Wall clock time and date at job start Tue Mar 31 2020 02:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47373 * 355.35745 * 3 2 1 5 5 H 1.48501 * 109.47224 * 115.36378 * 3 2 1 6 6 H 1.48505 * 109.47188 * 235.35974 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46494 * 114.57476 * 272.66929 * 11 10 9 13 13 C 1.34783 * 119.99677 * 248.66915 * 12 11 10 14 14 O 1.21528 * 120.00217 * 0.02562 * 13 12 11 15 15 C 1.48038 * 119.99754 * 179.97438 * 13 12 11 16 16 C 1.39550 * 120.00174 * 359.73189 * 15 13 12 17 17 C 1.37817 * 119.99935 * 179.71763 * 16 15 13 18 18 C 1.39559 * 120.00082 * 0.55322 * 17 16 15 19 19 C 1.48029 * 120.00088 * 179.70338 * 18 17 16 20 20 N 1.34769 * 120.00277 * 0.02562 * 19 18 17 21 21 O 1.21529 * 119.99672 * 180.02562 * 19 18 17 22 22 C 1.39562 * 119.99564 * 359.71734 * 18 17 16 23 23 C 1.37815 * 120.00308 * 0.02562 * 22 18 17 24 24 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 25 25 H 0.97005 * 119.99783 * 184.87920 * 1 2 3 26 26 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 27 27 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 28 28 H 1.08994 * 114.08496 * 139.78289 * 11 10 9 29 29 H 0.97001 * 120.00473 * 68.67052 * 12 11 10 30 30 H 1.07999 * 120.00165 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.00045 * 180.27385 * 17 16 15 32 32 H 0.96999 * 120.00138 * 0.02562 * 20 19 18 33 33 H 0.96999 * 120.00248 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.99529 * 179.97438 * 22 18 17 35 35 H 1.07993 * 120.00168 * 179.97438 * 23 22 18 36 36 H 1.09003 * 113.46756 * 321.86183 * 24 9 7 37 37 H 1.09002 * 113.47202 * 92.24195 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1133 5 1 3.0170 1.7466 1.2651 6 1 3.1868 1.6485 -1.1519 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4709 -1.3273 1.7645 13 6 6.5871 -0.9364 2.4109 14 8 7.5395 -0.5198 1.7814 15 6 6.6526 -1.0135 3.8878 16 6 5.5565 -1.4856 4.6112 17 6 5.6196 -1.5628 5.9857 18 6 6.7754 -1.1580 6.6551 19 6 6.8407 -1.2348 8.1319 20 7 5.7843 -1.6960 8.8301 21 8 7.8471 -0.8818 8.7147 22 6 7.8694 -0.6806 5.9320 23 6 7.8083 -0.6083 4.5571 24 6 4.4119 -2.2308 -0.3351 25 1 -0.4850 -0.8371 0.0715 26 1 4.6555 0.1232 -1.2580 27 1 4.2793 0.6479 0.4390 28 1 6.3869 -1.2364 -0.1717 29 1 4.7106 -1.6595 2.2671 30 1 4.6604 -1.7943 4.0936 31 1 4.7730 -1.9323 6.5452 32 1 4.9813 -1.9781 8.3650 33 1 5.8273 -1.7467 9.7979 34 1 8.7637 -0.3669 6.4500 35 1 8.6547 -0.2385 3.9976 36 1 4.2436 -3.1278 0.2608 37 1 4.6305 -2.4537 -1.3795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031378255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:46 Heat of formation + Delta-G solvation = -8.403453 kcal Electronic energy + Delta-G solvation = -21999.621100 eV Core-core repulsion = 18549.871873 eV Total energy + Delta-G solvation = -3449.749227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66322 -40.92137 -39.80655 -38.64225 -35.22761 -34.95989 -34.22145 -32.25981 -31.96695 -29.73855 -27.02372 -26.36890 -24.46661 -23.61582 -22.66427 -21.40788 -21.13338 -19.59601 -19.44025 -18.70468 -17.89255 -17.49177 -16.91458 -16.29262 -16.17350 -15.97105 -15.88262 -15.65189 -15.44382 -15.24996 -15.01323 -14.60794 -14.46880 -13.73809 -13.56255 -13.46640 -13.27267 -12.79400 -12.47121 -12.22427 -12.02621 -11.38705 -11.35762 -11.26773 -11.14396 -10.97548 -10.78539 -10.25361 -10.14207 -9.95467 -9.20443 -8.61926 -5.44897 -0.68229 0.24436 1.31735 1.40227 1.45733 1.65471 1.98240 2.05676 2.42964 2.52042 2.79268 2.94423 3.25518 3.47978 3.60042 3.65758 3.81452 3.90724 4.18150 4.26632 4.28692 4.34984 4.56151 4.64577 4.67823 4.76694 4.86908 4.88847 5.05243 5.15990 5.18756 5.19937 5.51510 5.63774 5.82418 5.97281 6.34042 6.45813 6.71840 7.06751 7.21006 7.34160 8.27852 8.93762 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.003914 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.128024 B = 7152.735072 C = 7844.558240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 1.105 2.895 4 H -0.309 1.309 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.284 4.284 8 H 0.059 0.941 9 N -0.654 5.654 10 C 0.074 3.926 11 C 0.119 3.881 12 N -0.687 5.687 13 C 0.556 3.444 14 O -0.569 6.569 15 C -0.118 4.118 16 C -0.091 4.091 17 C -0.078 4.078 18 C -0.123 4.123 19 C 0.563 3.437 20 N -0.826 5.826 21 O -0.583 6.583 22 C -0.074 4.074 23 C -0.073 4.073 24 C 0.118 3.882 25 H 0.249 0.751 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.123 0.877 29 H 0.411 0.589 30 H 0.150 0.850 31 H 0.173 0.827 32 H 0.418 0.582 33 H 0.415 0.585 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.055 -5.994 14.463 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.271 4.271 3 Si 0.933 3.067 4 H -0.237 1.237 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.412 4.412 8 H 0.077 0.923 9 N -0.384 5.384 10 C -0.052 4.052 11 C 0.012 3.988 12 N -0.337 5.337 13 C 0.345 3.655 14 O -0.449 6.449 15 C -0.121 4.121 16 C -0.110 4.110 17 C -0.097 4.097 18 C -0.126 4.126 19 C 0.348 3.652 20 N -0.391 5.391 21 O -0.464 6.464 22 C -0.092 4.092 23 C -0.091 4.091 24 C -0.007 4.007 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.141 0.859 29 H 0.249 0.751 30 H 0.167 0.833 31 H 0.190 0.810 32 H 0.251 0.749 33 H 0.248 0.752 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.956 -3.862 14.182 20.269 hybrid contribution -1.141 -1.932 0.081 2.245 sum 12.815 -5.794 14.264 20.031 Atomic orbital electron populations 1.71018 1.06695 1.28814 1.55325 1.26737 0.96386 1.04021 0.99933 0.83253 0.73030 0.72672 0.77737 1.23735 1.20691 1.19101 1.19993 0.81002 0.94468 1.45730 0.92270 1.46180 1.01626 1.04654 1.85917 1.23502 0.87895 0.94462 0.99352 1.22277 0.98840 0.97040 0.80672 1.45436 1.16869 1.64481 1.06960 1.18634 0.82142 0.76749 0.87977 1.90732 1.37566 1.47609 1.69028 1.20129 0.96801 1.03275 0.91877 1.21540 0.97614 0.97006 0.94803 1.21551 0.97330 0.96914 0.93860 1.20184 0.96267 1.03209 0.92938 1.18373 0.83127 0.76292 0.87369 1.43599 1.17289 1.66240 1.11969 1.90807 1.33006 1.50634 1.71923 1.21311 0.98703 0.96226 0.93000 1.21274 0.97347 0.96560 0.93969 1.22895 0.85132 0.93282 0.99402 0.94182 0.91580 0.93962 0.85912 0.75102 0.83282 0.80979 0.74908 0.75225 0.83836 0.84069 0.91843 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.88 13.70 21.65 0.30 -60.58 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 1.10 53.03 25.13 68.60 1.72 54.76 16 4 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 5 H -0.28 -12.56 6.65 99.48 0.66 -11.90 16 6 H -0.27 -11.66 6.13 99.48 0.61 -11.05 16 7 C -0.28 -15.41 11.08 84.03 0.93 -14.48 16 8 H 0.06 3.42 8.05 -2.91 -0.02 3.40 16 9 N -0.65 -28.79 3.70 -737.96 -2.73 -31.52 16 10 C 0.07 2.86 5.54 83.27 0.46 3.32 16 11 C 0.12 3.69 4.61 45.55 0.21 3.90 16 12 N -0.69 -19.74 5.35 -444.21 -2.38 -22.12 16 13 C 0.56 16.17 7.78 86.84 0.68 16.85 16 14 O -0.57 -19.79 15.93 -3.80 -0.06 -19.85 16 15 C -0.12 -2.75 5.88 -20.04 -0.12 -2.87 16 16 C -0.09 -1.63 9.53 22.49 0.21 -1.42 16 17 C -0.08 -1.07 9.53 22.49 0.21 -0.86 16 18 C -0.12 -2.17 5.88 -20.04 -0.12 -2.29 16 19 C 0.56 10.22 8.05 86.84 0.70 10.92 16 20 N -0.83 -7.27 8.82 -175.49 -1.55 -8.82 16 21 O -0.58 -15.60 17.17 -3.81 -0.07 -15.67 16 22 C -0.07 -1.49 9.58 22.49 0.22 -1.27 16 23 C -0.07 -1.61 9.58 22.49 0.22 -1.40 16 24 C 0.12 3.90 8.44 83.18 0.70 4.61 16 25 H 0.25 15.51 8.73 -92.70 -0.81 14.70 16 26 H 0.07 2.46 7.73 -2.39 -0.02 2.44 16 27 H 0.04 1.75 4.65 -2.39 -0.01 1.74 16 28 H 0.12 3.52 7.45 -2.39 -0.02 3.50 16 29 H 0.41 10.89 6.79 -92.71 -0.63 10.26 16 30 H 0.15 2.32 6.39 -2.91 -0.02 2.30 16 31 H 0.17 0.91 6.39 -2.91 -0.02 0.89 16 32 H 0.42 1.12 6.85 -92.71 -0.64 0.49 16 33 H 0.42 2.67 8.93 -92.71 -0.83 1.84 16 34 H 0.14 2.83 7.64 -2.91 -0.02 2.81 16 35 H 0.14 3.15 7.64 -2.91 -0.02 3.13 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -77.77 314.16 -1.10 -78.88 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -1.11 Total: 13.93 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 4.77 Total: 10.99 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -6.36 Total: -123.04 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.13 Total: -35.51 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.72 Total: 54.76 kcal Total: -77.77 -1.10 -78.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031378255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.473 kcal (2) G-P(sol) polarization free energy of solvation -77.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds