Wall clock time and date at job start Tue Mar 31 2020 02:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86804 * 120.00062 * 2 1 4 4 H 1.48500 * 109.46738 * 239.99802 * 3 2 1 5 5 H 1.48501 * 109.46785 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00046 * 3 2 1 7 7 C 1.40049 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00041 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99852 * 0.02562 * 7 2 1 10 10 O 1.21681 * 120.00289 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99950 * 179.97438 * 9 7 2 12 12 C 1.46503 * 120.00018 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.46767 * 180.02562 * 12 11 9 14 14 C 1.38285 * 119.93235 * 90.00516 * 13 12 11 15 15 C 1.38105 * 120.07277 * 180.02562 * 14 13 12 16 16 C 1.38876 * 119.92855 * 359.97438 * 15 14 13 17 17 N 1.39939 * 120.06568 * 179.97438 * 16 15 14 18 18 C 1.47062 * 125.40540 * 180.02562 * 17 16 15 19 19 C 1.54102 * 103.98842 * 180.02562 * 18 17 16 20 20 N 1.47047 * 103.86597 * 359.92478 * 19 18 17 21 21 C 1.33956 * 109.18037 * 0.02562 * 20 19 18 22 22 O 1.21585 * 123.04187 * 179.97438 * 21 20 19 23 23 C 1.38863 * 119.85788 * 0.25543 * 16 15 14 24 24 C 1.38116 * 119.93010 * 359.49185 * 23 16 15 25 25 H 0.97005 * 120.00381 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99814 * 0.02562 * 11 9 7 27 27 H 1.08998 * 109.47090 * 60.00246 * 12 11 9 28 28 H 1.08996 * 109.46951 * 300.00022 * 12 11 9 29 29 H 1.08004 * 119.95891 * 359.97438 * 14 13 12 30 30 H 1.08000 * 120.03937 * 179.97438 * 15 14 13 31 31 H 1.09002 * 110.54996 * 61.40383 * 18 17 16 32 32 H 1.08997 * 110.55013 * 298.73667 * 18 17 16 33 33 H 1.09001 * 110.55154 * 118.52658 * 19 18 17 34 34 H 1.09007 * 110.54799 * 241.33320 * 19 18 17 35 35 H 0.97000 * 125.41804 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.03377 * 179.71692 * 23 16 15 37 37 H 1.08001 * 119.96402 * 180.25365 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2756 2.7464 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2163 -4.9165 0.0011 13 6 2.1957 -6.0619 0.0016 14 6 2.6440 -6.5858 1.2003 15 6 3.5419 -7.6351 1.2041 16 6 3.9942 -8.1645 0.0025 17 7 4.9044 -9.2274 0.0030 18 6 5.4588 -9.8750 -1.1953 19 6 6.3913 -10.9649 -0.6320 20 7 6.2667 -10.8164 0.8256 21 6 5.4138 -9.8192 1.0951 22 8 5.1257 -9.4810 2.2269 23 6 3.5457 -7.6329 -1.1995 24 6 2.6437 -6.5870 -1.1965 25 1 -0.4851 0.8401 0.0004 26 1 2.9189 -3.6477 0.0009 27 1 0.5894 -4.9744 -0.8886 28 1 0.5900 -4.9740 0.8913 29 1 2.2922 -6.1734 2.1344 30 1 3.8920 -8.0437 2.1405 31 1 6.0247 -9.1583 -1.7904 32 1 4.6631 -10.3220 -1.7913 33 1 6.0575 -11.9539 -0.9459 34 1 7.4197 -10.7891 -0.9479 35 1 6.7286 -11.3550 1.4871 36 1 3.8991 -8.0394 -2.1356 37 1 2.2915 -6.1759 -2.1310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918667072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:46 Heat of formation + Delta-G solvation = -50.142287 kcal Electronic energy + Delta-G solvation = -21672.388239 eV Core-core repulsion = 18220.829081 eV Total energy + Delta-G solvation = -3451.559158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.48241 -40.27910 -39.11613 -37.70700 -36.07237 -34.78181 -34.20013 -31.96024 -31.32448 -29.86753 -28.58343 -26.47814 -24.73495 -23.52165 -22.67006 -21.73000 -21.31932 -19.34807 -19.08370 -17.81927 -17.69158 -17.51373 -16.96554 -16.43312 -16.05104 -15.80797 -15.45051 -15.21832 -14.87787 -14.85118 -14.62100 -14.35721 -14.33867 -14.11113 -13.26952 -13.25411 -13.10924 -12.99271 -12.69137 -12.65244 -12.49522 -12.14158 -12.02788 -11.28641 -11.05448 -10.91099 -10.24556 -9.93491 -9.88899 -9.47719 -8.82801 -8.26945 -6.84964 0.22240 0.42556 1.35028 1.40879 1.44789 1.56458 1.90412 2.26481 2.47981 2.75855 2.87365 3.39343 3.45967 3.61773 3.70988 3.85786 4.04465 4.13312 4.13412 4.42332 4.47539 4.51865 4.67853 4.74943 4.81949 4.90691 4.91061 5.12544 5.30186 5.32605 5.41218 5.54814 5.72213 5.88390 6.02433 6.12310 6.21838 6.27774 6.37086 6.87252 7.35616 7.55195 8.49509 8.68074 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.002807 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.300089 B = 9971.065639 C =10112.081273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.538 3.462 10 O -0.633 6.633 11 N -0.749 5.749 12 C 0.179 3.821 13 C -0.127 4.127 14 C -0.080 4.080 15 C -0.174 4.174 16 C 0.186 3.814 17 N -0.574 5.574 18 C 0.073 3.927 19 C 0.094 3.906 20 N -0.726 5.726 21 C 0.683 3.317 22 O -0.618 6.618 23 C -0.144 4.144 24 C -0.071 4.071 25 H 0.275 0.725 26 H 0.393 0.607 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.441 0.559 36 H 0.165 0.835 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.222 -23.558 -6.627 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.403 5.403 12 C 0.055 3.945 13 C -0.128 4.128 14 C -0.099 4.099 15 C -0.195 4.195 16 C 0.091 3.909 17 N -0.300 5.300 18 C -0.048 4.048 19 C -0.029 4.029 20 N -0.387 5.387 21 C 0.384 3.616 22 O -0.499 6.499 23 C -0.165 4.165 24 C -0.090 4.090 25 H 0.085 0.915 26 H 0.226 0.774 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.157 0.843 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.284 0.716 36 H 0.182 0.818 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.007 -23.326 -6.107 28.941 hybrid contribution 0.395 0.536 0.704 0.969 sum 16.402 -22.789 -5.402 28.593 Atomic orbital electron populations 1.70182 1.09554 1.29050 1.36411 1.27000 0.95553 1.04997 0.91176 0.85049 0.78179 0.74610 0.80291 1.17627 1.19809 1.18016 1.21400 0.94698 0.90071 1.54851 0.89544 1.18631 0.86830 0.84270 0.76064 1.90546 1.16191 1.87938 1.57376 1.45896 1.09162 1.04232 1.81060 1.19709 0.92712 0.82155 0.99951 1.19821 1.00584 0.98073 0.94363 1.20954 0.95985 0.95190 0.97773 1.21491 1.00338 0.98697 0.98949 1.17533 0.90827 0.87992 0.94569 1.44672 1.43639 1.32997 1.08737 1.23056 0.98646 0.95780 0.87353 1.22751 1.01950 1.00327 0.77893 1.45108 1.47269 1.35855 1.10505 1.16353 0.80283 0.81133 0.83849 1.90843 1.66625 1.69243 1.23159 1.20869 1.00378 0.98627 0.96614 1.21038 0.95520 0.94969 0.97509 0.91512 0.77361 0.93391 0.94571 0.86345 0.84335 0.87148 0.86972 0.86676 0.86777 0.71574 0.81765 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.52 11.83 21.83 0.26 -51.26 16 2 C 0.03 1.58 5.50 85.31 0.47 2.05 16 3 Si 1.00 41.79 29.56 68.60 2.03 43.82 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.57 -33.50 9.54 24.83 0.24 -33.27 16 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.54 32.41 7.75 86.36 0.67 33.08 16 10 O -0.63 -43.84 15.02 -4.29 -0.06 -43.90 16 11 N -0.75 -35.72 5.54 -471.15 -2.61 -38.33 16 12 C 0.18 7.48 5.80 85.63 0.50 7.97 16 13 C -0.13 -4.16 5.25 -19.84 -0.10 -4.27 16 14 C -0.08 -2.60 9.69 22.25 0.22 -2.39 16 15 C -0.17 -5.41 9.31 22.39 0.21 -5.21 16 16 C 0.19 4.64 6.63 38.15 0.25 4.89 16 17 N -0.57 -11.15 3.17 -646.25 -2.05 -13.20 16 18 C 0.07 0.49 6.45 86.64 0.56 1.05 16 19 C 0.09 0.25 8.06 86.65 0.70 0.95 16 20 N -0.73 -8.48 6.37 -477.08 -3.04 -11.52 16 21 C 0.68 15.62 8.54 179.47 1.53 17.15 16 22 O -0.62 -20.35 14.75 -3.98 -0.06 -20.41 16 23 C -0.14 -3.01 9.49 22.39 0.21 -2.80 16 24 C -0.07 -1.87 9.69 22.25 0.22 -1.65 16 25 H 0.27 15.58 8.29 -92.70 -0.77 14.81 16 26 H 0.39 16.67 8.44 -92.70 -0.78 15.89 16 27 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 28 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 29 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.14 4.83 5.24 -2.91 -0.02 4.81 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 35 H 0.44 3.65 8.96 -92.71 -0.83 2.82 16 36 H 0.16 2.02 7.30 -2.91 -0.02 2.00 16 37 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -89.84 320.20 -0.36 -90.19 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.48 Total: 27.05 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 5.66 Total: 17.56 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -7.44 Total: -114.31 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -0.12 Total: -64.31 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -89.84 -0.36 -90.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918667072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.051 kcal (2) G-P(sol) polarization free energy of solvation -89.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds