Wall clock time and date at job start Tue Mar 31 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46794 * 299.99968 * 3 2 1 6 6 H 1.48491 * 109.47089 * 60.00137 * 3 2 1 7 7 C 1.40033 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.41345 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.40624 * 119.78493 * 179.97438 * 9 7 2 11 11 C 1.38304 * 119.13404 * 179.97438 * 10 9 7 12 12 C 1.38698 * 118.67315 * 359.72771 * 11 10 9 13 13 C 1.39669 * 119.48905 * 0.55898 * 12 11 10 14 14 N 1.39111 * 119.57615 * 179.70322 * 13 12 11 15 15 C 1.34774 * 120.00025 * 185.38479 * 14 13 12 16 16 O 1.21355 * 120.00075 * 354.86144 * 15 14 13 17 17 C 1.49370 * 119.99972 * 174.85591 * 15 14 13 18 18 O 1.21355 * 119.99952 * 0.02562 * 17 15 14 19 19 N 1.34778 * 119.99765 * 179.72999 * 17 15 14 20 20 C 1.47019 * 125.65003 * 359.96352 * 19 17 15 21 21 C 1.54313 * 107.27776 * 180.97383 * 20 19 17 22 22 C 1.55155 * 102.86404 * 22.52250 * 21 20 19 23 23 C 1.47429 * 125.64516 * 180.27663 * 19 17 15 24 24 N 1.31957 * 120.84370 * 359.42863 * 13 12 11 25 25 H 0.97000 * 119.99751 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.43209 * 359.97438 * 10 9 7 27 27 H 1.08005 * 120.66437 * 180.02562 * 11 10 9 28 28 H 1.07993 * 120.25639 * 180.25438 * 12 11 10 29 29 H 0.97002 * 119.99990 * 5.38738 * 14 13 12 30 30 H 1.08998 * 109.88498 * 300.51651 * 20 19 17 31 31 H 1.08991 * 109.88270 * 61.68275 * 20 19 17 32 32 H 1.09006 * 110.92169 * 264.11636 * 21 20 19 33 33 H 1.09001 * 110.59356 * 140.78597 * 21 20 19 34 34 H 1.08999 * 111.00721 * 206.23055 * 22 21 20 35 35 H 1.09009 * 111.00307 * 82.37768 * 22 21 20 36 36 H 1.08992 * 110.36559 * 274.66698 * 23 19 17 37 37 H 1.09004 * 110.36808 * 36.88587 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8828 2.3964 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3008 -2.4368 0.0005 10 6 2.0084 -3.6520 0.0005 11 6 1.3032 -4.8418 0.0011 12 6 -0.0829 -4.7938 0.0074 13 6 -0.7280 -3.5551 0.0011 14 7 -2.1182 -3.5049 0.0012 15 6 -2.7498 -2.3199 -0.1143 16 8 -2.1091 -1.2893 -0.1245 17 6 -4.2384 -2.2752 -0.2300 18 8 -4.8791 -3.3057 -0.2194 19 7 -4.8703 -1.0898 -0.3400 20 6 -4.2209 0.2290 -0.3587 21 6 -5.3373 1.2881 -0.4742 22 6 -6.5834 0.5364 0.0638 23 6 -6.3279 -0.9007 -0.4550 24 7 -0.0357 -2.4317 0.0006 25 1 -0.4850 0.8401 0.0004 26 1 3.0884 -3.6561 0.0001 27 1 1.8216 -5.7893 0.0015 28 1 -0.6589 -5.7073 0.0121 29 1 -2.6331 -4.3228 0.0844 30 1 -3.6593 0.3788 0.5634 31 1 -3.5536 0.3015 -1.2175 32 1 -5.4852 1.5861 -1.5122 33 1 -5.1104 2.1537 0.1482 34 1 -7.5002 0.9472 -0.3590 35 1 -6.6131 0.5589 1.1533 36 1 -6.6410 -0.9897 -1.4952 37 1 -6.8548 -1.6281 0.1627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889818783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:36 Heat of formation + Delta-G solvation = -21.148811 kcal Electronic energy + Delta-G solvation = -23065.897901 eV Core-core repulsion = 19615.595994 eV Total energy + Delta-G solvation = -3450.301907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81929 -40.44515 -39.04525 -38.46996 -36.06818 -34.92341 -32.64902 -32.27029 -31.07775 -30.03256 -27.69041 -26.52791 -24.24189 -23.35880 -22.42460 -21.95639 -20.67682 -19.64581 -18.52801 -18.15368 -17.62072 -17.48040 -16.45539 -16.31675 -16.27569 -15.73340 -15.44666 -15.03256 -14.70965 -14.53922 -14.26593 -14.04271 -13.81636 -13.76064 -13.34555 -12.89789 -12.74714 -12.63833 -12.55813 -12.32733 -12.16754 -12.04090 -11.74085 -11.64791 -11.56410 -10.92360 -10.55169 -9.94395 -9.86142 -9.19237 -8.92109 -8.08545 -6.42734 0.35668 1.01472 1.26036 1.31657 1.42885 1.53747 1.56449 2.27792 2.34339 2.50020 2.97860 3.33653 3.65954 3.73573 4.01055 4.05857 4.31056 4.32163 4.45977 4.64763 4.67559 4.80917 4.87644 4.92936 4.93687 4.97851 4.98909 5.09717 5.18080 5.27234 5.34738 5.63061 5.71200 5.89459 6.02496 6.12470 6.25863 6.46770 6.67041 6.81491 7.03688 7.28421 8.24602 8.55807 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.006297 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.698583 B = 4445.184312 C = 6334.315053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.015 3.985 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.460 4.460 8 H 0.087 0.913 9 C 0.237 3.763 10 C -0.322 4.322 11 C -0.033 4.033 12 C -0.344 4.344 13 C 0.347 3.653 14 N -0.635 5.635 15 C 0.458 3.542 16 O -0.408 6.408 17 C 0.523 3.477 18 O -0.552 6.552 19 N -0.589 5.589 20 C 0.104 3.896 21 C -0.124 4.124 22 C -0.120 4.120 23 C 0.094 3.906 24 N -0.505 5.505 25 H 0.274 0.726 26 H 0.108 0.892 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.423 0.577 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 3.915 -0.613 12.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.211 4.211 3 Si 0.797 3.203 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.105 0.895 9 C 0.112 3.888 10 C -0.345 4.345 11 C -0.057 4.057 12 C -0.369 4.369 13 C 0.109 3.891 14 N -0.284 5.284 15 C 0.235 3.765 16 O -0.272 6.272 17 C 0.306 3.694 18 O -0.432 6.432 19 N -0.323 5.323 20 C -0.018 4.018 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.026 4.026 24 N -0.225 5.225 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.157 0.843 28 H 0.146 0.854 29 H 0.261 0.739 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.614 5.081 -0.635 13.614 hybrid contribution 0.851 -0.910 0.042 1.246 sum -11.764 4.171 -0.593 12.496 Atomic orbital electron populations 1.70469 1.07325 1.28196 1.25127 1.26980 0.96047 1.03854 0.94227 0.85259 0.79510 0.77084 0.78479 1.18108 1.19420 1.19426 1.19942 0.94531 0.90330 1.44314 0.89508 1.18871 0.87644 0.93523 0.88802 1.21854 0.99404 0.93690 1.19508 1.21034 0.93173 0.97613 0.93841 1.20948 0.95387 0.95493 1.25094 1.18999 0.83914 0.91630 0.94543 1.42987 1.04321 1.10014 1.71124 1.20647 0.88629 0.85631 0.81547 1.91187 1.65646 1.31292 1.39086 1.19939 0.88034 0.83440 0.77963 1.90674 1.67945 1.33027 1.51539 1.48422 1.09611 1.05681 1.68602 1.22239 0.96309 0.81033 1.02217 1.22729 0.92984 0.96914 1.03570 1.22812 0.99301 0.91838 1.01775 1.22658 0.78061 0.99408 1.02499 1.68600 1.07605 1.24817 1.21436 0.91536 0.87339 0.84312 0.85405 0.73925 0.92080 0.92298 0.89085 0.88318 0.86351 0.90300 0.89821 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -37.57 8.99 21.84 0.20 -37.38 16 2 C 0.01 0.76 5.50 85.29 0.47 1.22 16 3 Si 0.98 38.85 29.56 68.60 2.03 40.88 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.46 -25.50 9.14 23.47 0.21 -25.28 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.49 16 9 C 0.24 13.48 6.55 40.21 0.26 13.74 16 10 C -0.32 -16.09 9.83 22.87 0.22 -15.87 16 11 C -0.03 -1.43 10.15 22.40 0.23 -1.20 16 12 C -0.34 -15.25 9.96 22.73 0.23 -15.02 16 13 C 0.35 17.37 7.42 133.29 0.99 18.36 16 14 N -0.63 -27.54 5.37 -309.72 -1.66 -29.20 16 15 C 0.46 20.11 7.81 87.24 0.68 20.79 16 16 O -0.41 -20.22 9.89 -3.26 -0.03 -20.25 16 17 C 0.52 19.53 7.91 87.24 0.69 20.23 16 18 O -0.55 -21.39 16.74 -3.26 -0.05 -21.45 16 19 N -0.59 -17.89 3.33 -813.49 -2.71 -20.60 16 20 C 0.10 2.96 5.48 86.73 0.48 3.44 16 21 C -0.12 -2.13 6.95 31.78 0.22 -1.91 16 22 C -0.12 -1.71 7.08 31.99 0.23 -1.48 16 23 C 0.09 2.00 6.91 86.86 0.60 2.60 16 24 N -0.50 -28.75 5.73 -186.43 -1.07 -29.82 16 25 H 0.27 13.64 8.29 -92.71 -0.77 12.87 16 26 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 27 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 28 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.42 15.62 8.18 -92.71 -0.76 14.86 16 30 H 0.06 2.00 7.59 -2.39 -0.02 1.99 16 31 H 0.06 1.94 7.69 -2.39 -0.02 1.92 16 32 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.70 8.03 -2.38 -0.02 1.68 16 Total: -1.00 -70.57 314.13 2.56 -68.01 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.35 Total: 30.19 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 5.51 Total: 19.62 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -5.24 Total: -116.99 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.09 Total: -41.70 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -70.57 2.56 -68.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889818783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.861 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds