Wall clock time and date at job start Tue Mar 31 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53941 * 113.73948 * 2 1 4 4 N 1.47924 * 85.99619 * 138.00757 * 3 2 1 5 5 C 1.34781 * 134.50553 * 155.35676 * 4 3 2 6 6 O 1.21357 * 120.00012 * 179.97438 * 5 4 3 7 7 C 1.49372 * 119.99669 * 0.02562 * 5 4 3 8 8 O 1.21357 * 120.00312 * 0.02562 * 7 5 4 9 9 N 1.34781 * 119.99669 * 179.97438 * 7 5 4 10 10 C 1.39116 * 119.99664 * 174.83249 * 9 7 5 11 11 C 1.39706 * 119.57765 * 185.70438 * 10 9 7 12 12 C 1.38645 * 119.49434 * 179.97438 * 11 10 9 13 13 C 1.38350 * 118.67057 * 0.02562 * 12 11 10 14 14 C 1.40589 * 119.13634 * 359.97438 * 13 12 11 15 15 C 1.41342 * 119.78506 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99689 * 5.69050 * 15 14 13 17 17 C 1.40031 * 119.99621 * 185.69109 * 15 14 13 18 18 N 1.30734 * 120.00200 * 354.92042 * 17 15 14 19 19 Si 1.86804 * 119.99381 * 174.91757 * 17 15 14 20 20 H 1.48499 * 109.46821 * 95.00167 * 19 17 15 21 21 H 1.48501 * 109.46871 * 214.99780 * 19 17 15 22 22 H 1.48500 * 109.47457 * 334.99952 * 19 17 15 23 23 N 1.31937 * 119.57983 * 5.43062 * 10 9 7 24 24 C 1.47582 * 91.00729 * 335.35773 * 4 3 2 25 25 H 1.08996 * 109.46959 * 321.25430 * 1 2 3 26 26 H 1.09002 * 109.47338 * 81.25685 * 1 2 3 27 27 H 1.09004 * 109.47080 * 201.25755 * 1 2 3 28 28 H 1.09004 * 112.94128 * 228.41640 * 2 1 3 29 29 H 1.09003 * 113.77213 * 252.36299 * 3 2 1 30 30 H 1.08999 * 113.77206 * 23.76148 * 3 2 1 31 31 H 0.96998 * 119.99719 * 354.82619 * 9 7 5 32 32 H 1.08006 * 120.25018 * 359.95442 * 11 10 9 33 33 H 1.08003 * 120.66504 * 180.02562 * 12 11 10 34 34 H 1.07997 * 120.42834 * 179.97438 * 13 12 11 35 35 H 0.97008 * 120.00122 * 180.02562 * 18 17 15 36 36 H 1.08992 * 113.76914 * 270.34225 * 24 4 3 37 37 H 1.08998 * 113.77044 * 138.93589 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1497 1.4092 0.0000 4 7 3.1121 0.8731 0.9872 5 6 4.3646 1.2023 1.3607 6 8 4.9271 0.5644 2.2265 7 6 5.0598 2.3530 0.7098 8 8 4.4968 2.9917 -0.1550 9 7 6.3121 2.6825 1.0836 10 6 6.9998 3.6836 0.4052 11 6 8.3372 3.9367 0.7201 12 6 9.0210 4.9344 0.0425 13 6 8.3518 5.6540 -0.9314 14 6 7.0058 5.3517 -1.2023 15 6 6.3091 6.0779 -2.1948 16 1 6.8338 6.7979 -2.8053 17 6 4.9386 5.8637 -2.3865 18 7 4.3241 4.9234 -1.7176 19 14 3.9885 6.9217 -3.5979 20 1 3.9193 6.2305 -4.9104 21 1 2.6136 7.1485 -3.0848 22 1 4.6774 8.2271 -3.7616 23 7 6.3822 4.3784 -0.5311 24 6 2.1498 -0.1673 1.3992 25 1 -0.3633 0.8015 0.6432 26 1 -0.3634 0.1562 -1.0157 27 1 -0.3633 -0.9578 0.3726 28 1 1.9549 -0.6662 -0.7508 29 1 2.6033 1.6897 -0.9507 30 1 1.4909 2.1789 0.4019 31 1 6.7338 2.2217 1.8257 32 1 8.8345 3.3596 1.4857 33 1 10.0553 5.1457 0.2704 34 1 8.8569 6.4378 -1.4764 35 1 3.3747 4.7748 -1.8507 36 1 1.4910 0.1403 2.2111 37 1 2.6034 -1.1445 1.5647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890331278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:07 Heat of formation + Delta-G solvation = 9.140366 kcal Electronic energy + Delta-G solvation = -22851.119353 eV Core-core repulsion = 19402.130883 eV Total energy + Delta-G solvation = -3448.988470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.85392 -40.67941 -39.40019 -38.66302 -36.08182 -34.93076 -32.58240 -32.28247 -31.08441 -28.38346 -27.52998 -27.22688 -25.30009 -23.44331 -22.64384 -21.24029 -20.43874 -19.59185 -18.55577 -18.20279 -17.59572 -17.16232 -16.47154 -16.31033 -16.10851 -15.98975 -15.50593 -15.10180 -14.80820 -14.59795 -14.13019 -13.82295 -13.77319 -13.72882 -13.25023 -12.89844 -12.75796 -12.73778 -12.58223 -12.35304 -12.19697 -12.09077 -11.76864 -11.59753 -11.49812 -10.92225 -10.50970 -9.95390 -9.90816 -9.19805 -8.93099 -8.09880 -6.43481 0.35841 1.01038 1.22148 1.27755 1.42532 1.52639 1.57045 2.27573 2.33349 2.41139 2.96814 3.26391 3.41183 3.93535 3.99673 4.04081 4.31415 4.39524 4.45227 4.56274 4.59130 4.66213 4.80086 4.80416 4.92816 4.96689 4.97477 5.05817 5.24962 5.26606 5.47695 5.62361 5.70260 5.88526 6.05566 6.23845 6.30698 6.44930 6.67063 6.82236 7.02657 7.28172 8.23659 8.55106 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.006084 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.412193 B = 4601.255468 C = 6545.906708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C 0.108 3.892 4 N -0.624 5.624 5 C 0.530 3.470 6 O -0.557 6.557 7 C 0.460 3.540 8 O -0.412 6.412 9 N -0.636 5.636 10 C 0.347 3.653 11 C -0.343 4.343 12 C -0.033 4.033 13 C -0.322 4.322 14 C 0.237 3.763 15 C -0.462 4.462 16 H 0.087 0.913 17 C 0.015 3.985 18 N -0.694 5.694 19 Si 0.976 3.024 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.259 1.259 23 N -0.505 5.505 24 C 0.110 3.890 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.423 0.577 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.274 0.726 36 H 0.109 0.891 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 -8.825 3.160 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.014 4.014 4 N -0.359 5.359 5 C 0.314 3.686 6 O -0.437 6.437 7 C 0.237 3.763 8 O -0.276 6.276 9 N -0.286 5.286 10 C 0.109 3.891 11 C -0.369 4.369 12 C -0.057 4.057 13 C -0.345 4.345 14 C 0.112 3.888 15 C -0.493 4.493 16 H 0.105 0.895 17 C -0.211 4.211 18 N -0.313 5.313 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.182 1.182 23 N -0.225 5.225 24 C -0.010 4.010 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.260 0.740 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.282 -8.968 2.851 13.939 hybrid contribution 1.148 0.555 0.203 1.291 sum -9.134 -8.413 3.054 12.788 Atomic orbital electron populations 1.21674 0.91039 1.03424 1.03202 1.23099 0.98029 0.95184 0.96427 1.23671 0.87641 0.98041 0.92066 1.50075 1.11299 1.34408 1.40107 1.19940 0.82390 0.84140 0.82173 1.90669 1.66262 1.54056 1.32665 1.20712 0.83516 0.86323 0.85708 1.91168 1.62591 1.47832 1.26003 1.43023 1.14679 1.36093 1.34766 1.19012 0.88914 0.89172 0.92017 1.20955 0.94261 1.09704 1.11968 1.21040 0.98925 0.92740 0.92964 1.21865 0.97207 1.08041 1.07356 1.18867 0.89654 0.88899 0.91394 1.19920 0.94612 1.19363 1.15373 0.89456 1.26994 0.98994 0.96708 0.98391 1.70468 1.10028 1.21588 1.29262 0.85288 0.77673 0.79121 0.78183 1.19101 1.19466 1.18231 1.68603 1.35539 1.09117 1.09248 1.23683 0.87279 0.91448 0.98608 0.91703 0.91344 0.90176 0.87745 0.90915 0.88394 0.73955 0.85398 0.84253 0.87275 0.91531 0.87279 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.71 71.98 0.70 -0.81 16 2 C -0.11 -1.84 4.54 -10.14 -0.05 -1.88 16 3 C 0.11 2.76 7.32 86.42 0.63 3.40 16 4 N -0.62 -18.74 3.62 -837.41 -3.03 -21.77 16 5 C 0.53 20.01 8.12 87.24 0.71 20.72 16 6 O -0.56 -22.06 17.21 -3.27 -0.06 -22.11 16 7 C 0.46 20.43 7.84 87.24 0.68 21.12 16 8 O -0.41 -20.68 10.91 -3.27 -0.04 -20.72 16 9 N -0.64 -27.91 5.37 -309.69 -1.66 -29.57 16 10 C 0.35 17.49 7.42 133.30 0.99 18.48 16 11 C -0.34 -15.33 9.96 22.72 0.23 -15.11 16 12 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 13 C -0.32 -16.16 9.83 22.87 0.22 -15.94 16 14 C 0.24 13.55 6.54 40.20 0.26 13.82 16 15 C -0.46 -25.68 9.13 23.47 0.21 -25.47 16 16 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 17 C 0.01 0.77 5.49 85.29 0.47 1.23 16 18 N -0.69 -37.94 9.07 21.84 0.20 -37.74 16 19 Si 0.98 38.91 29.56 68.60 2.03 40.93 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 N -0.51 -28.97 5.74 -186.43 -1.07 -30.04 16 24 C 0.11 2.16 8.40 86.49 0.73 2.88 16 25 H 0.06 0.70 7.98 -2.39 -0.02 0.68 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 2.29 7.42 -2.39 -0.02 2.27 16 30 H 0.10 2.32 7.99 -2.39 -0.02 2.30 16 31 H 0.42 15.84 8.18 -92.71 -0.76 15.08 16 32 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 35 H 0.27 13.75 8.29 -92.70 -0.77 12.98 16 36 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.08 319.82 2.74 -69.34 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.35 Total: 30.44 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 6.02 Total: 21.24 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.56 Total: -119.12 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.09 Total: -42.83 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.93 kcal Total: -72.08 2.74 -69.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890331278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.483 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds