Wall clock time and date at job start Tue Mar 31 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00002 * 2 1 4 4 H 1.48495 * 109.47162 * 239.99882 * 3 2 1 5 5 H 1.48497 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46719 * 119.99963 * 3 2 1 7 7 C 1.38813 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.47868 * 126.94627 * 0.02562 * 9 7 2 11 11 C 1.56018 * 105.10634 * 182.00282 * 10 9 7 12 12 H 1.09003 * 116.24998 * 159.68565 * 11 10 9 13 13 C 1.57087 * 99.60565 * 32.80809 * 11 10 9 14 14 C 1.49288 * 126.94390 * 180.02562 * 9 7 2 15 15 H 1.09003 * 116.15485 * 16.69981 * 14 9 7 16 16 C 1.56015 * 104.09020 * 247.55572 * 14 9 7 17 17 N 1.47864 * 105.10537 * 288.76697 * 16 14 9 18 18 C 1.34788 * 126.94501 * 182.02500 * 17 16 14 19 19 O 1.21534 * 119.99893 * 174.28900 * 18 17 16 20 20 C 1.47975 * 119.99751 * 354.28986 * 18 17 16 21 21 C 1.39919 * 120.91669 * 5.58281 * 20 18 17 22 22 C 1.38010 * 119.01045 * 179.79821 * 21 20 18 23 23 N 1.31992 * 120.88773 * 0.47419 * 22 21 20 24 24 O 1.41598 * 118.98104 * 179.75829 * 23 22 21 25 25 C 1.31987 * 122.03010 * 359.78123 * 23 22 21 26 26 C 1.38009 * 120.88789 * 359.97438 * 25 23 22 27 27 H 0.96998 * 120.00398 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.31867 * 300.91397 * 10 9 7 29 29 H 1.09000 * 110.31394 * 63.09775 * 10 9 7 30 30 H 1.08998 * 112.36774 * 191.71416 * 13 11 10 31 31 H 1.08996 * 112.36571 * 64.27299 * 13 11 10 32 32 H 1.09001 * 110.31989 * 47.67576 * 16 14 9 33 33 H 1.09003 * 110.31736 * 169.75683 * 16 14 9 34 34 H 1.08003 * 120.49300 * 0.03210 * 21 20 18 35 35 H 1.07998 * 119.55239 * 180.23271 * 22 21 20 36 36 H 1.07995 * 119.55742 * 180.02562 * 25 23 22 37 37 H 1.08006 * 120.49779 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3638 -4.1103 0.0521 12 1 -1.3412 -4.4455 0.3992 13 6 0.8840 -4.5251 0.9115 14 6 1.9103 -3.7617 -0.0005 15 1 2.9607 -3.8367 0.2806 16 6 1.5274 -4.3374 -1.3991 17 7 0.0697 -4.5757 -1.3319 18 6 -0.7098 -5.1062 -2.2950 19 8 -1.8802 -5.3423 -2.0682 20 6 -0.1404 -5.4011 -3.6287 21 6 1.2279 -5.2462 -3.8764 22 6 1.7176 -5.5366 -5.1336 23 7 0.9127 -5.9457 -6.0964 24 8 1.4575 -6.2274 -7.3727 25 6 -0.3843 -6.1000 -5.9063 26 6 -0.9566 -5.8368 -4.6783 27 1 -0.4851 0.8400 0.0004 28 1 -0.5815 -2.0913 0.8765 29 1 -0.5738 -2.1535 -0.9121 30 1 1.0492 -5.6025 0.9099 31 1 0.8451 -4.1189 1.9222 32 1 1.7570 -3.6143 -2.1818 33 1 2.0573 -5.2724 -1.5815 34 1 1.8916 -4.9082 -3.0943 35 1 2.7729 -5.4237 -5.3334 36 1 -1.0059 -6.4375 -6.7224 37 1 -2.0187 -5.9648 -4.5299 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032263123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:57 Heat of formation + Delta-G solvation = 87.919029 kcal Electronic energy + Delta-G solvation = -23082.563141 eV Core-core repulsion = 19636.990770 eV Total energy + Delta-G solvation = -3445.572370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.59226 -41.33861 -39.42946 -35.97168 -35.30779 -33.59487 -32.79045 -31.42198 -30.53148 -30.27730 -27.16976 -26.50347 -25.44382 -24.78428 -22.45080 -21.46054 -20.68929 -19.38144 -18.60430 -18.43975 -18.00366 -17.29135 -16.80457 -16.67717 -16.28757 -16.14317 -15.74200 -15.15806 -15.08473 -14.81982 -14.19834 -13.74169 -13.50180 -13.35300 -13.12607 -13.00753 -12.78283 -12.66558 -12.27385 -12.23385 -12.12853 -12.04400 -11.76804 -11.51272 -11.25595 -10.80424 -10.79656 -10.68954 -10.07208 -9.65334 -8.88648 -7.83642 -5.18001 -0.94663 -0.45240 1.41283 1.44840 1.50187 1.50900 1.56998 1.64716 2.29618 2.50190 3.02019 3.33572 3.34780 3.41354 3.43705 3.49615 3.71603 3.76771 3.86921 4.01235 4.21038 4.25468 4.39580 4.48369 4.56635 4.61133 4.66996 4.76527 4.90304 5.05131 5.15856 5.24100 5.47897 5.50645 5.66606 5.69313 5.77284 6.12117 6.47121 6.88679 7.05419 7.73835 8.42343 9.27380 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.004831 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.336428 B = 5794.313170 C = 6495.820520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.307 1.307 6 H -0.275 1.275 7 C -0.227 4.227 8 H 0.098 0.902 9 N -0.616 5.616 10 C 0.183 3.817 11 C 0.108 3.892 12 H 0.123 0.877 13 C -0.129 4.129 14 C 0.136 3.864 15 H 0.140 0.860 16 C 0.066 3.934 17 N -0.601 5.601 18 C 0.568 3.432 19 O -0.571 6.571 20 C -0.085 4.085 21 C -0.103 4.103 22 C 0.079 3.921 23 N -0.131 5.131 24 O -0.613 6.613 25 C 0.076 3.924 26 C -0.058 4.058 27 H 0.243 0.757 28 H 0.020 0.980 29 H 0.001 0.999 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.213 0.787 35 H 0.208 0.792 36 H 0.208 0.792 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -13.039 -0.638 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.234 1.234 6 H -0.201 1.201 7 C -0.355 4.355 8 H 0.116 0.884 9 N -0.341 5.341 10 C 0.057 3.943 11 C 0.006 3.994 12 H 0.141 0.859 13 C -0.168 4.168 14 C 0.029 3.971 15 H 0.158 0.842 16 C -0.057 4.057 17 N -0.334 5.334 18 C 0.357 3.643 19 O -0.452 6.452 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.067 4.067 23 N 0.188 4.812 24 O -0.666 6.666 25 C -0.069 4.069 26 C -0.077 4.077 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.019 0.981 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.229 0.771 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.504 -13.005 -0.988 13.281 hybrid contribution -0.164 1.560 -0.370 1.612 sum 2.340 -11.445 -1.357 11.760 Atomic orbital electron populations 1.70110 1.06479 1.25129 1.58835 1.25556 0.96252 1.00901 1.03292 0.85274 0.77063 0.79441 0.78288 1.20398 1.23377 1.20095 1.19481 0.91317 0.83018 1.41735 0.88443 1.45491 1.01411 1.01105 1.86083 1.21559 0.85135 0.90025 0.97553 1.24858 0.99824 0.94111 0.80587 0.85900 1.24061 0.93437 1.01208 0.98139 1.23669 0.98676 0.83065 0.91671 0.84207 1.23818 0.79231 1.01370 1.01292 1.49898 1.10290 1.58482 1.14684 1.17806 0.85185 0.77827 0.83496 1.90766 1.17342 1.55394 1.81743 1.20642 0.95000 0.99460 0.94520 1.23533 0.95896 0.95139 0.97511 1.23125 1.00701 0.96163 0.86665 1.43444 1.05931 1.20813 1.11006 1.97628 1.80389 1.87713 1.00907 1.22996 0.84733 0.98981 1.00177 1.22103 1.03328 0.93432 0.88811 0.94801 0.96187 0.98118 0.87420 0.89819 0.90621 0.86106 0.77066 0.77497 0.77548 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.76 10.56 21.65 0.23 -54.54 16 2 C -0.07 -3.51 5.49 84.86 0.47 -3.05 16 3 Si 0.97 42.73 29.55 68.60 2.03 44.75 16 4 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.23 -10.85 10.38 84.03 0.87 -9.98 16 8 H 0.10 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.62 -25.67 3.01 -648.53 -1.95 -27.62 16 10 C 0.18 8.02 4.75 87.16 0.41 8.44 16 11 C 0.11 3.41 5.40 46.32 0.25 3.66 16 12 H 0.12 3.83 8.12 -2.39 -0.02 3.81 16 13 C -0.13 -3.17 6.84 33.47 0.23 -2.94 16 14 C 0.14 3.65 5.46 46.93 0.26 3.91 16 15 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 16 C 0.07 1.48 4.27 87.16 0.37 1.85 16 17 N -0.60 -16.93 3.02 -764.03 -2.31 -19.24 16 18 C 0.57 16.33 7.89 86.82 0.68 17.01 16 19 O -0.57 -19.96 16.89 -3.82 -0.06 -20.02 16 20 C -0.09 -1.87 5.91 -19.88 -0.12 -1.99 16 21 C -0.10 -1.81 8.85 22.62 0.20 -1.61 16 22 C 0.08 1.57 10.67 84.61 0.90 2.48 16 23 N -0.13 -3.55 3.58 -195.99 -0.70 -4.26 16 24 O -0.61 -24.75 20.04 -38.78 -0.78 -25.53 16 25 C 0.08 1.55 10.67 84.62 0.90 2.45 16 26 C -0.06 -1.08 9.68 22.62 0.22 -0.86 16 27 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.02 1.02 7.46 -2.39 -0.02 1.00 16 29 H 0.00 0.03 7.68 -2.39 -0.02 0.01 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.08 1.90 6.88 -2.39 -0.02 1.88 16 33 H 0.12 1.50 6.90 -2.39 -0.02 1.48 16 34 H 0.21 2.87 3.00 -2.91 -0.01 2.86 16 35 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.19 2.96 7.75 -2.91 -0.02 2.94 16 Total: -1.00 -81.05 308.70 3.21 -77.84 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.10 Total: 9.24 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 5.65 Total: 19.37 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.73 Total: -105.65 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.84 Total: -45.55 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -81.05 3.21 -77.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032263123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.760 kcal (2) G-P(sol) polarization free energy of solvation -81.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds