Wall clock time and date at job start Tue Mar 31 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99791 * 2 1 4 4 H 1.48506 * 109.47393 * 269.99614 * 3 2 1 5 5 H 1.48500 * 109.47330 * 29.99883 * 3 2 1 6 6 H 1.48504 * 109.47125 * 150.00086 * 3 2 1 7 7 C 1.37882 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00130 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99928 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47374 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97833 * 124.99520 * 10 9 7 12 12 C 1.35238 * 107.86437 * 179.73940 * 11 10 9 13 13 C 1.40413 * 107.86618 * 359.97438 * 12 11 10 14 14 N 1.40158 * 125.97506 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99626 * 0.02562 * 14 13 12 16 16 O 1.21299 * 120.00430 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99936 * 179.97438 * 15 14 13 18 18 H 1.09003 * 115.52553 * 86.57172 * 17 15 14 19 19 C 1.53038 * 117.45972 * 301.08276 * 17 15 14 20 20 H 1.09007 * 119.43458 * 139.62509 * 19 17 15 21 21 C 1.54427 * 117.96272 * 345.43509 * 19 17 15 22 22 C 1.54910 * 103.66069 * 319.33451 * 21 19 17 23 23 C 1.52476 * 102.93930 * 322.17593 * 22 21 19 24 24 O 1.20759 * 127.57506 * 218.36951 * 23 22 21 25 25 C 1.51809 * 104.82479 * 38.30718 * 23 22 21 26 26 H 1.09000 * 117.78001 * 195.87941 * 25 23 22 27 27 N 1.31225 * 108.05393 * 0.02562 * 13 12 11 28 28 H 0.97002 * 120.00575 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47211 * 59.99490 * 9 7 2 30 30 H 1.08998 * 109.46862 * 300.00025 * 9 7 2 31 31 H 1.07999 * 126.06584 * 359.73944 * 11 10 9 32 32 H 1.07989 * 126.06650 * 180.02562 * 12 11 10 33 33 H 0.96993 * 120.00374 * 179.97438 * 14 13 12 34 34 H 1.08999 * 110.58528 * 77.87811 * 21 19 17 35 35 H 1.09002 * 110.58492 * 200.78560 * 21 19 17 36 36 H 1.08999 * 110.71700 * 80.54031 * 22 21 19 37 37 H 1.09001 * 110.71899 * 203.63686 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0022 11 6 4.8552 -3.1145 -0.8918 12 6 5.0608 -4.4048 -0.5431 13 6 4.3025 -4.6656 0.6095 14 7 4.2361 -5.8879 1.2923 15 6 4.9433 -6.9463 0.8496 16 8 5.6370 -6.8412 -0.1399 17 6 4.8724 -8.2603 1.5840 18 1 4.0544 -8.9185 1.2910 19 6 5.2939 -8.2702 3.0551 20 1 4.7208 -8.8575 3.7726 21 6 6.0750 -7.0514 3.5928 22 6 7.0558 -6.7094 2.4435 23 6 7.4627 -8.0832 1.9218 24 8 8.5542 -8.4327 1.5413 25 6 6.1945 -8.9150 1.9877 26 1 6.2931 -9.9982 1.9162 27 7 3.6659 -3.5653 0.9351 28 1 -0.4851 0.8400 -0.0004 29 1 3.8746 -0.6799 0.8911 30 1 3.8752 -0.6804 -0.8888 31 1 5.2970 -2.6058 -1.7359 32 1 5.6962 -5.1094 -1.0590 33 1 3.6817 -5.9718 2.0838 34 1 5.4001 -6.2166 3.7818 35 1 6.6221 -7.3156 4.4977 36 1 6.5529 -6.1349 1.6656 37 1 7.9211 -6.1664 2.8236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906731611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:11 Heat of formation + Delta-G solvation = 33.715660 kcal Electronic energy + Delta-G solvation = -22456.999188 eV Core-core repulsion = 19009.076383 eV Total energy + Delta-G solvation = -3447.922805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.77039 -41.85114 -40.00749 -38.30711 -36.27632 -35.18620 -33.12577 -32.36588 -31.00815 -29.15840 -27.56333 -26.52851 -24.41740 -22.92334 -22.13403 -21.38243 -20.67796 -20.16892 -19.10486 -18.45815 -18.13654 -17.33419 -17.14264 -16.95523 -16.31783 -15.93036 -15.71066 -15.45086 -14.96725 -14.89045 -14.65618 -14.34609 -14.29283 -13.88083 -13.84308 -13.37463 -13.00729 -12.64805 -12.52867 -12.41947 -12.29292 -11.83387 -11.68642 -11.57002 -11.47328 -11.32108 -10.99617 -10.86578 -10.45585 -9.78946 -9.13761 -8.37092 -6.47298 0.60733 0.88715 1.26964 1.36831 1.39740 1.42296 1.50175 2.17315 2.26238 2.29306 2.48764 2.94710 2.95781 3.19178 3.39768 3.53920 3.78532 3.94904 3.96758 4.09664 4.19812 4.27845 4.52129 4.60816 4.73578 4.76667 4.85442 4.86147 4.88009 4.92382 5.04726 5.08370 5.12954 5.24877 5.86352 5.99210 6.19267 6.33824 6.39263 6.58493 6.92514 7.06621 7.15787 8.79838 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.003444 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.241699 B = 8128.844714 C = 8296.949511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.954 3.046 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.547 4.547 8 H 0.028 0.972 9 C 0.239 3.761 10 N -0.342 5.342 11 C 0.059 3.941 12 C -0.297 4.297 13 C 0.266 3.734 14 N -0.616 5.616 15 C 0.547 3.453 16 O -0.552 6.552 17 C -0.127 4.127 18 H 0.191 0.809 19 C -0.088 4.088 20 H 0.186 0.814 21 C -0.098 4.098 22 C -0.216 4.216 23 C 0.393 3.607 24 O -0.478 6.478 25 C -0.215 4.215 26 H 0.159 0.841 27 N -0.340 5.340 28 H 0.272 0.728 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.207 0.793 32 H 0.164 0.836 33 H 0.427 0.573 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 -15.164 8.012 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.585 4.585 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.089 4.089 12 C -0.328 4.328 13 C 0.011 3.989 14 N -0.266 5.266 15 C 0.336 3.664 16 O -0.429 6.429 17 C -0.148 4.148 18 H 0.208 0.792 19 C -0.106 4.106 20 H 0.203 0.797 21 C -0.135 4.135 22 C -0.254 4.254 23 C 0.270 3.730 24 O -0.352 6.352 25 C -0.234 4.234 26 H 0.177 0.823 27 N -0.170 5.170 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.224 0.776 32 H 0.181 0.819 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.392 -14.521 7.951 20.097 hybrid contribution 0.048 0.492 -0.639 0.807 sum 11.440 -14.030 7.312 19.524 Atomic orbital electron populations 1.70041 1.08532 1.28798 1.50631 1.25888 0.95733 1.03437 0.93241 0.85641 0.79546 0.77375 0.79971 1.17960 1.20626 1.16231 1.21221 0.90430 0.93770 1.53038 0.95358 1.19887 0.94215 0.74356 0.99611 1.48505 1.33929 1.10227 1.19766 1.23216 0.94313 0.94749 0.96604 1.21729 1.11993 0.97214 1.01910 1.19456 0.97445 0.87470 0.94508 1.42669 1.47619 1.06003 1.30304 1.20428 0.77399 0.84749 0.83872 1.90711 1.40834 1.83871 1.27464 1.22419 0.99492 0.94057 0.98830 0.79161 1.23690 0.98123 0.98944 0.89816 0.79659 1.22178 0.96520 0.97801 0.96981 1.23539 1.03099 0.97063 1.01660 1.24802 0.87672 0.90544 0.69942 1.90378 1.27913 1.78774 1.38185 1.23726 0.89394 1.02095 1.08215 0.82330 1.77322 1.25506 0.96864 1.17322 0.91877 0.93543 0.90288 0.77629 0.81911 0.73395 0.88774 0.86767 0.88507 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 2 C 0.02 0.89 5.47 84.66 0.46 1.35 16 3 Si 0.95 39.96 27.47 68.60 1.88 41.85 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.24 -9.00 6.54 99.48 0.65 -8.35 16 7 C -0.55 -30.88 9.80 25.60 0.25 -30.63 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 9 C 0.24 10.79 5.33 85.63 0.46 11.25 16 10 N -0.34 -14.84 3.66 -351.85 -1.29 -16.13 16 11 C 0.06 2.14 11.44 83.52 0.96 3.10 16 12 C -0.30 -10.94 9.61 22.11 0.21 -10.73 16 13 C 0.27 9.81 8.11 133.32 1.08 10.89 16 14 N -0.62 -16.18 4.97 -307.50 -1.53 -17.71 16 15 C 0.55 13.26 4.04 87.66 0.35 13.62 16 16 O -0.55 -18.08 12.98 -3.09 -0.04 -18.12 16 17 C -0.13 -1.69 6.10 -11.54 -0.07 -1.76 16 18 H 0.19 1.27 8.14 -2.39 -0.02 1.25 16 19 C -0.09 -0.67 7.08 -10.02 -0.07 -0.75 16 20 H 0.19 -0.09 8.14 -2.38 -0.02 -0.11 16 21 C -0.10 -1.11 6.37 31.73 0.20 -0.91 16 22 C -0.22 -4.46 6.13 31.07 0.19 -4.27 16 23 C 0.39 9.23 7.23 30.03 0.22 9.45 16 24 O -0.48 -15.07 17.99 -1.45 -0.03 -15.09 16 25 C -0.22 -3.10 6.91 -10.92 -0.08 -3.17 16 26 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 27 N -0.34 -14.89 12.43 -54.44 -0.68 -15.56 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.05 2.05 7.20 -2.38 -0.02 2.03 16 30 H 0.08 3.08 7.50 -2.39 -0.02 3.07 16 31 H 0.21 5.55 8.06 -2.91 -0.02 5.53 16 32 H 0.16 5.94 5.91 -2.92 -0.02 5.92 16 33 H 0.43 8.62 8.82 -92.71 -0.82 7.80 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 2.54 4.38 -2.39 -0.01 2.53 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -82.17 314.92 3.04 -79.13 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.25 Total: 20.98 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.17 Total: -2.56 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -3.20 Total: -106.18 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.07 Total: -33.22 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.88 Total: 41.85 kcal Total: -82.17 3.04 -79.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906731611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.848 kcal (2) G-P(sol) polarization free energy of solvation -82.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds