Wall clock time and date at job start Tue Mar 31 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00306 * 2 1 4 4 H 1.48493 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47191 * 300.00393 * 3 2 1 6 6 H 1.48506 * 109.47130 * 60.00096 * 3 2 1 7 7 C 1.37882 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99849 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00108 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47456 * 180.02562 * 9 7 2 11 11 C 1.37212 * 120.00676 * 179.97438 * 10 9 7 12 12 N 1.30944 * 118.44480 * 359.97438 * 11 10 9 13 13 C 1.35390 * 121.51505 * 180.02562 * 12 11 10 14 14 C 1.39771 * 121.64804 * 180.02562 * 13 12 11 15 15 C 1.36649 * 119.65747 * 179.97438 * 14 13 12 16 16 C 1.38901 * 120.96513 * 359.97438 * 15 14 13 17 17 C 1.36763 * 120.73330 * 0.02562 * 16 15 14 18 18 C 1.39404 * 119.50677 * 0.02562 * 17 16 15 19 19 C 1.46920 * 121.92183 * 180.27404 * 18 17 16 20 20 O 1.21728 * 121.22723 * 359.97438 * 19 18 17 21 21 N 1.35323 * 117.53892 * 180.21970 * 19 18 17 22 22 C 1.46503 * 119.72207 * 179.77043 * 21 19 18 23 23 C 1.53002 * 109.47189 * 269.73290 * 22 21 19 24 24 O 1.42905 * 109.47079 * 64.99736 * 23 22 21 25 25 H 0.97003 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47264 * 59.99984 * 9 7 2 27 27 H 1.09007 * 109.46919 * 300.00143 * 9 7 2 28 28 H 0.97004 * 119.99319 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.17428 * 359.95090 * 14 13 12 30 30 H 1.07995 * 119.51552 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.62945 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.23920 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47122 * 149.73385 * 22 21 19 34 34 H 1.09005 * 109.47144 * 29.73008 * 22 21 19 35 35 H 1.09004 * 109.46930 * 304.99963 * 23 22 21 36 36 H 1.09000 * 109.47312 * 184.99906 * 23 22 21 37 37 H 0.96705 * 113.99788 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7456 -4.9064 0.0000 12 7 0.4522 -5.1107 0.0010 13 6 -0.0668 -6.3612 0.0021 14 6 -1.4468 -6.5825 0.0027 15 6 -1.9265 -7.8621 0.0032 16 6 -1.0620 -8.9493 0.0027 17 6 0.2931 -8.7648 0.0022 18 6 0.8097 -7.4700 0.0027 19 6 2.2558 -7.2106 -0.0038 20 8 3.0607 -8.1238 -0.0095 21 7 2.6599 -5.9191 0.0018 22 6 4.0910 -5.6058 0.0008 23 6 4.5903 -5.4972 1.4430 24 8 4.4826 -6.7711 2.0815 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 3.1566 -3.4354 -0.0009 29 1 -2.1307 -5.7465 0.0030 30 1 -2.9932 -8.0304 0.0041 31 1 -1.4646 -9.9515 0.0028 32 1 0.9579 -9.6160 0.0014 33 1 4.2551 -4.6585 -0.5128 34 1 4.6359 -6.3973 -0.5137 35 1 3.9861 -4.7680 1.9827 36 1 5.6323 -5.1774 1.4436 37 1 4.7820 -6.7767 3.0010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893549290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:37 Heat of formation + Delta-G solvation = -22.171519 kcal Electronic energy + Delta-G solvation = -22833.741109 eV Core-core repulsion = 19383.394854 eV Total energy + Delta-G solvation = -3450.346255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29467 -38.45680 -37.70120 -36.76604 -34.67912 -33.98740 -32.56705 -31.08806 -29.49904 -28.90316 -27.19532 -24.48646 -23.68502 -22.23016 -22.19803 -21.19422 -19.10834 -18.20287 -17.55503 -17.24331 -16.47900 -16.01251 -15.52069 -15.25252 -14.92076 -14.54184 -14.23158 -13.94372 -13.70461 -13.61025 -13.47762 -13.27813 -12.76274 -12.50460 -12.14014 -11.87348 -11.60543 -11.38130 -11.33330 -11.04778 -10.98311 -10.41096 -10.20265 -9.84940 -9.73817 -9.54797 -9.16146 -9.03129 -8.80392 -8.40539 -7.05693 -6.29276 -4.37431 1.10121 1.34994 2.51312 2.75917 3.15408 3.23161 3.23737 3.25129 3.72460 4.06124 4.23105 4.45035 4.61862 4.83405 4.91021 5.01179 5.07711 5.10183 5.18912 5.22147 5.31532 5.56272 5.66354 5.75177 5.77804 6.13675 6.34604 6.43736 6.61856 6.74340 6.92335 7.07393 7.09073 7.38431 7.41133 7.53895 7.62881 7.81191 8.03991 8.19674 8.59930 8.84109 9.28926 10.80345 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.005038 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.197336 B = 5555.939661 C = 7057.917854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.265 3.735 10 N -0.681 5.681 11 C 0.632 3.368 12 N -0.589 5.589 13 C 0.225 3.775 14 C -0.140 4.140 15 C -0.064 4.064 16 C -0.182 4.182 17 C -0.026 4.026 18 C -0.248 4.248 19 C 0.571 3.429 20 O -0.511 6.511 21 N -0.558 5.558 22 C 0.090 3.910 23 C 0.058 3.942 24 O -0.556 6.556 25 H 0.267 0.733 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.399 0.601 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -11.515 1.638 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.590 4.590 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.314 5.314 11 C 0.277 3.723 12 N -0.325 5.325 13 C 0.109 3.891 14 C -0.160 4.160 15 C -0.084 4.084 16 C -0.202 4.202 17 C -0.045 4.045 18 C -0.256 4.256 19 C 0.364 3.636 20 O -0.385 6.385 21 N -0.287 5.287 22 C -0.033 4.033 23 C -0.021 4.021 24 O -0.361 6.361 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.237 0.763 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.381 -11.376 1.039 11.913 hybrid contribution 1.570 0.726 0.566 1.820 sum 4.952 -10.649 1.605 11.853 Atomic orbital electron populations 1.69972 1.06042 1.27417 1.48211 1.24893 0.94911 0.99349 0.94468 0.86361 0.79757 0.82899 0.77885 1.19686 1.20691 1.20720 1.21203 0.93250 0.90324 1.54179 0.91958 1.19278 0.87460 0.79970 0.98824 1.45487 1.11081 1.01535 1.73305 1.19368 0.84603 0.82544 0.85832 1.68709 1.05805 1.21082 1.36879 1.18683 0.93903 0.86716 0.89817 1.20512 0.92889 0.97402 1.05246 1.20886 0.99680 0.92229 0.95602 1.20638 0.92989 0.98818 1.07741 1.20583 0.95328 0.95097 0.93502 1.20414 0.91683 0.95886 1.17593 1.18142 0.88989 0.80760 0.75661 1.90799 1.56025 1.42459 1.49227 1.46427 1.07756 1.07168 1.67366 1.21903 0.80322 1.03863 0.97251 1.22558 0.99967 0.86360 0.93227 1.86674 1.88891 1.30673 1.29835 0.92314 0.94510 0.94537 0.76341 0.84799 0.85866 0.86151 0.85622 0.87921 0.87516 0.92770 0.91824 0.77748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.28 13.29 55.43 0.74 -23.54 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.55 -13.72 9.28 -34.44 -0.32 -14.04 16 8 H 0.06 1.45 7.60 -52.49 -0.40 1.05 16 9 C 0.26 6.30 5.32 -5.20 -0.03 6.28 16 10 N -0.68 -13.00 5.48 -63.19 -0.35 -13.34 16 11 C 0.63 12.07 8.20 -321.20 -2.63 9.44 16 12 N -0.59 -12.19 9.43 -11.59 -0.11 -12.30 16 13 C 0.23 4.25 6.63 -84.54 -0.56 3.69 16 14 C -0.14 -2.27 10.00 -39.58 -0.40 -2.66 16 15 C -0.06 -0.86 9.95 -39.91 -0.40 -1.25 16 16 C -0.18 -2.41 9.97 -39.87 -0.40 -2.80 16 17 C -0.03 -0.40 9.63 -39.68 -0.38 -0.78 16 18 C -0.25 -4.50 5.89 -104.77 -0.62 -5.12 16 19 C 0.57 10.70 7.26 -12.50 -0.09 10.61 16 20 O -0.51 -10.20 15.59 -0.33 -0.01 -10.20 16 21 N -0.56 -9.57 2.60 -118.38 -0.31 -9.87 16 22 C 0.09 1.20 5.32 -4.04 -0.02 1.18 16 23 C 0.06 0.69 7.39 37.16 0.27 0.96 16 24 O -0.56 -7.53 12.51 -40.73 -0.51 -8.04 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.40 6.49 5.93 -40.82 -0.24 6.25 16 29 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.83 7.83 -52.48 -0.41 1.42 16 33 H 0.10 1.14 6.26 -51.93 -0.32 0.82 16 34 H 0.11 1.44 7.45 -51.93 -0.39 1.06 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.38 3.29 9.12 45.56 0.42 3.71 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -31.95 319.30 -9.86 -41.81 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -3.44 Total: 8.89 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -5.67 Total: 7.16 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.03 Total: -59.06 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.51 Total: -18.24 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.95 -9.86 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893549290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.635 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds