Wall clock time and date at job start Tue Mar 31 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48500 * 109.47058 * 270.00127 * 3 2 1 5 5 H 1.48500 * 109.47016 * 30.00076 * 3 2 1 6 6 H 1.48492 * 109.47178 * 150.00002 * 3 2 1 7 7 C 1.40026 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99863 * 167.60476 * 7 2 1 9 9 C 1.41539 * 120.00383 * 347.60335 * 7 2 1 10 10 C 1.41169 * 120.99776 * 338.62873 * 9 7 2 11 11 C 1.36592 * 119.12787 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25954 * 0.02562 * 11 10 9 13 13 C 1.32487 * 122.23030 * 359.97438 * 12 11 10 14 14 N 1.39463 * 119.65036 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99657 * 6.45519 * 14 13 12 16 16 O 1.21577 * 120.00066 * 355.30629 * 15 14 13 17 17 N 1.34769 * 119.99939 * 175.30940 * 15 14 13 18 18 C 1.48146 * 127.84018 * 0.02562 * 17 15 14 19 19 C 1.54390 * 104.62234 * 219.58757 * 18 17 15 20 20 H 1.09003 * 117.61477 * 115.21658 * 19 18 17 21 21 C 1.52995 * 118.12364 * 272.81217 * 19 18 17 22 22 C 1.52994 * 60.55656 * 91.53818 * 21 19 18 23 23 O 1.42907 * 119.53918 * 111.76753 * 22 21 19 24 24 C 1.48150 * 127.83672 * 179.70609 * 17 15 14 25 25 C 1.38639 * 120.70554 * 0.02562 * 13 12 11 26 26 H 0.96996 * 120.00287 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.43336 * 0.04844 * 10 9 7 28 28 H 1.07999 * 119.36528 * 179.97438 * 11 10 9 29 29 H 0.96992 * 120.00312 * 186.45119 * 14 13 12 30 30 H 1.08999 * 110.40779 * 338.37812 * 18 17 15 31 31 H 1.09004 * 110.40473 * 100.68317 * 18 17 15 32 32 H 1.08996 * 117.44287 * 199.19200 * 21 19 18 33 33 H 1.09001 * 117.44113 * 343.89077 * 21 19 18 34 34 H 0.96703 * 113.99993 * 109.29648 * 23 22 21 35 35 H 1.08999 * 110.40364 * 259.19526 * 24 17 15 36 36 H 1.08997 * 110.40700 * 21.63014 * 24 17 15 37 37 H 1.08002 * 120.66631 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0687 -1.2236 -0.2002 9 6 1.3247 -2.4241 0.2642 10 6 0.0913 -2.4288 0.9510 11 6 -0.5346 -3.6200 1.1855 12 7 -0.0075 -4.7620 0.7828 13 6 1.1465 -4.8179 0.1344 14 7 1.6539 -6.0538 -0.2657 15 6 0.9132 -7.1689 -0.1095 16 8 -0.1609 -7.1108 0.4572 17 7 1.3631 -8.3484 -0.5814 18 6 2.6347 -8.6173 -1.2922 19 6 2.2588 -9.6323 -2.3931 20 1 2.3589 -9.3128 -3.4305 21 6 2.2793 -11.1207 -2.0393 22 6 0.9819 -10.3265 -1.8754 23 8 -0.1265 -10.6027 -2.7342 24 6 0.7012 -9.6713 -0.5012 25 6 1.8556 -3.6610 -0.1497 26 1 -0.4850 0.8400 0.0004 27 1 -0.3516 -1.5027 1.2863 28 1 -1.4781 -3.6281 1.7110 29 1 2.5399 -6.1109 -0.6564 30 1 3.0229 -7.7008 -1.7367 31 1 3.3678 -9.0479 -0.6100 32 1 2.3321 -11.8322 -2.8632 33 1 2.8067 -11.4139 -1.1316 34 1 -0.8669 -11.0405 -2.2924 35 1 1.1363 -10.2659 0.3020 36 1 -0.3713 -9.5511 -0.3483 37 1 2.7961 -3.7072 -0.6787 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889254332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:52 Heat of formation + Delta-G solvation = 18.795402 kcal Electronic energy + Delta-G solvation = -22158.528470 eV Core-core repulsion = 18709.958674 eV Total energy + Delta-G solvation = -3448.569796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.63189 -39.16605 -37.72324 -35.64909 -34.49991 -33.62308 -33.00017 -30.64291 -28.90883 -28.09480 -26.12898 -25.83428 -22.11477 -21.72542 -21.47796 -20.46777 -19.53282 -18.21482 -17.72681 -17.00502 -16.00125 -15.89605 -15.29545 -15.01326 -14.49028 -14.28162 -14.14813 -13.98525 -13.66778 -13.30333 -13.06053 -12.93398 -12.37716 -12.34078 -12.12681 -11.93355 -11.45597 -11.44027 -11.21014 -10.95825 -10.61981 -10.39759 -10.04385 -9.76983 -9.72123 -9.46756 -9.38885 -8.65143 -8.02812 -7.71308 -7.01103 -6.75345 -4.62847 2.63864 2.72954 2.78078 3.01345 3.05503 3.14154 3.24167 3.64071 3.71682 3.84106 4.17974 4.19139 4.43365 4.63464 4.70716 4.84174 5.12253 5.33743 5.35447 5.43566 5.56944 5.65071 5.73492 5.82453 5.85025 6.16651 6.56236 6.61116 6.80146 6.91405 7.15652 7.23378 7.34505 7.45072 7.58065 7.90983 8.04817 8.27689 8.50465 8.74317 8.75938 9.07679 9.75885 10.06881 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034756 B = 0.003232 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.432565 B = 8661.595927 C = 9089.143638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.450 4.450 8 H 0.080 0.920 9 C 0.144 3.856 10 C -0.229 4.229 11 C 0.104 3.896 12 N -0.555 5.555 13 C 0.365 3.635 14 N -0.666 5.666 15 C 0.717 3.283 16 O -0.524 6.524 17 N -0.645 5.645 18 C 0.126 3.874 19 C -0.161 4.161 20 H 0.125 0.875 21 C -0.148 4.148 22 C 0.026 3.974 23 O -0.518 6.518 24 C 0.142 3.858 25 C -0.308 4.308 26 H 0.283 0.717 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.402 0.598 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.385 0.615 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 -15.506 -3.109 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.099 0.901 9 C 0.136 3.864 10 C -0.252 4.252 11 C -0.046 4.046 12 N -0.274 5.274 13 C 0.137 3.863 14 N -0.314 5.314 15 C 0.419 3.581 16 O -0.394 6.394 17 N -0.387 5.387 18 C 0.003 3.997 19 C -0.180 4.180 20 H 0.143 0.857 21 C -0.186 4.186 22 C -0.017 4.017 23 O -0.323 6.323 24 C 0.018 3.982 25 C -0.334 4.334 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.236 0.764 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.234 0.766 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.573 -15.681 -2.882 16.587 hybrid contribution 0.942 1.251 -0.336 1.601 sum 5.515 -14.430 -3.218 15.780 Atomic orbital electron populations 1.69751 1.07658 1.29385 1.34334 1.26001 0.94849 1.01629 0.91963 0.86191 0.80461 0.80080 0.79306 1.19364 1.19953 1.18382 1.19588 0.96414 0.90241 1.41882 0.90144 1.17589 0.91006 0.91380 0.86465 1.22215 0.99294 0.98667 1.05037 1.21640 0.97950 0.87811 0.97222 1.67186 1.12119 1.29508 1.18619 1.17744 0.91835 0.82162 0.94587 1.42552 1.19289 1.04733 1.64837 1.15485 0.84048 0.78693 0.79839 1.91035 1.20713 1.82997 1.44672 1.48376 1.21607 1.06599 1.62112 1.21835 0.87007 0.98329 0.92538 1.24015 1.00176 0.93178 1.00629 0.85684 1.23619 0.98134 0.93088 1.03720 1.22865 0.83420 1.03410 0.91967 1.86447 1.27530 1.81676 1.36695 1.21923 1.00317 0.82611 0.93392 1.21115 1.04540 0.91824 1.15961 0.90602 0.84506 0.86040 0.76370 0.89859 0.90510 0.87396 0.88017 0.76596 0.90193 0.88904 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.76 10.52 55.55 0.58 -19.18 16 2 C 0.07 1.82 5.31 -17.35 -0.09 1.73 16 3 Si 0.92 17.99 29.58 -169.99 -5.03 12.96 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.45 -11.61 9.15 -37.65 -0.34 -11.95 16 8 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 9 C 0.14 3.83 5.65 -106.55 -0.60 3.23 16 10 C -0.23 -6.06 8.78 -39.06 -0.34 -6.40 16 11 C 0.10 2.68 11.10 -18.04 -0.20 2.48 16 12 N -0.55 -14.74 7.86 -12.76 -0.10 -14.84 16 13 C 0.37 8.91 7.42 -154.68 -1.15 7.76 16 14 N -0.67 -13.14 5.36 -15.87 -0.09 -13.23 16 15 C 0.72 14.33 8.53 -86.92 -0.74 13.59 16 16 O -0.52 -12.84 14.87 5.30 0.08 -12.76 16 17 N -0.65 -9.43 3.31 -174.75 -0.58 -10.01 16 18 C 0.13 1.30 6.68 -2.41 -0.02 1.29 16 19 C -0.16 -1.56 7.13 -89.22 -0.64 -2.19 16 20 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 21 C -0.15 -1.12 10.05 -26.74 -0.27 -1.39 16 22 C 0.03 0.27 3.93 -89.00 -0.35 -0.08 16 23 O -0.52 -5.71 13.98 -35.23 -0.49 -6.20 16 24 C 0.14 1.67 6.85 -2.18 -0.01 1.66 16 25 C -0.31 -7.55 9.74 -38.46 -0.37 -7.92 16 26 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 27 H 0.14 3.65 5.83 -52.49 -0.31 3.35 16 28 H 0.12 2.82 8.06 -52.49 -0.42 2.39 16 29 H 0.40 6.26 7.14 -40.82 -0.29 5.97 16 30 H 0.08 0.80 6.93 -51.93 -0.36 0.44 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.39 2.55 9.12 45.56 0.42 2.97 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.22 7.88 -51.93 -0.41 0.81 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -34.39 317.01 -9.43 -43.82 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -3.46 Total: 12.86 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -5.13 Total: 1.80 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.18 Total: -57.25 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.41 Total: -18.96 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.39 -9.43 -43.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889254332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.613 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds