Wall clock time and date at job start Tue Mar 31 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46605 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47103 * 299.99953 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.00218 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47859 * 119.99982 * 180.02562 * 13 12 11 16 16 C 1.39703 * 120.07577 * 359.72131 * 15 13 12 17 17 C 1.38055 * 120.14770 * 179.74056 * 16 15 13 18 18 C 1.38104 * 120.29453 * 0.51858 * 17 16 15 19 19 C 1.39660 * 120.14279 * 359.76270 * 18 17 16 20 20 C 1.47866 * 120.07239 * 179.97438 * 19 18 17 21 21 N 1.34776 * 119.99953 * 0.02562 * 20 19 18 22 22 O 1.21549 * 119.99883 * 180.02562 * 20 19 18 23 23 C 1.39302 * 120.07419 * 180.02562 * 15 13 12 24 24 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 25 25 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 27 27 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 28 28 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 29 29 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 30 30 H 1.08002 * 119.92634 * 0.02562 * 16 15 13 31 31 H 1.08001 * 119.85528 * 180.26379 * 17 16 15 32 32 H 1.07998 * 119.92671 * 179.73922 * 18 17 16 33 33 H 0.97002 * 119.99914 * 0.02562 * 21 20 19 34 34 H 0.96998 * 119.99998 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.14348 * 359.97438 * 23 15 13 36 36 H 1.08999 * 113.77157 * 90.38334 * 24 9 7 37 37 H 1.09002 * 113.84143 * 318.91597 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5747 -4.6853 4.2757 16 6 0.4297 -3.9898 4.9533 17 6 0.4425 -3.9604 6.3335 18 6 -0.5299 -4.6262 7.0536 19 6 -1.5363 -5.3301 6.3887 20 6 -2.5764 -6.0428 7.1612 21 7 -2.5540 -6.0132 8.5085 22 8 -3.4514 -6.6554 6.5812 23 6 -1.5580 -5.3598 4.9959 24 6 -0.1058 -2.7570 0.0001 25 1 -0.4850 0.8401 -0.0004 26 1 2.5619 -4.0327 0.6538 27 1 1.8325 -4.2346 -0.9996 28 1 -0.1594 -4.9598 0.2327 29 1 1.0580 -3.5720 2.5714 30 1 1.1952 -3.4702 4.3962 31 1 1.2188 -3.4178 6.8525 32 1 -0.5117 -4.6027 8.1331 33 1 -1.8559 -5.5240 8.9713 34 1 -3.2365 -6.4804 9.0152 35 1 -2.3341 -5.9026 4.4769 36 1 -0.5312 -2.8713 -0.9969 37 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030538463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:07 Heat of formation + Delta-G solvation = 13.053042 kcal Electronic energy + Delta-G solvation = -21961.917606 eV Core-core repulsion = 18513.098803 eV Total energy + Delta-G solvation = -3448.818803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.51325 -39.52786 -38.18046 -37.22230 -34.15367 -33.43583 -32.03981 -31.23381 -30.93873 -27.55668 -24.85036 -24.53090 -24.20832 -22.66467 -21.38256 -20.13302 -19.34422 -18.60735 -17.18882 -16.85498 -16.58024 -16.24627 -15.57834 -15.07025 -14.93600 -14.63000 -14.59424 -14.36622 -13.94810 -13.75940 -13.61463 -12.76533 -12.65492 -12.52901 -12.20644 -11.64465 -11.51530 -11.26447 -10.92226 -10.57542 -10.35096 -10.29453 -10.02932 -9.86011 -9.70186 -9.53188 -9.26016 -9.22232 -8.88449 -8.42314 -6.94204 -5.80004 -3.14202 0.46381 0.92299 2.45865 3.12722 3.15721 3.34691 3.40135 3.43180 3.50026 3.84226 4.40637 4.44516 4.50637 4.62581 4.91925 4.99863 5.08628 5.19268 5.39640 5.44952 5.54893 5.68935 5.96571 6.03217 6.09882 6.12885 6.21432 6.36615 6.42733 6.48966 6.55656 6.78119 6.99435 7.19776 7.30417 7.57182 7.90592 7.95545 7.96168 8.54503 8.99621 9.66420 10.54224 11.36113 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.003586 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.750710 B = 7805.247755 C = 8433.466522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.612 5.612 10 C 0.111 3.889 11 C 0.089 3.911 12 N -0.685 5.685 13 C 0.555 3.445 14 O -0.541 6.541 15 C -0.130 4.130 16 C -0.056 4.056 17 C -0.133 4.133 18 C -0.068 4.068 19 C -0.153 4.153 20 C 0.566 3.434 21 N -0.853 5.853 22 O -0.534 6.534 23 C -0.002 4.002 24 C 0.151 3.849 25 H 0.253 0.747 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.402 0.598 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.400 0.600 34 H 0.405 0.595 35 H 0.150 0.850 36 H 0.037 0.963 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -9.715 17.648 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.017 4.017 12 N -0.334 5.334 13 C 0.341 3.659 14 O -0.419 6.419 15 C -0.134 4.134 16 C -0.075 4.075 17 C -0.151 4.151 18 C -0.087 4.087 19 C -0.156 4.156 20 C 0.352 3.648 21 N -0.417 5.417 22 O -0.411 6.411 23 C -0.021 4.021 24 C 0.024 3.976 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.238 0.762 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.230 0.770 34 H 0.236 0.764 35 H 0.168 0.832 36 H 0.055 0.945 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.379 -10.136 16.657 19.502 hybrid contribution 0.950 1.470 0.530 1.829 sum 1.328 -8.666 17.186 19.293 Atomic orbital electron populations 1.69839 1.04996 1.25272 1.56234 1.24794 0.95619 0.97503 1.02367 0.86083 0.78697 0.83855 0.77301 1.20490 1.21750 1.21739 1.19049 0.90231 0.81982 1.44215 0.90227 1.46187 1.02261 0.99145 1.86332 1.22919 0.94340 0.86926 0.97387 1.22908 0.99184 1.00418 0.79183 1.45435 1.29287 1.51576 1.07142 1.18086 0.81992 0.79414 0.86406 1.90768 1.36412 1.44013 1.70734 1.20065 0.97614 1.01784 0.93903 1.21686 0.96387 0.94502 0.94876 1.21059 0.99574 1.00602 0.93834 1.21417 0.93050 0.94465 0.99734 1.19782 0.98033 1.03640 0.94135 1.18233 0.84491 0.79738 0.82364 1.43731 1.33970 1.57075 1.06936 1.90851 1.37265 1.43108 1.69886 1.21398 0.95896 0.92811 0.92018 1.22749 0.88185 0.89351 0.97273 0.93640 0.93466 0.93459 0.89046 0.76163 0.84554 0.84553 0.85357 0.77026 0.76405 0.83207 0.94540 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 11.39 55.49 0.63 -26.19 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.12 10.70 -15.06 -0.16 -6.28 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -14.99 3.70 -177.88 -0.66 -15.65 16 10 C 0.11 2.14 8.68 -2.96 -0.03 2.12 16 11 C 0.09 1.71 4.40 -70.15 -0.31 1.40 16 12 N -0.68 -11.88 5.32 -56.29 -0.30 -12.18 16 13 C 0.55 9.75 7.77 -12.33 -0.10 9.65 16 14 O -0.54 -11.26 15.96 5.32 0.08 -11.18 16 15 C -0.13 -1.86 5.87 -105.02 -0.62 -2.48 16 16 C -0.06 -0.62 9.54 -39.10 -0.37 -1.00 16 17 C -0.13 -1.14 10.02 -39.70 -0.40 -1.54 16 18 C -0.07 -0.55 9.54 -39.10 -0.37 -0.92 16 19 C -0.15 -1.72 5.87 -105.02 -0.62 -2.34 16 20 C 0.57 6.46 8.05 -12.32 -0.10 6.36 16 21 N -0.85 -5.41 8.82 30.53 0.27 -5.14 16 22 O -0.53 -8.47 17.18 5.32 0.09 -8.38 16 23 C 0.00 -0.02 9.14 -38.78 -0.35 -0.38 16 24 C 0.15 3.56 7.32 -2.85 -0.02 3.54 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.71 7.51 -51.93 -0.39 1.32 16 29 H 0.40 6.38 6.76 -40.82 -0.28 6.10 16 30 H 0.14 1.39 6.39 -52.49 -0.34 1.05 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.13 0.52 6.39 -52.49 -0.34 0.19 16 33 H 0.40 1.27 6.85 -40.82 -0.28 0.99 16 34 H 0.40 2.05 8.93 -40.82 -0.36 1.68 16 35 H 0.15 2.40 7.23 -52.49 -0.38 2.02 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -35.68 321.49 -7.57 -43.24 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.97 Total: 6.20 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -3.54 Total: 7.89 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.06 Total: -59.16 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.68 -7.57 -43.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030538463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.296 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds