Wall clock time and date at job start Tue Mar 31 2020 02:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00385 * 2 1 4 4 H 1.48496 * 109.47517 * 240.00363 * 3 2 1 5 5 H 1.48507 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46838 * 120.00311 * 3 2 1 7 7 C 1.38813 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00189 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.34551 * 32.87885 * 10 9 7 12 12 C 1.51373 * 110.30392 * 270.75087 * 10 9 7 13 13 C 1.38490 * 130.38890 * 78.26562 * 12 10 9 14 14 C 1.38105 * 120.21343 * 179.97438 * 13 12 10 15 15 C 1.38256 * 119.93443 * 0.02562 * 14 13 12 16 16 C 1.38102 * 119.93353 * 359.97438 * 15 14 13 17 17 C 1.38213 * 109.75424 * 258.26199 * 12 10 9 18 18 C 1.51367 * 109.76430 * 0.02562 * 17 12 10 19 19 C 1.54346 * 105.16948 * 342.80804 * 18 17 12 20 20 H 1.09000 * 110.82791 * 144.77167 * 19 18 17 21 21 N 1.46504 * 110.82385 * 268.12572 * 19 18 17 22 22 C 1.34777 * 119.99858 * 273.54756 * 21 19 18 23 23 O 1.21353 * 119.99795 * 359.97438 * 22 21 19 24 24 C 1.49453 * 119.99937 * 180.27545 * 22 21 19 25 25 N 1.34775 * 119.99799 * 179.72511 * 24 22 21 26 26 O 1.21343 * 119.99742 * 359.71852 * 24 22 21 27 27 H 0.97000 * 119.99588 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99957 * 0.02562 * 9 7 2 29 29 H 1.08002 * 119.89562 * 0.02562 * 13 12 10 30 30 H 1.08001 * 120.03592 * 180.02562 * 14 13 12 31 31 H 1.08004 * 120.03140 * 180.02562 * 15 14 13 32 32 H 1.07999 * 119.89257 * 179.97438 * 16 15 14 33 33 H 1.08998 * 110.30179 * 223.88668 * 18 17 12 34 34 H 1.08994 * 110.30713 * 101.72910 * 18 17 12 35 35 H 0.97000 * 119.99825 * 93.53851 * 21 19 18 36 36 H 0.97000 * 119.99929 * 359.97438 * 25 24 22 37 37 H 0.96995 * 119.99878 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9912 -3.5562 0.5525 12 6 2.3356 -4.1018 -1.4216 13 6 3.2948 -3.6745 -2.3246 14 6 3.3606 -4.2343 -3.5854 15 6 2.4662 -5.2242 -3.9484 16 6 1.5091 -5.6516 -3.0492 17 6 1.4415 -5.0914 -1.7843 18 6 0.5014 -5.3788 -0.6333 19 6 1.1893 -4.7763 0.6101 20 1 0.4521 -4.3658 1.3001 21 7 2.0251 -5.7765 1.2789 22 6 1.4830 -6.6047 2.1937 23 8 0.3028 -6.5215 2.4636 24 6 2.3369 -7.6210 2.8805 25 7 1.7960 -8.4454 3.7993 26 8 3.5170 -7.7039 2.6108 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 3.9940 -2.9016 -2.0417 30 1 4.1100 -3.8992 -4.2872 31 1 2.5166 -5.6633 -4.9338 32 1 0.8105 -6.4245 -3.3336 33 1 0.3720 -6.4541 -0.5101 34 1 -0.4620 -4.8981 -0.8027 35 1 2.9685 -5.8428 1.0633 36 1 0.8526 -8.3789 4.0151 37 1 2.3500 -9.1052 4.2448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960299541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:41 Heat of formation + Delta-G solvation = -28.752131 kcal Electronic energy + Delta-G solvation = -22619.435796 eV Core-core repulsion = 19168.804185 eV Total energy + Delta-G solvation = -3450.631612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74418 -39.70743 -38.26475 -36.28826 -34.38215 -33.67172 -32.55611 -31.18111 -29.78677 -28.14724 -26.21172 -25.07958 -23.15975 -22.03639 -20.79694 -20.18983 -20.05828 -18.69206 -17.61608 -17.03815 -16.29257 -15.93096 -15.80636 -15.43680 -14.78128 -14.60232 -14.50422 -14.12279 -13.70626 -13.46953 -13.11753 -12.92430 -12.89972 -12.67582 -11.79079 -11.64338 -11.45117 -11.11683 -11.03874 -10.84189 -10.65151 -10.40830 -10.19682 -10.08456 -9.90037 -9.70729 -9.16809 -9.01830 -8.34650 -8.11845 -7.13834 -5.87201 -3.17958 1.36961 1.81272 1.86959 2.46094 3.17908 3.39422 3.44003 3.44748 3.82740 4.21083 4.49808 4.53485 4.72366 5.00014 5.31239 5.39934 5.45346 5.47387 5.55433 5.68617 5.87027 5.95256 6.04380 6.09254 6.17328 6.28757 6.29994 6.45241 6.54032 6.63230 6.77939 6.87495 6.95645 7.19598 7.33241 7.46836 7.60218 7.73993 7.99047 8.28629 9.41010 9.90774 10.26771 11.34410 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.005441 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.077379 B = 5144.777011 C = 6508.861515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.702 5.702 10 C 0.208 3.792 11 H 0.067 0.933 12 C -0.094 4.094 13 C -0.089 4.089 14 C -0.127 4.127 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.098 4.098 18 C -0.085 4.085 19 C 0.132 3.868 20 H 0.113 0.887 21 N -0.678 5.678 22 C 0.505 3.495 23 O -0.521 6.521 24 C 0.515 3.485 25 N -0.825 5.825 26 O -0.522 6.522 27 H 0.258 0.742 28 H 0.388 0.612 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.412 0.588 36 H 0.414 0.586 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 -15.981 0.984 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.341 5.341 10 C 0.096 3.904 11 H 0.085 0.915 12 C -0.098 4.098 13 C -0.107 4.107 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.132 4.132 17 C -0.099 4.099 18 C -0.123 4.123 19 C 0.027 3.973 20 H 0.131 0.869 21 N -0.331 5.331 22 C 0.284 3.716 23 O -0.397 6.397 24 C 0.293 3.707 25 N -0.391 5.391 26 O -0.397 6.397 27 H 0.068 0.932 28 H 0.223 0.777 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.249 0.751 36 H 0.245 0.755 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.394 -15.605 0.917 15.996 hybrid contribution 0.308 0.693 -0.085 0.763 sum 3.701 -14.912 0.832 15.387 Atomic orbital electron populations 1.69653 1.05171 1.26143 1.56422 1.24763 0.95514 0.97782 1.02138 0.86246 0.78581 0.83259 0.77951 1.21105 1.21592 1.21074 1.19155 0.91039 0.83537 1.44022 0.90938 1.42242 1.05792 0.98714 1.87364 1.19804 0.94921 0.86250 0.89420 0.91499 1.21700 0.94240 0.94181 0.99654 1.20612 0.98346 0.98847 0.92944 1.20977 0.99605 0.97594 0.96313 1.20855 0.96532 0.98640 0.98915 1.20470 0.99135 1.00630 0.92938 1.20496 0.97385 0.97373 0.94676 1.21395 0.98204 1.01073 0.91640 1.22119 0.93678 0.87800 0.93688 0.86907 1.45738 1.14304 1.33798 1.39212 1.19970 0.87793 0.82734 0.81081 1.90777 1.15582 1.69876 1.63445 1.20250 0.87606 0.82306 0.80498 1.43520 1.15748 1.37694 1.42126 1.90815 1.15881 1.69897 1.63146 0.93198 0.77707 0.86468 0.86659 0.86763 0.87140 0.90989 0.89033 0.75145 0.75546 0.75906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.73 5.13 -53.54 -0.27 -17.01 16 10 C 0.21 3.97 3.11 -68.05 -0.21 3.75 16 11 H 0.07 1.27 7.99 -51.93 -0.42 0.86 16 12 C -0.09 -1.72 5.77 -104.21 -0.60 -2.32 16 13 C -0.09 -1.57 10.04 -39.54 -0.40 -1.96 16 14 C -0.13 -1.95 10.05 -39.62 -0.40 -2.35 16 15 C -0.13 -1.90 10.05 -39.62 -0.40 -2.30 16 16 C -0.11 -1.73 10.04 -39.53 -0.40 -2.12 16 17 C -0.10 -1.65 6.14 -104.21 -0.64 -2.29 16 18 C -0.09 -1.34 6.48 -26.85 -0.17 -1.51 16 19 C 0.13 2.19 2.94 -66.53 -0.20 1.99 16 20 H 0.11 2.06 7.64 -51.93 -0.40 1.66 16 21 N -0.68 -9.77 5.14 -52.87 -0.27 -10.04 16 22 C 0.50 7.08 7.89 -11.58 -0.09 6.99 16 23 O -0.52 -8.23 16.21 5.49 0.09 -8.14 16 24 C 0.51 6.25 8.16 -11.58 -0.09 6.16 16 25 N -0.82 -6.61 8.87 30.90 0.27 -6.33 16 26 O -0.52 -7.60 17.31 5.50 0.10 -7.51 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.39 9.90 7.83 -40.82 -0.32 9.58 16 29 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.41 5.60 8.05 -40.82 -0.33 5.27 16 36 H 0.41 2.80 8.30 -40.82 -0.34 2.46 16 37 H 0.41 2.33 8.93 -40.82 -0.36 1.96 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -31.84 326.05 -7.56 -39.40 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -4.24 Total: 17.26 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.84 Total: -2.88 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.45 Total: -59.82 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.18 Total: -15.65 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.84 -7.56 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960299541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.644 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds