 -47.32 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -6.16 Total: -4.23 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.62 Total: -15.44 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.46 Total: -33.57 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.96 Total: -30.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 14.74 SS G_CDS: -0.57 Total: 14.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -38.60 -8.72 -47.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882667619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.595 kcal (2) G-P(sol) polarization free energy of solvation -38.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds