Wall clock time and date at job start Tue Mar 31 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53941 * 113.73948 * 2 1 4 4 N 1.47924 * 85.99619 * 138.00757 * 3 2 1 5 5 C 1.34781 * 134.50553 * 155.35676 * 4 3 2 6 6 O 1.21357 * 120.00012 * 179.97438 * 5 4 3 7 7 C 1.49372 * 119.99669 * 0.02562 * 5 4 3 8 8 O 1.21357 * 120.00312 * 0.02562 * 7 5 4 9 9 N 1.34781 * 119.99669 * 179.97438 * 7 5 4 10 10 C 1.39116 * 119.99664 * 174.83249 * 9 7 5 11 11 C 1.39706 * 119.57765 * 185.70438 * 10 9 7 12 12 C 1.38645 * 119.49434 * 179.97438 * 11 10 9 13 13 C 1.38350 * 118.67057 * 0.02562 * 12 11 10 14 14 C 1.40589 * 119.13634 * 359.97438 * 13 12 11 15 15 C 1.41342 * 119.78506 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99689 * 5.69050 * 15 14 13 17 17 C 1.40031 * 119.99621 * 185.69109 * 15 14 13 18 18 N 1.30734 * 120.00200 * 354.92042 * 17 15 14 19 19 Si 1.86804 * 119.99381 * 174.91757 * 17 15 14 20 20 H 1.48499 * 109.46821 * 95.00167 * 19 17 15 21 21 H 1.48501 * 109.46871 * 214.99780 * 19 17 15 22 22 H 1.48500 * 109.47457 * 334.99952 * 19 17 15 23 23 N 1.31937 * 119.57983 * 5.43062 * 10 9 7 24 24 C 1.47582 * 91.00729 * 335.35773 * 4 3 2 25 25 H 1.08996 * 109.46959 * 321.25430 * 1 2 3 26 26 H 1.09002 * 109.47338 * 81.25685 * 1 2 3 27 27 H 1.09004 * 109.47080 * 201.25755 * 1 2 3 28 28 H 1.09004 * 112.94128 * 228.41640 * 2 1 3 29 29 H 1.09003 * 113.77213 * 252.36299 * 3 2 1 30 30 H 1.08999 * 113.77206 * 23.76148 * 3 2 1 31 31 H 0.96998 * 119.99719 * 354.82619 * 9 7 5 32 32 H 1.08006 * 120.25018 * 359.95442 * 11 10 9 33 33 H 1.08003 * 120.66504 * 180.02562 * 12 11 10 34 34 H 1.07997 * 120.42834 * 179.97438 * 13 12 11 35 35 H 0.97008 * 120.00122 * 180.02562 * 18 17 15 36 36 H 1.08992 * 113.76914 * 270.34225 * 24 4 3 37 37 H 1.08998 * 113.77044 * 138.93589 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1497 1.4092 0.0000 4 7 3.1121 0.8731 0.9872 5 6 4.3646 1.2023 1.3607 6 8 4.9271 0.5644 2.2265 7 6 5.0598 2.3530 0.7098 8 8 4.4968 2.9917 -0.1550 9 7 6.3121 2.6825 1.0836 10 6 6.9998 3.6836 0.4052 11 6 8.3372 3.9367 0.7201 12 6 9.0210 4.9344 0.0425 13 6 8.3518 5.6540 -0.9314 14 6 7.0058 5.3517 -1.2023 15 6 6.3091 6.0779 -2.1948 16 1 6.8338 6.7979 -2.8053 17 6 4.9386 5.8637 -2.3865 18 7 4.3241 4.9234 -1.7176 19 14 3.9885 6.9217 -3.5979 20 1 3.9193 6.2305 -4.9104 21 1 2.6136 7.1485 -3.0848 22 1 4.6774 8.2271 -3.7616 23 7 6.3822 4.3784 -0.5311 24 6 2.1498 -0.1673 1.3992 25 1 -0.3633 0.8015 0.6432 26 1 -0.3634 0.1562 -1.0157 27 1 -0.3633 -0.9578 0.3726 28 1 1.9549 -0.6662 -0.7508 29 1 2.6033 1.6897 -0.9507 30 1 1.4909 2.1789 0.4019 31 1 6.7338 2.2217 1.8257 32 1 8.8345 3.3596 1.4857 33 1 10.0553 5.1457 0.2704 34 1 8.8569 6.4378 -1.4764 35 1 3.3747 4.7748 -1.8507 36 1 1.4910 0.1403 2.2111 37 1 2.6034 -1.1445 1.5647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890331278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:08 Heat of formation + Delta-G solvation = 29.728648 kcal Electronic energy + Delta-G solvation = -22850.226578 eV Core-core repulsion = 19402.130883 eV Total energy + Delta-G solvation = -3448.095695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46906 -39.13587 -37.84216 -37.04944 -34.27096 -33.09251 -31.57565 -30.38302 -29.21010 -27.27278 -26.21567 -25.67575 -23.75002 -21.63108 -21.01781 -20.08276 -18.93988 -17.95339 -16.92973 -16.61867 -16.10088 -15.86304 -14.83447 -14.69404 -14.54015 -14.47188 -13.79682 -13.70299 -13.39191 -12.94924 -12.93696 -12.78236 -12.35698 -12.01938 -11.97595 -11.65972 -11.44097 -11.21484 -10.99991 -10.86128 -10.69518 -10.60166 -10.52028 -9.98652 -9.77217 -9.08639 -8.88861 -8.70686 -8.03256 -7.31921 -7.04812 -6.22991 -4.45205 1.95821 2.57361 2.82522 3.08967 3.12847 3.15483 3.23455 3.80422 3.99658 4.01239 4.20993 4.77826 4.84428 4.86363 4.98526 5.16445 5.33564 5.41126 5.57991 5.62941 5.70886 5.86397 5.96334 5.97254 6.06805 6.19040 6.43859 6.58419 6.76201 6.79617 7.16153 7.42700 7.52669 7.60515 7.76235 7.84161 8.04270 8.18205 8.37865 8.64682 8.94423 9.02849 10.14678 10.40943 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.006084 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.412193 B = 4601.255468 C = 6545.906708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.117 3.883 4 N -0.623 5.623 5 C 0.528 3.472 6 O -0.538 6.538 7 C 0.469 3.531 8 O -0.383 6.383 9 N -0.640 5.640 10 C 0.369 3.631 11 C -0.348 4.348 12 C -0.036 4.036 13 C -0.301 4.301 14 C 0.272 3.728 15 C -0.425 4.425 16 H 0.083 0.917 17 C 0.060 3.940 18 N -0.663 5.663 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.263 1.263 23 N -0.474 5.474 24 C 0.111 3.889 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.411 0.589 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.086 0.914 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -8.046 2.819 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.005 4.005 4 N -0.359 5.359 5 C 0.313 3.687 6 O -0.416 6.416 7 C 0.246 3.754 8 O -0.245 6.245 9 N -0.289 5.289 10 C 0.131 3.869 11 C -0.374 4.374 12 C -0.060 4.060 13 C -0.324 4.324 14 C 0.147 3.853 15 C -0.456 4.456 16 H 0.101 0.899 17 C -0.168 4.168 18 N -0.282 5.282 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.187 1.187 23 N -0.194 5.194 24 C -0.011 4.011 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.246 0.754 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.214 -8.153 2.491 12.553 hybrid contribution 0.778 0.382 0.245 0.901 sum -8.436 -7.771 2.736 11.792 Atomic orbital electron populations 1.21689 0.93583 1.02137 1.02545 1.23218 0.96277 0.98237 0.97362 1.23468 0.87998 0.95376 0.93684 1.49774 1.11992 1.33759 1.40365 1.20574 0.81054 0.84856 0.82170 1.90690 1.65408 1.53626 1.31865 1.20050 0.83607 0.85739 0.86025 1.91174 1.61945 1.46633 1.24772 1.43011 1.14466 1.36712 1.34707 1.18551 0.87670 0.88683 0.92004 1.20522 0.94967 1.09955 1.11947 1.20584 0.97178 0.93874 0.94391 1.21659 0.97721 1.06926 1.06075 1.18367 0.88134 0.88252 0.90567 1.19582 0.93291 1.18322 1.14390 0.89857 1.26153 0.98571 0.95491 0.96591 1.70321 1.09722 1.20264 1.27911 0.86483 0.79297 0.81176 0.80905 1.19708 1.20249 1.18666 1.68647 1.34297 1.08354 1.08065 1.23306 0.88420 0.92330 0.97061 0.92137 0.91855 0.92118 0.88043 0.88223 0.89368 0.75377 0.88726 0.88360 0.88372 0.91769 0.89601 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.71 37.16 0.36 -0.65 16 2 C -0.13 -1.25 4.54 -89.70 -0.41 -1.66 16 3 C 0.12 1.52 7.32 -2.78 -0.02 1.50 16 4 N -0.62 -9.52 3.62 -178.63 -0.65 -10.17 16 5 C 0.53 9.92 8.12 -11.62 -0.09 9.82 16 6 O -0.54 -10.73 17.21 5.49 0.09 -10.64 16 7 C 0.47 10.13 7.84 -11.62 -0.09 10.04 16 8 O -0.38 -9.22 10.91 5.49 0.06 -9.16 16 9 N -0.64 -13.83 5.37 -11.83 -0.06 -13.89 16 10 C 0.37 9.17 7.42 -155.09 -1.15 8.02 16 11 C -0.35 -7.96 9.96 -38.88 -0.39 -8.35 16 12 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 13 C -0.30 -7.49 9.83 -38.65 -0.38 -7.87 16 14 C 0.27 7.53 6.54 -85.00 -0.56 6.97 16 15 C -0.43 -11.43 9.13 -37.73 -0.34 -11.78 16 16 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 17 C 0.06 1.54 5.49 -17.35 -0.10 1.44 16 18 N -0.66 -17.48 9.07 55.55 0.50 -16.98 16 19 Si 0.90 18.58 29.56 -169.99 -5.03 13.55 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 N -0.47 -13.17 5.74 -10.28 -0.06 -13.23 16 24 C 0.11 1.22 8.40 -2.97 -0.02 1.19 16 25 H 0.06 0.42 7.98 -51.93 -0.41 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.50 7.42 -51.93 -0.39 1.11 16 30 H 0.09 1.07 7.99 -51.93 -0.41 0.65 16 31 H 0.41 7.68 8.18 -40.82 -0.33 7.35 16 32 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 35 H 0.27 6.55 8.29 -40.82 -0.34 6.22 16 36 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -32.13 319.82 -8.38 -40.52 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.47 Total: 7.71 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -3.59 Total: 7.47 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.26 Total: -54.27 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.15 Total: -19.80 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.13 -8.38 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890331278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.244 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds