Wall clock time and date at job start Tue Mar 31 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86805 * 119.99601 * 2 1 4 4 H 1.48501 * 109.47041 * 274.98332 * 3 2 1 5 5 H 1.48493 * 109.47355 * 34.98905 * 3 2 1 6 6 H 1.48502 * 109.46681 * 154.98703 * 3 2 1 7 7 C 1.40032 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00408 * 144.37365 * 7 2 1 9 9 C 1.41545 * 119.99500 * 324.64942 * 7 2 1 10 10 C 1.41159 * 121.00146 * 344.28969 * 9 7 2 11 11 C 1.36599 * 119.12905 * 179.76966 * 10 9 7 12 12 N 1.32068 * 121.25339 * 0.51916 * 11 10 9 13 13 C 1.32488 * 122.23376 * 359.72881 * 12 11 10 14 14 N 1.39458 * 119.64839 * 180.02562 * 13 12 11 15 15 C 1.34783 * 119.99985 * 356.06535 * 14 13 12 16 16 O 1.21574 * 119.99793 * 6.16615 * 15 14 13 17 17 N 1.34772 * 119.99721 * 186.15707 * 15 14 13 18 18 C 1.48143 * 127.84307 * 0.03074 * 17 15 14 19 19 C 1.54391 * 104.61900 * 140.41170 * 18 17 15 20 20 H 1.09000 * 117.61559 * 244.78240 * 19 18 17 21 21 C 1.53002 * 118.12158 * 87.19236 * 19 18 17 22 22 C 1.53004 * 60.55549 * 268.45794 * 21 19 18 23 23 O 1.42900 * 120.26344 * 248.52035 * 22 21 19 24 24 C 1.48154 * 127.83564 * 179.70879 * 17 15 14 25 25 C 1.38648 * 120.70380 * 0.02562 * 13 12 11 26 26 H 0.96995 * 120.00596 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.43586 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.37015 * 180.22775 * 11 10 9 29 29 H 0.97000 * 120.00241 * 176.07348 * 14 13 12 30 30 H 1.08997 * 110.41095 * 259.19809 * 18 17 15 31 31 H 1.09002 * 110.40560 * 21.62938 * 18 17 15 32 32 H 1.08994 * 117.44201 * 16.11115 * 21 19 18 33 33 H 1.09003 * 117.43721 * 160.81170 * 21 19 18 34 34 H 0.96698 * 114.00274 * 251.03932 * 23 22 21 35 35 H 1.09003 * 110.40154 * 338.37231 * 24 17 15 36 36 H 1.08991 * 110.40962 * 100.80140 * 24 17 15 37 37 H 1.07995 * 120.66220 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1073 -1.3948 5 1 1.4955 2.6200 0.8028 6 1 3.5876 1.4121 0.5920 7 6 2.0077 -1.2127 0.0005 8 1 2.9360 -1.3004 -0.5442 9 6 1.4957 -2.3251 0.7103 10 6 0.4811 -2.1654 1.6787 11 6 0.0116 -3.2660 2.3376 12 7 0.4960 -4.4699 2.0922 13 6 1.4514 -4.6786 1.1984 14 7 1.9229 -5.9731 0.9820 15 6 1.4639 -6.9922 1.7353 16 8 0.5595 -6.8045 2.5257 17 7 2.0076 -8.2192 1.6121 18 6 3.1070 -8.6401 0.7128 19 6 3.9555 -9.6106 1.5624 20 1 4.9756 -9.3115 1.8035 21 6 3.5614 -11.0889 1.5779 22 6 2.9891 -10.1467 2.6389 23 8 3.3825 -10.2782 4.0064 24 6 1.6456 -9.4518 2.3501 25 6 1.9876 -3.6237 0.4759 26 1 -0.4851 0.8400 -0.0004 27 1 0.0789 -1.1863 1.8934 28 1 -0.7672 -3.1488 3.0766 29 1 2.5812 -6.1401 0.2894 30 1 2.7072 -9.1515 -0.1628 31 1 3.7027 -7.7783 0.4117 32 1 2.8848 -11.4365 0.7972 33 1 4.3165 -11.8067 1.8983 34 1 2.6887 -10.6253 4.5837 35 1 1.1400 -9.2017 3.2828 36 1 1.0141 -10.0920 1.7342 37 1 2.7661 -3.7946 -0.2528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889254329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:49 Heat of formation + Delta-G solvation = -7.788393 kcal Electronic energy + Delta-G solvation = -22148.135925 eV Core-core repulsion = 18698.413369 eV Total energy + Delta-G solvation = -3449.722556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.81796 -40.62587 -39.35402 -36.59001 -36.31063 -35.39802 -34.07690 -32.67263 -30.55503 -29.17409 -27.96199 -27.10163 -23.69232 -23.53620 -22.51184 -21.32535 -21.04314 -19.84629 -19.15643 -18.03381 -17.63644 -17.06490 -16.90899 -16.36781 -16.13705 -15.88115 -15.72744 -15.24251 -14.84450 -14.63328 -14.39146 -14.33044 -14.01676 -13.80841 -13.28714 -13.17476 -13.10223 -12.68014 -12.64857 -12.21174 -12.06145 -11.97643 -11.54064 -11.47563 -11.21521 -11.03342 -10.34483 -10.10647 -9.83178 -9.58864 -8.92651 -8.82995 -6.54443 0.83180 0.98601 1.33800 1.39466 1.51245 1.62463 2.14706 2.18620 2.40277 2.68623 2.79321 3.00621 3.35344 3.64837 3.74965 3.83336 4.08347 4.10619 4.34617 4.56273 4.59280 4.66934 4.76461 4.82142 4.83086 4.91089 4.97112 4.99354 5.09538 5.15730 5.18976 5.50057 5.58708 5.86434 5.87684 6.19667 6.48600 6.70746 6.75952 6.78225 6.84688 7.50849 7.90281 8.08485 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036427 B = 0.003213 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.473717 B = 8711.442109 C = 9102.002411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.054 3.946 3 Si 0.980 3.020 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.484 4.484 8 H 0.091 0.909 9 C 0.120 3.880 10 C -0.266 4.266 11 C 0.106 3.894 12 N -0.593 5.593 13 C 0.370 3.630 14 N -0.656 5.656 15 C 0.712 3.288 16 O -0.579 6.579 17 N -0.643 5.643 18 C 0.121 3.879 19 C -0.171 4.171 20 H 0.123 0.877 21 C -0.108 4.108 22 C 0.010 3.990 23 O -0.540 6.540 24 C 0.135 3.865 25 C -0.330 4.330 26 H 0.299 0.701 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.420 0.580 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.628 -16.325 -1.489 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.170 4.170 3 Si 0.798 3.202 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.512 4.512 8 H 0.109 0.891 9 C 0.112 3.888 10 C -0.290 4.290 11 C -0.043 4.043 12 N -0.314 5.314 13 C 0.142 3.858 14 N -0.306 5.306 15 C 0.414 3.586 16 O -0.453 6.453 17 N -0.383 5.383 18 C -0.001 4.001 19 C -0.190 4.190 20 H 0.141 0.859 21 C -0.145 4.145 22 C -0.033 4.033 23 O -0.349 6.349 24 C 0.012 3.988 25 C -0.356 4.356 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.153 0.847 29 H 0.258 0.742 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.873 -16.497 -0.639 17.883 hybrid contribution 0.199 1.383 -0.257 1.420 sum 7.072 -15.114 -0.896 16.711 Atomic orbital electron populations 1.69911 1.09968 1.32203 1.28237 1.26947 0.94965 1.05107 0.89931 0.85250 0.79652 0.75330 0.79925 1.17873 1.18817 1.18054 1.19848 1.07729 0.95082 1.28586 0.89088 1.17847 0.89162 0.92031 0.89766 1.21685 1.05473 0.98708 1.03095 1.21798 0.97406 0.87626 0.97518 1.67307 1.16481 1.24946 1.22659 1.18015 0.91814 0.83451 0.92565 1.42382 1.45588 1.04198 1.38432 1.15650 0.81895 0.79692 0.81354 1.90985 1.31951 1.81952 1.40427 1.48375 1.39154 1.06680 1.44093 1.22167 0.87054 0.98323 0.92529 1.24087 0.99473 0.96394 0.99036 0.85875 1.23699 1.02162 0.90718 0.97956 1.22724 0.93438 1.05589 0.81516 1.86385 1.43404 1.87914 1.17166 1.22014 0.94886 0.83909 0.97963 1.21150 1.12054 0.91741 1.10674 0.88967 0.87474 0.84687 0.74170 0.87475 0.89326 0.85517 0.86015 0.74836 0.91162 0.87572 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.72 11.64 21.84 0.25 -38.47 16 2 C 0.05 2.55 4.82 85.29 0.41 2.97 16 3 Si 0.98 35.30 29.67 68.60 2.04 37.34 16 4 H -0.25 -8.60 7.11 99.48 0.71 -7.90 16 5 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.48 -25.01 9.01 23.52 0.21 -24.80 16 8 H 0.09 4.44 8.04 -2.91 -0.02 4.42 16 9 C 0.12 6.51 5.65 -21.11 -0.12 6.39 16 10 C -0.27 -14.49 8.88 22.60 0.20 -14.29 16 11 C 0.11 5.68 11.10 84.27 0.94 6.62 16 12 N -0.59 -32.65 7.86 -194.26 -1.53 -34.17 16 13 C 0.37 18.51 7.42 132.76 0.99 19.49 16 14 N -0.66 -26.11 5.36 -322.37 -1.73 -27.84 16 15 C 0.71 28.83 8.53 179.05 1.53 30.35 16 16 O -0.58 -29.38 14.87 -3.95 -0.06 -29.44 16 17 N -0.64 -18.25 3.32 -826.70 -2.74 -20.99 16 18 C 0.12 2.20 6.69 86.54 0.58 2.78 16 19 C -0.17 -2.82 7.13 -9.88 -0.07 -2.89 16 20 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 21 C -0.11 -1.18 10.07 30.60 0.31 -0.88 16 22 C 0.01 0.19 3.91 -10.02 -0.04 0.15 16 23 O -0.54 -11.23 13.97 -148.98 -2.08 -13.31 16 24 C 0.14 3.05 6.78 86.39 0.59 3.64 16 25 C -0.33 -16.48 9.74 23.00 0.22 -16.25 16 26 H 0.30 13.06 8.29 -92.71 -0.77 12.29 16 27 H 0.11 5.84 6.35 -2.91 -0.02 5.82 16 28 H 0.14 6.51 8.06 -2.91 -0.02 6.49 16 29 H 0.42 12.87 7.16 -92.71 -0.66 12.21 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.51 6.95 -2.39 -0.02 1.50 16 32 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.40 5.02 9.12 -74.06 -0.68 4.35 16 35 H 0.07 1.89 7.88 -2.39 -0.02 1.87 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -76.80 318.36 -0.32 -77.11 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.21 Total: 36.50 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.74 Total: 13.27 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -5.74 Total: -121.47 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -2.14 Total: -42.75 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.04 Total: 37.34 kcal Total: -76.80 -0.32 -77.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889254329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.326 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds