Wall clock time and date at job start Tue Mar 31 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46771 * 124.34608 * 2 1 4 4 C 1.54483 * 105.47111 * 197.03415 * 3 2 1 5 5 H 1.08999 * 111.00527 * 216.44854 * 4 3 2 6 6 C 1.50707 * 110.96426 * 92.70300 * 4 3 2 7 7 O 1.21267 * 120.00109 * 6.16748 * 6 4 3 8 8 N 1.34785 * 119.99440 * 186.16612 * 6 4 3 9 9 C 1.37204 * 120.00484 * 0.02562 * 8 6 4 10 10 H 1.08000 * 119.99674 * 315.73277 * 9 8 6 11 11 C 1.38884 * 120.00153 * 135.73244 * 9 8 6 12 12 N 1.31413 * 119.99947 * 345.58585 * 11 9 8 13 13 Si 1.86801 * 120.00082 * 165.58701 * 11 9 8 14 14 H 1.48506 * 109.46986 * 269.99830 * 13 11 9 15 15 H 1.48495 * 109.47226 * 29.99961 * 13 11 9 16 16 H 1.48501 * 109.47338 * 150.00133 * 13 11 9 17 17 C 1.39433 * 119.99356 * 180.02562 * 8 6 4 18 18 C 1.39066 * 119.69306 * 166.84199 * 17 8 6 19 19 C 1.38382 * 119.09444 * 179.74888 * 18 17 8 20 20 C 1.38827 * 118.49549 * 0.51110 * 19 18 17 21 21 C 1.38147 * 119.30905 * 359.75212 * 20 19 18 22 22 N 1.31884 * 120.85459 * 359.97438 * 21 20 19 23 23 C 1.54632 * 101.76620 * 334.58773 * 4 3 2 24 24 C 1.34423 * 124.35396 * 180.02562 * 2 1 3 25 25 O 1.21283 * 124.93818 * 359.60780 * 24 2 1 26 26 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47028 * 299.99950 * 1 2 3 28 28 H 1.09000 * 109.47344 * 60.00062 * 1 2 3 29 29 H 1.09001 * 110.24387 * 78.04194 * 3 2 1 30 30 H 1.08997 * 110.24885 * 316.03354 * 3 2 1 31 31 H 0.97006 * 120.00014 * 176.80308 * 12 11 9 32 32 H 1.07998 * 120.44965 * 0.02562 * 18 17 8 33 33 H 1.08003 * 120.75173 * 180.24032 * 19 18 17 34 34 H 1.07991 * 120.34698 * 179.73083 * 20 19 18 35 35 H 1.07997 * 119.57601 * 180.02562 * 21 20 19 36 36 H 1.08995 * 110.48566 * 143.47416 * 23 4 3 37 37 H 1.08995 * 110.48523 * 265.98374 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7009 0.7489 -0.4361 5 1 4.4758 1.3010 0.0955 6 6 3.8744 0.8820 -1.9273 7 8 3.0101 1.4110 -2.5935 8 7 4.9902 0.4131 -2.5203 9 6 5.9679 -0.1858 -1.7667 10 1 6.2767 0.2579 -0.8317 11 6 6.5602 -1.3626 -2.2060 12 7 6.0076 -2.0534 -3.1778 13 14 8.1425 -1.9635 -1.4157 14 1 9.3060 -1.3978 -2.1449 15 1 8.1856 -1.5241 0.0021 16 1 8.1940 -3.4464 -1.4761 17 6 5.1510 0.5368 -3.8998 18 6 6.3982 0.3091 -4.4712 19 6 6.5426 0.4302 -5.8421 20 6 5.4327 0.7866 -6.5960 21 6 4.2250 1.0032 -5.9611 22 7 4.1161 0.8750 -4.6530 23 6 3.6898 -0.7378 -0.0109 24 6 2.2235 -1.1098 -0.0005 25 8 1.7947 -2.2442 0.0058 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.3309 1.6428 1.0005 30 1 1.8982 1.9385 -0.7099 31 1 6.4452 -2.8503 -3.5162 32 1 7.2416 0.0372 -3.8538 33 1 7.4981 0.2556 -6.3143 34 1 5.5126 0.8937 -7.6676 35 1 3.3588 1.2802 -6.5435 36 1 4.2324 -1.3456 -0.7348 37 1 4.1218 -0.8534 0.9831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892463733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:57 Heat of formation + Delta-G solvation = -3.139981 kcal Electronic energy + Delta-G solvation = -23765.902211 eV Core-core repulsion = 20316.381225 eV Total energy + Delta-G solvation = -3449.520985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43709 -39.38145 -37.79886 -35.74508 -35.10635 -32.43975 -32.16282 -31.07559 -29.23658 -27.16718 -26.41195 -25.39604 -23.43954 -22.32688 -21.39008 -19.30387 -19.06028 -18.02791 -16.87980 -16.20959 -15.64579 -15.37615 -15.12335 -14.96273 -14.72023 -14.24430 -13.95929 -13.66332 -13.15880 -13.06157 -12.98634 -12.69482 -12.21499 -12.04758 -11.96785 -11.88857 -11.57316 -11.43890 -11.28806 -11.04257 -10.85987 -10.78603 -10.49308 -9.53914 -9.30014 -9.01833 -8.93081 -8.74772 -8.34332 -8.01152 -7.14358 -6.51016 -4.50545 2.17757 2.38644 2.98718 3.07809 3.08808 3.11918 3.45140 3.65620 3.86539 4.22440 4.64504 4.85481 4.94920 5.18506 5.27929 5.46549 5.51964 5.63215 5.66408 5.67553 5.86387 5.92665 5.97717 6.01293 6.06997 6.25776 6.28889 6.43307 6.74499 6.76798 6.89488 7.01553 7.15112 7.19151 7.47640 7.50808 7.84155 8.12632 8.64197 8.75691 8.85159 9.24569 9.69159 10.38814 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.007718 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.900477 B = 3626.811265 C = 4936.055995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.622 5.622 3 C 0.115 3.885 4 C -0.102 4.102 5 H 0.115 0.885 6 C 0.495 3.505 7 O -0.520 6.520 8 N -0.382 5.382 9 C -0.367 4.367 10 H 0.102 0.898 11 C 0.053 3.947 12 N -0.833 5.833 13 Si 0.914 3.086 14 H -0.272 1.272 15 H -0.263 1.263 16 H -0.280 1.280 17 C 0.392 3.608 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.236 4.236 21 C 0.110 3.890 22 N -0.493 5.493 23 C -0.141 4.141 24 C 0.519 3.481 25 O -0.543 6.543 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.277 0.723 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 5.570 3.571 6.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.357 5.357 3 C -0.008 4.008 4 C -0.124 4.124 5 H 0.133 0.867 6 C 0.283 3.717 7 O -0.396 6.396 8 N -0.094 5.094 9 C -0.494 4.494 10 H 0.120 0.880 11 C -0.159 4.159 12 N -0.464 5.464 13 Si 0.739 3.261 14 H -0.198 1.198 15 H -0.187 1.187 16 H -0.205 1.205 17 C 0.162 3.838 18 C -0.175 4.175 19 C -0.102 4.102 20 C -0.258 4.258 21 C -0.049 4.049 22 N -0.208 5.208 23 C -0.181 4.181 24 C 0.308 3.692 25 O -0.421 6.421 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.723 5.171 3.678 6.575 hybrid contribution 1.737 -0.680 -0.245 1.881 sum 0.014 4.492 3.433 5.653 Atomic orbital electron populations 1.21460 0.78838 1.03185 1.01039 1.48103 1.06199 1.07592 1.73800 1.22025 0.89828 0.87786 1.01185 1.21972 0.97371 0.97816 0.95194 0.86731 1.20419 0.81485 0.80515 0.89240 1.90656 1.40296 1.43538 1.65086 1.41102 1.16381 1.49276 1.02619 1.19368 1.17917 1.05461 1.06684 0.88033 1.25511 0.99142 0.94614 0.96597 1.70009 1.36094 1.15044 1.25212 0.86121 0.81465 0.78401 0.80121 1.19779 1.18728 1.20509 1.18632 0.88528 0.90826 0.85854 1.21442 0.98100 1.03374 0.94627 1.21144 0.98024 0.97386 0.93695 1.21642 0.95074 1.09230 0.99841 1.22267 0.96172 0.96396 0.90115 1.67549 1.31222 1.16236 1.05807 1.22406 0.93796 0.96611 1.05322 1.21183 0.89794 0.84142 0.74114 1.90656 1.78948 1.21308 1.51165 0.90398 0.92596 0.92193 0.91105 0.88882 0.91230 0.84979 0.86620 0.86829 0.84487 0.84598 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.38 11.14 59.84 0.67 2.05 16 2 N -0.62 -10.78 3.33 -180.28 -0.60 -11.38 16 3 C 0.12 1.77 6.73 -3.12 -0.02 1.75 16 4 C -0.10 -1.79 2.72 -90.13 -0.25 -2.04 16 5 H 0.11 1.67 7.89 -51.93 -0.41 1.26 16 6 C 0.50 11.30 7.02 -10.98 -0.08 11.22 16 7 O -0.52 -13.09 13.85 5.57 0.08 -13.02 16 8 N -0.38 -9.20 2.71 -60.71 -0.16 -9.37 16 9 C -0.37 -8.26 5.74 -14.91 -0.09 -8.35 16 10 H 0.10 2.07 7.38 -52.49 -0.39 1.68 16 11 C 0.05 1.20 3.30 -17.49 -0.06 1.14 16 12 N -0.83 -20.97 11.47 55.49 0.64 -20.33 16 13 Si 0.91 17.59 29.58 -169.99 -5.03 12.57 16 14 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 15 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 16 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 17 C 0.39 9.75 6.38 -154.63 -0.99 8.77 16 18 C -0.15 -3.43 7.68 -39.22 -0.30 -3.73 16 19 C -0.08 -1.50 10.17 -39.31 -0.40 -1.90 16 20 C -0.24 -4.42 10.11 -39.40 -0.40 -4.81 16 21 C 0.11 2.30 11.18 -17.56 -0.20 2.10 16 22 N -0.49 -12.31 8.00 -12.34 -0.10 -12.41 16 23 C -0.14 -2.63 5.80 -26.74 -0.16 -2.79 16 24 C 0.52 10.57 8.02 -10.86 -0.09 10.48 16 25 O -0.54 -12.88 17.35 5.55 0.10 -12.78 16 26 H 0.08 1.17 7.53 -51.93 -0.39 0.78 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.52 6.94 -51.93 -0.36 1.16 16 31 H 0.28 6.67 8.31 -40.82 -0.34 6.34 16 32 H 0.13 2.99 5.91 -52.49 -0.31 2.68 16 33 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.14 2.44 8.06 -52.49 -0.42 2.01 16 36 H 0.14 3.05 6.05 -51.93 -0.31 2.73 16 37 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -31.97 310.36 -7.02 -38.99 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.27 Total: 9.16 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: -2.34 Total: 13.89 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.23 Total: -53.49 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.17 Total: -25.80 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.97 -7.02 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892463733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.850 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds