Wall clock time and date at job start Tue Mar 31 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48502 * 109.46976 * 272.81577 * 3 2 1 5 5 H 1.48504 * 109.46891 * 32.81312 * 3 2 1 6 6 H 1.48493 * 109.47212 * 152.81136 * 3 2 1 7 7 C 1.40032 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99735 * 340.66136 * 7 2 1 9 9 C 1.41545 * 120.00144 * 160.38159 * 7 2 1 10 10 C 1.41170 * 120.99358 * 333.60168 * 9 7 2 11 11 C 1.36588 * 119.12180 * 179.72321 * 10 9 7 12 12 N 1.32066 * 121.26287 * 0.56513 * 11 10 9 13 13 C 1.32489 * 122.22719 * 359.70582 * 12 11 10 14 14 N 1.39466 * 119.65064 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99428 * 354.62276 * 14 13 12 16 16 O 1.21574 * 120.00424 * 355.23590 * 15 14 13 17 17 N 1.34781 * 119.99688 * 175.23413 * 15 14 13 18 18 C 1.46982 * 127.25572 * 359.68602 * 17 15 14 19 19 C 1.50583 * 107.13604 * 179.91264 * 18 17 15 20 20 C 1.30393 * 110.11987 * 0.36785 * 19 18 17 21 21 C 1.46978 * 127.25306 * 179.97438 * 17 15 14 22 22 H 1.09000 * 109.90658 * 299.34349 * 21 17 15 23 23 C 1.53002 * 109.90661 * 60.58771 * 21 17 15 24 24 O 1.42902 * 109.46641 * 64.99832 * 23 21 17 25 25 C 1.38642 * 120.70630 * 0.02562 * 13 12 11 26 26 H 0.97003 * 119.99914 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.43661 * 359.96914 * 10 9 7 28 28 H 1.08000 * 119.36809 * 180.27163 * 11 10 9 29 29 H 0.96998 * 120.00558 * 174.62481 * 14 13 12 30 30 H 1.09008 * 109.90228 * 299.41474 * 18 17 15 31 31 H 1.08997 * 109.90550 * 60.65200 * 18 17 15 32 32 H 1.08005 * 124.93673 * 180.14188 * 19 18 17 33 33 H 1.07992 * 124.94265 * 179.75437 * 20 19 18 34 34 H 1.08999 * 109.47254 * 184.99734 * 23 21 17 35 35 H 1.09000 * 109.46782 * 305.00310 * 23 21 17 36 36 H 0.96702 * 113.99496 * 180.02562 * 24 23 21 37 37 H 1.08004 * 120.66481 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4294 2.0807 -1.3984 5 1 1.4699 2.6347 0.7587 6 1 3.5674 1.4237 0.6397 7 6 2.0076 -1.2127 0.0005 8 1 1.5132 -2.1215 0.3107 9 6 3.3614 -1.2485 -0.4110 10 6 3.8730 -0.2893 -1.3116 11 6 5.1870 -0.3565 -1.6787 12 7 5.9802 -1.3057 -1.2161 13 6 5.5533 -2.2347 -0.3735 14 7 6.4379 -3.2122 0.0817 15 6 7.6883 -3.2745 -0.4175 16 8 8.0181 -2.5357 -1.3249 17 7 8.5731 -4.1557 0.0895 18 6 8.3493 -5.1124 1.1827 19 6 9.6346 -5.8724 1.3772 20 6 10.5371 -5.4501 0.5362 21 6 9.9669 -4.3586 -0.3305 22 1 9.9989 -4.6609 -1.3773 23 6 10.7637 -3.0674 -0.1332 24 8 10.8348 -2.7600 1.2606 25 6 4.2367 -2.2456 0.0608 26 1 -0.4850 0.8401 -0.0004 27 1 3.2350 0.4897 -1.7020 28 1 5.5836 0.3779 -2.3640 29 1 6.1532 -3.8473 0.7573 30 1 8.0903 -4.5776 2.0966 31 1 7.5493 -5.8022 0.9142 32 1 9.7878 -6.6514 2.1096 33 1 11.5466 -5.8281 0.4708 34 1 11.7711 -3.1981 -0.5283 35 1 10.2695 -2.2514 -0.6605 36 1 11.3264 -1.9516 1.4604 37 1 3.8894 -3.0035 0.7474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889253851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:43 Heat of formation + Delta-G solvation = -18.981458 kcal Electronic energy + Delta-G solvation = -22509.402664 eV Core-core repulsion = 19059.194741 eV Total energy + Delta-G solvation = -3450.207923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.86739 -40.57226 -39.01165 -37.16356 -36.24470 -35.47723 -33.27954 -32.88435 -31.23593 -30.28799 -27.94280 -26.43948 -24.76772 -23.75126 -23.02658 -20.94158 -20.53031 -19.87367 -19.19459 -18.30612 -17.87257 -17.27788 -17.00930 -16.52401 -16.18546 -15.93520 -15.58918 -15.37544 -15.10202 -14.86226 -14.61456 -14.42137 -14.26104 -13.78211 -13.43385 -13.37427 -13.00312 -12.87489 -12.78489 -12.53833 -11.89469 -11.73439 -11.55624 -11.46540 -11.20091 -10.88083 -10.57092 -10.18898 -9.71623 -9.43881 -9.01998 -8.95294 -6.73246 0.59117 0.75624 1.27697 1.27815 1.34022 1.41868 1.48803 2.08208 2.14943 2.67009 2.79413 3.28644 3.54258 3.62340 3.79702 3.99451 4.20525 4.31944 4.44628 4.48636 4.58196 4.60088 4.60857 4.65995 4.67178 4.75233 4.91016 5.12548 5.23450 5.27629 5.40271 5.44049 5.70404 5.87110 5.91398 6.08761 6.25235 6.51807 6.67204 6.78122 6.81989 7.44197 7.74030 8.04720 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032347 B = 0.003774 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.408367 B = 7418.113164 C = 7798.960556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.059 3.941 3 Si 0.967 3.033 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.070 0.930 9 C 0.116 3.884 10 C -0.317 4.317 11 C 0.137 3.863 12 N -0.577 5.577 13 C 0.380 3.620 14 N -0.658 5.658 15 C 0.718 3.282 16 O -0.571 6.571 17 N -0.631 5.631 18 C 0.111 3.889 19 C -0.153 4.153 20 C -0.151 4.151 21 C 0.167 3.833 22 H 0.090 0.910 23 C 0.070 3.930 24 O -0.578 6.578 25 C -0.304 4.304 26 H 0.300 0.700 27 H 0.115 0.885 28 H 0.155 0.845 29 H 0.421 0.579 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.082 0.918 35 H 0.029 0.971 36 H 0.391 0.609 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.616 -8.764 4.287 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.160 4.160 3 Si 0.791 3.209 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.088 0.912 9 C 0.108 3.892 10 C -0.340 4.340 11 C -0.016 4.016 12 N -0.297 5.297 13 C 0.152 3.848 14 N -0.307 5.307 15 C 0.420 3.580 16 O -0.445 6.445 17 N -0.371 5.371 18 C -0.011 4.011 19 C -0.171 4.171 20 C -0.169 4.169 21 C 0.063 3.937 22 H 0.108 0.892 23 C -0.009 4.009 24 O -0.385 6.385 25 C -0.330 4.330 26 H 0.111 0.889 27 H 0.133 0.867 28 H 0.172 0.828 29 H 0.259 0.741 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.195 0.805 33 H 0.191 0.809 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.239 0.761 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.092 -8.684 3.379 21.245 hybrid contribution -1.044 0.927 0.447 1.466 sum 18.048 -7.758 3.826 20.014 Atomic orbital electron populations 1.69654 1.09120 1.32176 1.33946 1.26796 0.95270 1.04189 0.89778 0.85502 0.79052 0.76501 0.79883 1.17732 1.19830 1.18790 1.19482 0.94037 0.96331 1.39763 0.91195 1.17826 0.92522 0.90435 0.88408 1.21809 0.98141 1.06385 1.07714 1.21974 0.89749 0.94142 0.95727 1.67399 1.38376 1.06592 1.17291 1.18013 0.86681 0.88244 0.91906 1.42436 1.10815 1.33428 1.44040 1.15419 0.80174 0.80468 0.81950 1.90965 1.77661 1.44217 1.31643 1.47281 1.12154 1.38897 1.38718 1.21076 0.99375 0.90854 0.89824 1.23351 0.93101 1.00369 1.00291 1.23185 1.01067 0.95647 0.96990 1.20564 0.79102 0.94588 0.99431 0.89228 1.22424 0.99511 0.96302 0.82665 1.86434 1.79531 1.48708 1.23818 1.21282 0.91798 1.07987 1.11952 0.88888 0.86743 0.82821 0.74126 0.90573 0.89371 0.80549 0.80865 0.89954 0.95298 0.76072 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.80 13.92 21.84 0.30 -42.50 16 2 C 0.06 3.02 5.42 85.29 0.46 3.48 16 3 Si 0.97 41.79 24.52 68.60 1.68 43.47 16 4 H -0.25 -10.27 6.54 99.48 0.65 -9.62 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.26 -12.07 6.95 99.48 0.69 -11.37 16 7 C -0.47 -25.27 9.63 23.52 0.23 -25.04 16 8 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 9 C 0.12 6.00 5.19 -21.11 -0.11 5.89 16 10 C -0.32 -15.52 7.33 22.60 0.17 -15.35 16 11 C 0.14 6.46 11.10 84.27 0.94 7.40 16 12 N -0.58 -28.72 7.89 -194.27 -1.53 -30.26 16 13 C 0.38 17.55 7.41 132.76 0.98 18.53 16 14 N -0.66 -24.75 5.36 -322.36 -1.73 -26.47 16 15 C 0.72 27.48 8.29 179.05 1.48 28.97 16 16 O -0.57 -26.55 13.73 -3.95 -0.05 -26.61 16 17 N -0.63 -17.93 3.06 -822.26 -2.52 -20.45 16 18 C 0.11 2.20 6.34 85.50 0.54 2.75 16 19 C -0.15 -2.20 10.87 26.24 0.29 -1.92 16 20 C -0.15 -2.32 9.62 26.24 0.25 -2.07 16 21 C 0.17 3.88 3.41 44.12 0.15 4.03 16 22 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 23 C 0.07 1.62 6.72 71.98 0.48 2.11 16 24 O -0.58 -13.16 13.05 -148.98 -1.94 -15.10 16 25 C -0.30 -14.35 9.74 23.00 0.22 -14.12 16 26 H 0.30 13.86 8.29 -92.71 -0.77 13.09 16 27 H 0.12 5.39 4.41 -2.91 -0.01 5.37 16 28 H 0.15 6.22 8.06 -2.91 -0.02 6.20 16 29 H 0.42 12.44 7.81 -92.71 -0.72 11.72 16 30 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 0.90 6.79 -2.39 -0.02 0.88 16 36 H 0.39 5.89 9.12 -74.06 -0.68 5.21 16 37 H 0.13 5.31 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -73.32 312.48 -0.05 -73.37 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.34 Total: 29.90 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 6.09 Total: 14.64 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -5.47 Total: -119.67 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -2.00 Total: -41.71 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.68 Total: 43.47 kcal Total: -73.32 -0.05 -73.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889253851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.390 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds