Wall clock time and date at job start Tue Mar 31 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48502 * 109.46976 * 272.81577 * 3 2 1 5 5 H 1.48504 * 109.46891 * 32.81312 * 3 2 1 6 6 H 1.48493 * 109.47212 * 152.81136 * 3 2 1 7 7 C 1.40032 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99735 * 340.66136 * 7 2 1 9 9 C 1.41545 * 120.00144 * 160.38159 * 7 2 1 10 10 C 1.41170 * 120.99358 * 333.60168 * 9 7 2 11 11 C 1.36588 * 119.12180 * 179.72321 * 10 9 7 12 12 N 1.32066 * 121.26287 * 0.56513 * 11 10 9 13 13 C 1.32489 * 122.22719 * 359.70582 * 12 11 10 14 14 N 1.39466 * 119.65064 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99428 * 354.62276 * 14 13 12 16 16 O 1.21574 * 120.00424 * 355.23590 * 15 14 13 17 17 N 1.34781 * 119.99688 * 175.23413 * 15 14 13 18 18 C 1.46982 * 127.25572 * 359.68602 * 17 15 14 19 19 C 1.50583 * 107.13604 * 179.91264 * 18 17 15 20 20 C 1.30393 * 110.11987 * 0.36785 * 19 18 17 21 21 C 1.46978 * 127.25306 * 179.97438 * 17 15 14 22 22 H 1.09000 * 109.90658 * 299.34349 * 21 17 15 23 23 C 1.53002 * 109.90661 * 60.58771 * 21 17 15 24 24 O 1.42902 * 109.46641 * 64.99832 * 23 21 17 25 25 C 1.38642 * 120.70630 * 0.02562 * 13 12 11 26 26 H 0.97003 * 119.99914 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.43661 * 359.96914 * 10 9 7 28 28 H 1.08000 * 119.36809 * 180.27163 * 11 10 9 29 29 H 0.96998 * 120.00558 * 174.62481 * 14 13 12 30 30 H 1.09008 * 109.90228 * 299.41474 * 18 17 15 31 31 H 1.08997 * 109.90550 * 60.65200 * 18 17 15 32 32 H 1.08005 * 124.93673 * 180.14188 * 19 18 17 33 33 H 1.07992 * 124.94265 * 179.75437 * 20 19 18 34 34 H 1.08999 * 109.47254 * 184.99734 * 23 21 17 35 35 H 1.09000 * 109.46782 * 305.00310 * 23 21 17 36 36 H 0.96702 * 113.99496 * 180.02562 * 24 23 21 37 37 H 1.08004 * 120.66481 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4294 2.0807 -1.3984 5 1 1.4699 2.6347 0.7587 6 1 3.5674 1.4237 0.6397 7 6 2.0076 -1.2127 0.0005 8 1 1.5132 -2.1215 0.3107 9 6 3.3614 -1.2485 -0.4110 10 6 3.8730 -0.2893 -1.3116 11 6 5.1870 -0.3565 -1.6787 12 7 5.9802 -1.3057 -1.2161 13 6 5.5533 -2.2347 -0.3735 14 7 6.4379 -3.2122 0.0817 15 6 7.6883 -3.2745 -0.4175 16 8 8.0181 -2.5357 -1.3249 17 7 8.5731 -4.1557 0.0895 18 6 8.3493 -5.1124 1.1827 19 6 9.6346 -5.8724 1.3772 20 6 10.5371 -5.4501 0.5362 21 6 9.9669 -4.3586 -0.3305 22 1 9.9989 -4.6609 -1.3773 23 6 10.7637 -3.0674 -0.1332 24 8 10.8348 -2.7600 1.2606 25 6 4.2367 -2.2456 0.0608 26 1 -0.4850 0.8401 -0.0004 27 1 3.2350 0.4897 -1.7020 28 1 5.5836 0.3779 -2.3640 29 1 6.1532 -3.8473 0.7573 30 1 8.0903 -4.5776 2.0966 31 1 7.5493 -5.8022 0.9142 32 1 9.7878 -6.6514 2.1096 33 1 11.5466 -5.8281 0.4708 34 1 11.7711 -3.1981 -0.5283 35 1 10.2695 -2.2514 -0.6605 36 1 11.3264 -1.9516 1.4604 37 1 3.8894 -3.0035 0.7474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889253851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:44 Heat of formation + Delta-G solvation = 6.008770 kcal Electronic energy + Delta-G solvation = -22508.319007 eV Core-core repulsion = 19059.194741 eV Total energy + Delta-G solvation = -3449.124266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57284 -39.01332 -37.54794 -36.22086 -34.47775 -33.68803 -31.86873 -31.22185 -30.23554 -28.64983 -26.00043 -25.47268 -23.45591 -21.94222 -21.49134 -19.76458 -19.31441 -18.34235 -17.76804 -17.25509 -16.06393 -15.79541 -15.50879 -15.24816 -14.74732 -14.29299 -14.22020 -13.97923 -13.88413 -13.40928 -13.09393 -12.83762 -12.79436 -12.56683 -12.45751 -12.10049 -11.55231 -11.16111 -11.04901 -10.85063 -10.70143 -10.15258 -9.92802 -9.77851 -9.66830 -9.62436 -9.35834 -8.36128 -8.24130 -7.85847 -7.21747 -7.08240 -4.72647 1.96989 2.43026 2.63221 2.67163 3.08684 3.18526 3.29061 3.66958 3.91598 4.04963 4.20333 4.46612 4.58388 4.61425 5.13421 5.16560 5.31458 5.43576 5.45115 5.49111 5.54021 5.65642 5.73978 6.06598 6.18712 6.36215 6.36833 6.49667 6.58503 6.62358 6.96476 7.15064 7.20756 7.28430 7.57527 7.66770 7.95137 8.15677 8.24366 8.45998 8.66175 8.98508 9.51349 9.92511 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032347 B = 0.003774 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.408367 B = 7418.113164 C = 7798.960556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.088 3.912 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.247 1.247 7 C -0.438 4.438 8 H 0.094 0.906 9 C 0.130 3.870 10 C -0.307 4.307 11 C 0.141 3.859 12 N -0.558 5.558 13 C 0.380 3.620 14 N -0.667 5.667 15 C 0.724 3.276 16 O -0.527 6.527 17 N -0.633 5.633 18 C 0.123 3.877 19 C -0.161 4.161 20 C -0.152 4.152 21 C 0.183 3.817 22 H 0.093 0.907 23 C 0.065 3.935 24 O -0.565 6.565 25 C -0.298 4.298 26 H 0.288 0.712 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.404 0.596 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.375 0.625 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.594 -8.038 3.514 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.134 4.134 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.170 1.170 7 C -0.468 4.468 8 H 0.112 0.888 9 C 0.122 3.878 10 C -0.330 4.330 11 C -0.012 4.012 12 N -0.277 5.277 13 C 0.154 3.846 14 N -0.314 5.314 15 C 0.425 3.575 16 O -0.397 6.397 17 N -0.375 5.375 18 C 0.000 4.000 19 C -0.179 4.179 20 C -0.170 4.170 21 C 0.078 3.922 22 H 0.111 0.889 23 C -0.014 4.014 24 O -0.370 6.370 25 C -0.324 4.324 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.145 0.855 29 H 0.239 0.761 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.221 0.779 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.053 -7.903 2.561 18.969 hybrid contribution -0.515 0.811 0.665 1.169 sum 16.539 -7.092 3.227 18.282 Atomic orbital electron populations 1.69657 1.08257 1.30712 1.33283 1.26211 0.94705 1.02073 0.90368 0.86246 0.80905 0.79216 0.79143 1.19224 1.21814 1.16999 1.19477 0.93194 0.96395 1.37687 0.88846 1.17628 0.92581 0.89459 0.88131 1.21705 0.97622 1.06160 1.07530 1.21527 0.90006 0.93928 0.95735 1.67272 1.37741 1.05971 1.16722 1.17818 0.86117 0.88056 0.92646 1.42565 1.11002 1.33975 1.43858 1.15294 0.79945 0.80055 0.82162 1.91003 1.76885 1.42177 1.29662 1.47313 1.11829 1.39828 1.38497 1.20751 0.97157 0.91039 0.91037 1.23115 0.94799 1.00170 0.99786 1.23052 0.99620 0.96697 0.97637 1.20228 0.80279 0.93116 0.98563 0.88939 1.22521 0.98256 0.97742 0.82870 1.86489 1.78926 1.47553 1.23992 1.21097 0.91701 1.07937 1.11711 0.90100 0.87311 0.85525 0.76076 0.90696 0.90926 0.83941 0.83969 0.93206 0.91390 0.77883 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.53 13.92 55.55 0.77 -19.75 16 2 C 0.09 2.25 5.42 -17.34 -0.09 2.15 16 3 Si 0.92 20.57 24.52 -169.99 -4.17 16.40 16 4 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.25 -5.77 6.95 56.52 0.39 -5.38 16 7 C -0.44 -11.59 9.63 -37.65 -0.36 -11.96 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.13 3.33 5.19 -106.55 -0.55 2.77 16 10 C -0.31 -7.55 7.33 -39.07 -0.29 -7.84 16 11 C 0.14 3.36 11.10 -18.05 -0.20 3.16 16 12 N -0.56 -13.91 7.89 -12.76 -0.10 -14.01 16 13 C 0.38 8.82 7.41 -154.67 -1.15 7.67 16 14 N -0.67 -12.69 5.36 -15.86 -0.08 -12.78 16 15 C 0.72 13.92 8.29 -86.91 -0.72 13.20 16 16 O -0.53 -12.09 13.73 5.30 0.07 -12.01 16 17 N -0.63 -9.36 3.06 -173.87 -0.53 -9.90 16 18 C 0.12 1.38 6.34 -4.99 -0.03 1.34 16 19 C -0.16 -1.45 10.87 -35.91 -0.39 -1.85 16 20 C -0.15 -1.43 9.62 -35.91 -0.35 -1.78 16 21 C 0.18 2.27 3.41 -68.87 -0.23 2.04 16 22 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 23 C 0.06 0.79 6.72 37.16 0.25 1.04 16 24 O -0.56 -6.92 13.05 -35.23 -0.46 -7.38 16 25 C -0.30 -7.01 9.74 -38.46 -0.37 -7.39 16 26 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 27 H 0.11 2.61 4.41 -52.49 -0.23 2.37 16 28 H 0.13 2.65 8.06 -52.49 -0.42 2.22 16 29 H 0.40 6.19 7.81 -40.82 -0.32 5.87 16 30 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.04 6.79 -51.93 -0.35 0.69 16 36 H 0.38 3.11 9.12 45.56 0.42 3.52 16 37 H 0.11 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -33.46 312.48 -7.75 -41.21 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -3.47 Total: 10.92 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -4.49 Total: 2.58 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.06 Total: -56.44 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.39 Total: -19.39 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.17 Total: 16.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.46 -7.75 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889253851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.222 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds