Wall clock time and date at job start Tue Mar 31 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00002 * 2 1 4 4 H 1.48495 * 109.47162 * 239.99882 * 3 2 1 5 5 H 1.48497 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46719 * 119.99963 * 3 2 1 7 7 C 1.38813 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.47868 * 126.94627 * 0.02562 * 9 7 2 11 11 C 1.56018 * 105.10634 * 182.00282 * 10 9 7 12 12 H 1.09003 * 116.24998 * 159.68565 * 11 10 9 13 13 C 1.57087 * 99.60565 * 32.80809 * 11 10 9 14 14 C 1.49288 * 126.94390 * 180.02562 * 9 7 2 15 15 H 1.09003 * 116.15485 * 16.69981 * 14 9 7 16 16 C 1.56015 * 104.09020 * 247.55572 * 14 9 7 17 17 N 1.47864 * 105.10537 * 288.76697 * 16 14 9 18 18 C 1.34788 * 126.94501 * 182.02500 * 17 16 14 19 19 O 1.21534 * 119.99893 * 174.28900 * 18 17 16 20 20 C 1.47975 * 119.99751 * 354.28986 * 18 17 16 21 21 C 1.39919 * 120.91669 * 5.58281 * 20 18 17 22 22 C 1.38010 * 119.01045 * 179.79821 * 21 20 18 23 23 N 1.31992 * 120.88773 * 0.47419 * 22 21 20 24 24 O 1.41598 * 118.98104 * 179.75829 * 23 22 21 25 25 C 1.31987 * 122.03010 * 359.78123 * 23 22 21 26 26 C 1.38009 * 120.88789 * 359.97438 * 25 23 22 27 27 H 0.96998 * 120.00398 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.31867 * 300.91397 * 10 9 7 29 29 H 1.09000 * 110.31394 * 63.09775 * 10 9 7 30 30 H 1.08998 * 112.36774 * 191.71416 * 13 11 10 31 31 H 1.08996 * 112.36571 * 64.27299 * 13 11 10 32 32 H 1.09001 * 110.31989 * 47.67576 * 16 14 9 33 33 H 1.09003 * 110.31736 * 169.75683 * 16 14 9 34 34 H 1.08003 * 120.49300 * 0.03210 * 21 20 18 35 35 H 1.07998 * 119.55239 * 180.23271 * 22 21 20 36 36 H 1.07995 * 119.55742 * 180.02562 * 25 23 22 37 37 H 1.08006 * 120.49779 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3638 -4.1103 0.0521 12 1 -1.3412 -4.4455 0.3992 13 6 0.8840 -4.5251 0.9115 14 6 1.9103 -3.7617 -0.0005 15 1 2.9607 -3.8367 0.2806 16 6 1.5274 -4.3374 -1.3991 17 7 0.0697 -4.5757 -1.3319 18 6 -0.7098 -5.1062 -2.2950 19 8 -1.8802 -5.3423 -2.0682 20 6 -0.1404 -5.4011 -3.6287 21 6 1.2279 -5.2462 -3.8764 22 6 1.7176 -5.5366 -5.1336 23 7 0.9127 -5.9457 -6.0964 24 8 1.4575 -6.2274 -7.3727 25 6 -0.3843 -6.1000 -5.9063 26 6 -0.9566 -5.8368 -4.6783 27 1 -0.4851 0.8400 0.0004 28 1 -0.5815 -2.0913 0.8765 29 1 -0.5738 -2.1535 -0.9121 30 1 1.0492 -5.6025 0.9099 31 1 0.8451 -4.1189 1.9222 32 1 1.7570 -3.6143 -2.1818 33 1 2.0573 -5.2724 -1.5815 34 1 1.8916 -4.9082 -3.0943 35 1 2.7729 -5.4237 -5.3334 36 1 -1.0059 -6.4375 -6.7224 37 1 -2.0187 -5.9648 -4.5299 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032263123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:57 Heat of formation + Delta-G solvation = 111.760265 kcal Electronic energy + Delta-G solvation = -23081.529307 eV Core-core repulsion = 19636.990770 eV Total energy + Delta-G solvation = -3444.538537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.57347 -40.09097 -38.12622 -34.81369 -33.79687 -32.33775 -31.56067 -30.10402 -29.20850 -28.78542 -25.85864 -25.08087 -24.45937 -23.43074 -21.20724 -20.13406 -19.35199 -18.14738 -17.54640 -17.13551 -16.78164 -15.97178 -15.64948 -15.51876 -15.11616 -14.76219 -14.28001 -14.13779 -13.65860 -13.47885 -13.15185 -12.46645 -12.15392 -11.94067 -11.92330 -11.49660 -11.24352 -11.18006 -11.01011 -10.85654 -10.77754 -10.41991 -10.24311 -9.98870 -9.93576 -9.78910 -9.46614 -8.86309 -8.74276 -8.36483 -7.11267 -5.92212 -3.27843 0.05960 0.41169 2.40863 2.51811 2.82001 3.28777 3.33451 3.34535 3.35823 4.08999 4.27460 4.28312 4.29750 4.34873 4.61752 4.80493 4.88897 5.09851 5.20951 5.22209 5.34310 5.36001 5.50911 5.53926 5.54834 5.58013 5.80937 5.94763 6.15645 6.19639 6.35306 6.39735 6.56483 6.92253 7.23161 7.26237 7.54792 7.67456 7.93017 8.10621 8.94087 9.55398 10.21662 11.19913 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.004831 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.336428 B = 5794.313170 C = 6495.820520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.002 4.002 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.172 3.828 11 C 0.103 3.897 12 H 0.121 0.879 13 C -0.150 4.150 14 C 0.142 3.858 15 H 0.110 0.890 16 C 0.064 3.936 17 N -0.598 5.598 18 C 0.570 3.430 19 O -0.540 6.540 20 C -0.080 4.080 21 C -0.120 4.120 22 C 0.069 3.931 23 N -0.109 5.109 24 O -0.549 6.549 25 C 0.064 3.936 26 C -0.068 4.068 27 H 0.256 0.744 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.187 0.813 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -11.031 -0.959 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.047 3.953 11 C 0.002 3.998 12 H 0.138 0.862 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.128 0.872 16 C -0.061 4.061 17 N -0.331 5.331 18 C 0.358 3.642 19 O -0.419 6.419 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.076 4.076 23 N 0.213 4.787 24 O -0.605 6.605 25 C -0.081 4.081 26 C -0.088 4.088 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.211 0.789 35 H 0.204 0.796 36 H 0.204 0.796 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.490 -10.943 -1.284 11.029 hybrid contribution 0.477 0.962 -0.396 1.144 sum 0.967 -9.981 -1.680 10.167 Atomic orbital electron populations 1.69877 1.05021 1.25731 1.55850 1.24826 0.95680 0.97839 1.01555 0.86188 0.78506 0.82975 0.77989 1.21049 1.21549 1.20982 1.18993 0.90429 0.81918 1.45268 0.90022 1.45249 1.01229 0.99279 1.86266 1.21968 0.84903 0.86734 1.01707 1.25054 0.98110 0.97857 0.78738 0.86151 1.24143 0.96258 0.99193 0.99365 1.23214 0.96977 0.86430 0.90142 0.87190 1.23782 0.80175 0.99000 1.03109 1.49866 1.09286 1.58803 1.15169 1.17445 0.85591 0.78425 0.82783 1.90779 1.15963 1.54012 1.81131 1.20716 0.93935 0.98784 0.95686 1.23470 0.96612 0.96099 0.97634 1.22710 0.99683 0.97980 0.87266 1.43338 1.04792 1.18826 1.11738 1.97654 1.79634 1.85095 0.98138 1.22614 0.85365 1.00607 0.99480 1.21958 1.02680 0.94446 0.89706 0.93345 0.92141 0.93237 0.91328 0.89191 0.89772 0.91637 0.78876 0.79616 0.79632 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.10 10.56 55.49 0.59 -24.51 16 2 C 0.00 -0.04 5.49 -17.43 -0.10 -0.14 16 3 Si 0.91 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.24 -5.80 10.38 -15.06 -0.16 -5.95 16 8 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.60 -12.68 3.01 -156.34 -0.47 -13.15 16 10 C 0.17 3.66 4.75 -1.68 -0.01 3.65 16 11 C 0.10 1.69 5.40 -60.79 -0.33 1.36 16 12 H 0.12 1.91 8.12 -51.93 -0.42 1.48 16 13 C -0.15 -2.11 6.84 -22.29 -0.15 -2.26 16 14 C 0.14 2.18 5.46 -62.55 -0.34 1.83 16 15 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 16 C 0.06 0.86 4.27 -1.68 -0.01 0.85 16 17 N -0.60 -9.18 3.02 -155.46 -0.47 -9.65 16 18 C 0.57 8.81 7.89 -12.26 -0.10 8.71 16 19 O -0.54 -9.76 16.89 5.34 0.09 -9.67 16 20 C -0.08 -0.99 5.91 -104.65 -0.62 -1.61 16 21 C -0.12 -1.28 8.85 -39.04 -0.35 -1.62 16 22 C 0.07 0.79 10.67 -17.57 -0.19 0.60 16 23 N -0.11 -1.57 3.58 -13.30 -0.05 -1.61 16 24 O -0.55 -11.15 20.04 -11.47 -0.23 -11.38 16 25 C 0.06 0.72 10.67 -17.57 -0.19 0.54 16 26 C -0.07 -0.73 9.68 -39.04 -0.38 -1.11 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.06 1.45 7.46 -51.93 -0.39 1.06 16 29 H 0.05 1.23 7.68 -51.93 -0.40 0.84 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.21 6.88 -51.93 -0.36 0.85 16 33 H 0.07 0.63 6.90 -51.93 -0.36 0.27 16 34 H 0.19 1.79 3.00 -52.49 -0.16 1.64 16 35 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.19 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.17 1.57 7.75 -52.48 -0.41 1.16 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -34.93 308.70 -7.96 -42.89 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.15 Total: 2.09 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.90 Total: 4.86 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.40 Total: -48.93 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.14 Total: -21.05 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.93 -7.96 -42.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032263123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.651 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds