Wall clock time and date at job start Tue Mar 31 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47373 * 355.35745 * 3 2 1 5 5 H 1.48501 * 109.47224 * 115.36378 * 3 2 1 6 6 H 1.48505 * 109.47188 * 235.35974 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46494 * 114.57476 * 272.66929 * 11 10 9 13 13 C 1.34783 * 119.99677 * 248.66915 * 12 11 10 14 14 O 1.21528 * 120.00217 * 0.02562 * 13 12 11 15 15 C 1.48038 * 119.99754 * 179.97438 * 13 12 11 16 16 C 1.39550 * 120.00174 * 359.73189 * 15 13 12 17 17 C 1.37817 * 119.99935 * 179.71763 * 16 15 13 18 18 C 1.39559 * 120.00082 * 0.55322 * 17 16 15 19 19 C 1.48029 * 120.00088 * 179.70338 * 18 17 16 20 20 N 1.34769 * 120.00277 * 0.02562 * 19 18 17 21 21 O 1.21529 * 119.99672 * 180.02562 * 19 18 17 22 22 C 1.39562 * 119.99564 * 359.71734 * 18 17 16 23 23 C 1.37815 * 120.00308 * 0.02562 * 22 18 17 24 24 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 25 25 H 0.97005 * 119.99783 * 184.87920 * 1 2 3 26 26 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 27 27 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 28 28 H 1.08994 * 114.08496 * 139.78289 * 11 10 9 29 29 H 0.97001 * 120.00473 * 68.67052 * 12 11 10 30 30 H 1.07999 * 120.00165 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.00045 * 180.27385 * 17 16 15 32 32 H 0.96999 * 120.00138 * 0.02562 * 20 19 18 33 33 H 0.96999 * 120.00248 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.99529 * 179.97438 * 22 18 17 35 35 H 1.07993 * 120.00168 * 179.97438 * 23 22 18 36 36 H 1.09003 * 113.46756 * 321.86183 * 24 9 7 37 37 H 1.09002 * 113.47202 * 92.24195 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1133 5 1 3.0170 1.7466 1.2651 6 1 3.1868 1.6485 -1.1519 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4709 -1.3273 1.7645 13 6 6.5871 -0.9364 2.4109 14 8 7.5395 -0.5198 1.7814 15 6 6.6526 -1.0135 3.8878 16 6 5.5565 -1.4856 4.6112 17 6 5.6196 -1.5628 5.9857 18 6 6.7754 -1.1580 6.6551 19 6 6.8407 -1.2348 8.1319 20 7 5.7843 -1.6960 8.8301 21 8 7.8471 -0.8818 8.7147 22 6 7.8694 -0.6806 5.9320 23 6 7.8083 -0.6083 4.5571 24 6 4.4119 -2.2308 -0.3351 25 1 -0.4850 -0.8371 0.0715 26 1 4.6555 0.1232 -1.2580 27 1 4.2793 0.6479 0.4390 28 1 6.3869 -1.2364 -0.1717 29 1 4.7106 -1.6595 2.2671 30 1 4.6604 -1.7943 4.0936 31 1 4.7730 -1.9323 6.5452 32 1 4.9813 -1.9781 8.3650 33 1 5.8273 -1.7467 9.7979 34 1 8.7637 -0.3669 6.4500 35 1 8.6547 -0.2385 3.9976 36 1 4.2436 -3.1278 0.2608 37 1 4.6305 -2.4537 -1.3795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031378255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:47 Heat of formation + Delta-G solvation = 20.566748 kcal Electronic energy + Delta-G solvation = -21998.364857 eV Core-core repulsion = 18549.871873 eV Total energy + Delta-G solvation = -3448.492984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65641 -39.84296 -38.55763 -37.54131 -34.24017 -33.74132 -32.36613 -31.29149 -31.14338 -27.95742 -25.46103 -25.34465 -23.07971 -22.59596 -21.56810 -20.36293 -19.64265 -18.69434 -17.75189 -17.55232 -17.08175 -16.18668 -15.39212 -15.37491 -15.16790 -15.00350 -14.66346 -14.43731 -13.96853 -13.84388 -13.82408 -13.39467 -13.08164 -12.73506 -12.60148 -12.09135 -11.44880 -11.44195 -11.09698 -10.62864 -10.48656 -10.38453 -10.11688 -9.94922 -9.58438 -9.35400 -9.32682 -9.28132 -8.94692 -8.62016 -7.25244 -6.40528 -3.32503 0.19080 1.03098 2.24122 3.00981 3.08269 3.18419 3.37856 3.39999 3.60224 3.67939 4.33472 4.40471 4.52217 4.57986 4.64092 4.73923 4.97857 5.04364 5.08054 5.32923 5.36148 5.62135 5.75542 5.83323 5.86108 5.93486 6.03683 6.12696 6.16628 6.23919 6.32796 6.35717 6.45930 6.86457 6.90707 6.99817 7.65763 7.84102 8.14570 8.26245 8.88425 9.41174 10.26586 11.11991 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.003914 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.128024 B = 7152.735072 C = 7844.558240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.021 4.021 3 Si 1.070 2.930 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.310 4.310 8 H 0.083 0.917 9 N -0.628 5.628 10 C 0.085 3.915 11 C 0.097 3.903 12 N -0.687 5.687 13 C 0.554 3.446 14 O -0.539 6.539 15 C -0.100 4.100 16 C -0.092 4.092 17 C -0.092 4.092 18 C -0.122 4.122 19 C 0.564 3.436 20 N -0.850 5.850 21 O -0.539 6.539 22 C -0.068 4.068 23 C -0.069 4.069 24 C 0.114 3.886 25 H 0.261 0.739 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.406 0.594 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.403 0.597 33 H 0.406 0.594 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.049 0.951 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 -5.276 13.439 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.220 4.220 3 Si 0.903 3.097 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.436 4.436 8 H 0.101 0.899 9 N -0.357 5.357 10 C -0.042 4.042 11 C -0.009 4.009 12 N -0.337 5.337 13 C 0.341 3.659 14 O -0.417 6.417 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.126 4.126 19 C 0.350 3.650 20 N -0.414 5.414 21 O -0.416 6.416 22 C -0.087 4.087 23 C -0.087 4.087 24 C -0.013 4.013 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.243 0.757 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.233 0.767 33 H 0.237 0.763 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.068 0.932 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.018 -3.085 13.144 18.755 hybrid contribution -0.885 -2.025 0.337 2.236 sum 12.132 -5.110 13.482 18.843 Atomic orbital electron populations 1.70932 1.05377 1.29488 1.51594 1.25704 0.96374 1.00958 0.99002 0.83690 0.73725 0.76012 0.76306 1.22247 1.22276 1.21329 1.20104 0.78774 0.95743 1.48934 0.89923 1.46136 1.02401 1.01638 1.85569 1.23278 0.87782 0.94323 0.98802 1.22526 0.99042 0.99549 0.79821 1.45434 1.16461 1.64372 1.07458 1.18256 0.82907 0.77883 0.86890 1.90752 1.36603 1.46262 1.68088 1.20263 0.95453 1.01113 0.93475 1.21373 0.98030 0.97592 0.94062 1.21207 0.96863 0.98568 0.94439 1.20045 0.96039 1.03694 0.92774 1.18325 0.82921 0.76404 0.87334 1.43763 1.17933 1.68291 1.11414 1.90818 1.31159 1.48355 1.71282 1.21257 0.98081 0.95983 0.93330 1.21299 0.97522 0.96275 0.93639 1.22708 0.87079 0.93525 0.97970 0.92873 0.92555 0.92754 0.87605 0.75716 0.84411 0.84917 0.76722 0.76316 0.83925 0.83690 0.93231 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 3 Si 1.07 26.43 25.13 -169.99 -4.27 22.16 16 4 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.29 -6.95 6.65 56.52 0.38 -6.57 16 6 H -0.29 -6.66 6.13 56.52 0.35 -6.31 16 7 C -0.31 -8.44 11.08 -15.06 -0.17 -8.61 16 8 H 0.08 2.36 8.05 -52.49 -0.42 1.94 16 9 N -0.63 -14.42 3.70 -184.60 -0.68 -15.10 16 10 C 0.08 1.74 5.54 -8.36 -0.05 1.69 16 11 C 0.10 1.65 4.61 -67.67 -0.31 1.33 16 12 N -0.69 -10.67 5.35 -54.37 -0.29 -10.97 16 13 C 0.55 8.52 7.78 -12.24 -0.10 8.42 16 14 O -0.54 -9.71 15.93 5.34 0.09 -9.62 16 15 C -0.10 -1.25 5.88 -104.90 -0.62 -1.87 16 16 C -0.09 -0.95 9.53 -39.25 -0.37 -1.32 16 17 C -0.09 -0.79 9.53 -39.24 -0.37 -1.16 16 18 C -0.12 -1.22 5.88 -104.90 -0.62 -1.84 16 19 C 0.56 5.73 8.05 -12.25 -0.10 5.63 16 20 N -0.85 -5.08 8.82 30.57 0.27 -4.81 16 21 O -0.54 -7.47 17.17 5.34 0.09 -7.38 16 22 C -0.07 -0.72 9.58 -39.24 -0.38 -1.10 16 23 C -0.07 -0.79 9.58 -39.24 -0.38 -1.17 16 24 C 0.11 2.05 8.44 -8.51 -0.07 1.98 16 25 H 0.26 7.87 8.73 -40.82 -0.36 7.52 16 26 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16 27 H 0.05 1.19 4.65 -51.93 -0.24 0.95 16 28 H 0.11 1.69 7.45 -51.93 -0.39 1.30 16 29 H 0.41 5.88 6.79 -40.82 -0.28 5.60 16 30 H 0.14 1.29 6.39 -52.49 -0.34 0.95 16 31 H 0.13 0.68 6.39 -52.49 -0.34 0.35 16 32 H 0.40 1.38 6.85 -40.82 -0.28 1.10 16 33 H 0.41 1.89 8.93 -40.82 -0.36 1.53 16 34 H 0.14 1.42 7.64 -52.49 -0.40 1.02 16 35 H 0.15 1.62 7.64 -52.49 -0.40 1.22 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -35.51 314.16 -6.85 -42.36 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.92 Total: 5.14 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.62 Total: 1.30 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.06 Total: -58.69 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.18 Total: -17.00 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -4.27 Total: 22.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.51 -6.85 -42.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031378255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.928 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds