Wall clock time and date at job start Tue Mar 31 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42098 * 108.57796 * 2 1 4 4 O 1.42098 * 108.57959 * 228.97119 * 2 1 3 5 5 C 1.81396 * 101.92006 * 114.48454 * 2 1 3 6 6 H 1.09000 * 112.90991 * 53.75147 * 5 2 1 7 7 C 1.53786 * 113.61571 * 184.99956 * 5 2 1 8 8 C 1.53781 * 87.17350 * 140.02404 * 7 5 2 9 9 H 1.09000 * 113.61379 * 219.89528 * 8 7 5 10 10 N 1.46505 * 113.61334 * 89.07333 * 8 7 5 11 11 C 1.34776 * 119.99597 * 154.99978 * 10 8 7 12 12 O 1.21275 * 120.00338 * 0.02562 * 11 10 8 13 13 C 1.50705 * 119.99715 * 180.02562 * 11 10 8 14 14 C 1.53003 * 109.47127 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47109 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47007 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00091 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47121 * 90.00083 * 20 18 16 22 22 H 1.48494 * 109.47516 * 210.00016 * 20 18 16 23 23 H 1.48497 * 109.47293 * 330.00185 * 20 18 16 24 24 C 1.53781 * 87.08070 * 334.52830 * 8 7 5 25 25 H 1.08995 * 109.47091 * 305.51674 * 1 2 3 26 26 H 1.09005 * 109.46956 * 65.51647 * 1 2 3 27 27 H 1.09005 * 109.46840 * 185.51325 * 1 2 3 28 28 H 1.09002 * 113.61357 * 25.43320 * 7 5 2 29 29 H 1.09002 * 113.61608 * 254.61482 * 7 5 2 30 30 H 0.96995 * 120.00170 * 335.00476 * 10 8 7 31 31 H 1.09000 * 109.46532 * 299.99611 * 13 11 10 32 32 H 1.08993 * 109.47264 * 60.00029 * 13 11 10 33 33 H 1.09002 * 109.47114 * 300.00023 * 14 13 11 34 34 H 1.09004 * 109.46940 * 59.99381 * 14 13 11 35 35 H 1.09006 * 109.47041 * 299.99601 * 15 14 13 36 36 H 1.08993 * 109.47174 * 60.00060 * 15 14 13 37 37 H 0.96998 * 120.00248 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.61471 * 139.98321 * 24 8 7 39 39 H 1.08996 * 113.61178 * 270.79663 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6152 6 1 1.6955 -1.6954 1.7691 7 6 3.6894 -0.7535 1.9508 8 6 3.2944 -0.3803 3.3894 9 1 3.9621 0.3474 3.8507 10 7 3.0369 -1.5399 4.2469 11 6 3.1784 -1.4346 5.5831 12 8 3.5183 -0.3798 6.0756 13 6 2.9141 -2.6276 6.4651 14 6 3.1449 -2.2417 7.9276 15 6 2.8759 -3.4527 8.8231 16 6 3.1039 -3.0728 10.2635 17 1 3.4103 -2.0682 10.5150 18 6 2.9212 -4.0077 11.2603 19 7 2.5484 -5.2313 10.9540 20 14 3.2044 -3.5371 13.0456 21 1 1.9371 -3.0304 13.6310 22 1 3.6589 -4.7290 13.8057 23 1 4.2422 -2.4775 13.1196 24 6 2.0196 0.2410 2.7945 25 1 -0.3633 0.5970 0.8364 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3633 -1.0230 0.0987 28 1 4.2603 0.0217 1.4398 29 1 4.1443 -1.7403 1.8650 30 1 2.7647 -2.3835 3.8530 31 1 1.8825 -2.9545 6.3345 32 1 3.5895 -3.4382 6.1919 33 1 4.1763 -1.9144 8.0586 34 1 2.4691 -1.4312 8.2005 35 1 1.8443 -3.7796 8.6921 36 1 3.5514 -4.2634 8.5503 37 1 2.4195 -5.8889 11.6553 38 1 1.1252 0.0565 3.3897 39 1 2.1337 1.2885 2.5155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882667619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:36 Heat of formation + Delta-G solvation = -130.955528 kcal Electronic energy + Delta-G solvation = -20401.228609 eV Core-core repulsion = 17049.316326 eV Total energy + Delta-G solvation = -3351.912283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24074 -39.35804 -37.96694 -37.02907 -36.10317 -34.36412 -33.87151 -30.38352 -29.80665 -26.96121 -26.85103 -25.48974 -22.58997 -21.31427 -20.92677 -19.64679 -18.70165 -18.29138 -17.47961 -17.10097 -17.01433 -16.80902 -16.66497 -16.46518 -15.50835 -15.09993 -14.70657 -14.28621 -14.22611 -13.99607 -13.88676 -13.75687 -13.68689 -13.56595 -13.13356 -13.07365 -13.00243 -12.61067 -12.50780 -12.39419 -12.04526 -11.97958 -11.74899 -11.53814 -11.45852 -11.25795 -11.04559 -10.74488 -10.53847 -10.08762 -8.20252 -6.29883 -0.89305 1.40019 1.40722 1.52307 1.64067 1.84875 2.14568 2.42133 2.61301 2.91238 3.12933 3.24872 3.44356 3.64455 3.89797 3.95866 4.13443 4.24414 4.27446 4.29794 4.54579 4.56654 4.68505 4.74376 4.85228 4.90698 4.99412 5.01197 5.04138 5.13004 5.21184 5.52802 5.57659 5.77081 5.88191 6.28312 6.57585 6.86016 7.29633 7.38933 8.91196 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.048382 B = 0.002343 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.583560 B =11949.403567 C =12089.786219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.428 3.572 3 O -0.980 6.980 4 O -0.985 6.985 5 C -0.587 4.587 6 H 0.185 0.815 7 C -0.118 4.118 8 C 0.117 3.883 9 H 0.088 0.912 10 N -0.700 5.700 11 C 0.519 3.481 12 O -0.582 6.582 13 C -0.130 4.130 14 C -0.083 4.083 15 C 0.026 3.974 16 C -0.548 4.548 17 H 0.050 0.950 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.960 3.040 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.125 4.125 25 H 0.149 0.851 26 H 0.135 0.865 27 H 0.153 0.847 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.419 0.581 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.002 0.998 36 H 0.001 0.999 37 H 0.265 0.735 38 H 0.101 0.899 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 7.330 -24.852 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.616 3.384 3 O -0.977 6.977 4 O -0.982 6.982 5 C -0.697 4.697 6 H 0.203 0.797 7 C -0.157 4.157 8 C 0.010 3.990 9 H 0.106 0.894 10 N -0.353 5.353 11 C 0.308 3.692 12 O -0.461 6.461 13 C -0.170 4.170 14 C -0.122 4.122 15 C -0.011 4.011 16 C -0.586 4.586 17 H 0.069 0.931 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.785 3.215 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.165 4.165 25 H 0.167 0.833 26 H 0.153 0.847 27 H 0.171 0.829 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.257 0.743 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.826 8.210 -25.128 26.872 hybrid contribution -0.436 -0.596 1.410 1.591 sum -5.262 7.614 -23.718 25.460 Atomic orbital electron populations 1.30086 1.22242 1.13854 1.13084 1.07313 0.79879 0.74313 0.76875 1.93549 1.81042 1.36184 1.86952 1.93544 1.81062 1.67676 1.55959 1.31736 1.06674 1.13217 1.18113 0.79749 1.23063 0.92058 1.05582 0.94949 1.21727 0.97921 0.89067 0.90269 0.89417 1.45530 1.69922 1.14681 1.05154 1.21069 0.75200 0.89826 0.83127 1.90678 1.48240 1.31946 1.75252 1.21686 1.05361 0.96108 0.93856 1.21165 1.00006 0.98020 0.92979 1.19020 0.95484 0.93280 0.93348 1.21708 1.45999 0.97135 0.93715 0.93127 1.25890 0.94855 0.94895 1.03823 1.70061 1.48237 1.04185 1.34479 0.85520 0.78760 0.77919 0.79309 1.19674 1.20362 1.19359 1.23296 1.00401 0.98707 0.94088 0.83307 0.84685 0.82874 0.87462 0.87424 0.74318 0.87010 0.87340 0.94294 0.94046 0.97929 0.98102 0.92665 0.88083 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.80 10.62 113.37 1.20 -0.60 16 2 S 2.43 25.71 5.30 -56.49 -0.30 25.41 16 3 O -0.98 -18.43 17.35 -127.37 -2.21 -20.64 16 4 O -0.99 -18.60 18.10 -127.37 -2.30 -20.91 16 5 C -0.59 -4.31 4.05 31.21 0.13 -4.18 16 6 H 0.19 0.12 8.14 -2.39 -0.02 0.10 16 7 C -0.12 -1.33 7.41 31.12 0.23 -1.10 16 8 C 0.12 1.93 4.32 45.52 0.20 2.12 16 9 H 0.09 1.92 7.46 -2.39 -0.02 1.90 16 10 N -0.70 -12.36 5.26 -440.03 -2.32 -14.68 16 11 C 0.52 14.64 7.83 87.66 0.69 15.33 16 12 O -0.58 -22.06 15.58 -3.01 -0.05 -22.11 16 13 C -0.13 -3.84 5.70 29.85 0.17 -3.67 16 14 C -0.08 -3.53 4.44 30.59 0.14 -3.40 16 15 C 0.03 1.33 4.97 29.85 0.15 1.48 16 16 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 17 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 18 C 0.00 0.19 5.46 84.65 0.46 0.65 16 19 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 20 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 C -0.13 -1.40 7.43 31.21 0.23 -1.17 16 25 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.11 1.22 8.10 -2.39 -0.02 1.20 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.42 4.34 8.70 -92.71 -0.81 3.54 16 31 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 34 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.11 1.27 7.50 -2.39 -0.02 1.25 16 Total: -1.00 -85.72 342.53 -0.81 -86.52 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 0.23 Total: 1.23 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 3.83 Total: -26.11 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -2.03 Total: -70.17 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: -4.56 Total: -63.65 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 25.71 SS G_CDS: -0.30 Total: 25.41 kcal Total: -85.72 -0.81 -86.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882667619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.432 kcal (2) G-P(sol) polarization free energy of solvation -85.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds