Wall clock time and date at job start Tue Mar 31 2020 02:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30017 * 124.84234 * 2 1 4 4 C 1.35848 * 108.85796 * 179.97438 * 3 2 1 5 5 C 1.39828 * 133.62124 * 180.02562 * 4 3 2 6 6 C 1.36295 * 120.03922 * 179.97438 * 5 4 3 7 7 C 1.40092 * 120.40962 * 359.97438 * 6 5 4 8 8 C 1.47628 * 119.92198 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99520 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00191 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99992 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47194 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.47194 * 179.97438 * 12 11 10 14 14 C 1.36940 * 119.99929 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00124 * 0.02562 * 14 13 12 16 16 C 1.38816 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00003 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00050 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47650 * 89.99730 * 18 16 14 20 20 H 1.48498 * 109.47074 * 210.00085 * 18 16 14 21 21 H 1.48506 * 109.47155 * 329.99565 * 18 16 14 22 22 C 1.39431 * 120.15046 * 0.02562 * 7 6 5 23 23 C 1.38292 * 119.61948 * 0.02562 * 22 7 6 24 24 O 1.34146 * 124.83952 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.47097 * 270.04370 * 1 2 3 26 26 H 1.08999 * 109.46762 * 30.03639 * 1 2 3 27 27 H 1.08997 * 109.47352 * 150.03931 * 1 2 3 28 28 H 1.08002 * 119.98518 * 359.97438 * 5 4 3 29 29 H 1.07996 * 119.79336 * 179.70020 * 6 5 4 30 30 H 0.96997 * 120.00181 * 0.02562 * 10 8 7 31 31 H 1.09000 * 109.47118 * 300.00073 * 11 10 8 32 32 H 1.09007 * 109.47049 * 59.99920 * 11 10 8 33 33 H 1.09000 * 109.47096 * 300.00022 * 12 11 10 34 34 H 1.08998 * 109.47387 * 59.99694 * 12 11 10 35 35 H 0.97002 * 120.00332 * 359.97438 * 13 12 11 36 36 H 0.97005 * 120.00498 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.19399 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2498 1.0671 0.0000 4 6 3.5558 0.6930 0.0006 5 6 4.7619 1.4004 0.0013 6 6 5.9473 0.7279 0.0023 7 6 5.9680 -0.6728 0.0031 8 6 7.2582 -1.3903 0.0048 9 8 7.2776 -2.6060 0.0050 10 7 8.4144 -0.6978 0.0060 11 6 9.6947 -1.4099 0.0070 12 6 10.8415 -0.3971 0.0089 13 7 12.1218 -1.1092 0.0106 14 6 13.2966 -0.4055 0.0119 15 1 13.2793 0.6743 0.0122 16 6 14.5097 -1.0802 0.0141 17 7 14.5308 -2.3962 0.0153 18 14 16.1122 -0.1204 0.0166 19 1 16.5346 0.1342 1.4173 20 1 17.1611 -0.9064 -0.6816 21 1 15.9151 1.1740 -0.6841 22 6 4.7727 -1.3908 0.0024 23 6 3.5678 -0.7122 0.0004 24 8 2.2734 -1.1010 0.0005 25 1 -0.3634 0.0008 1.0277 26 1 -0.3633 0.8897 -0.5144 27 1 -0.3634 -0.8903 -0.5132 28 1 4.7542 2.4804 0.0011 29 1 6.8765 1.2783 -0.0021 30 1 8.3988 0.2720 0.0061 31 1 9.7616 -2.0357 0.8970 32 1 9.7633 -2.0354 -0.8830 33 1 10.7747 0.2290 -0.8808 34 1 10.7727 0.2281 0.8991 35 1 12.1374 -2.0791 0.0108 36 1 15.3786 -2.8678 0.0164 37 1 4.7878 -2.4707 0.0035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129934973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:12 Heat of formation + Delta-G solvation = -11.817548 kcal Electronic energy + Delta-G solvation = -21067.601962 eV Core-core repulsion = 17617.704689 eV Total energy + Delta-G solvation = -3449.897273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.43816 -41.18924 -38.76537 -37.33956 -36.00387 -35.60344 -33.33966 -32.60912 -31.94966 -30.17362 -28.69226 -25.78278 -24.68458 -24.06731 -23.01538 -22.82028 -21.77073 -19.57696 -19.28698 -18.70460 -18.04368 -17.63403 -17.11978 -16.72177 -16.51584 -15.80179 -15.32998 -15.29710 -15.23034 -14.98931 -14.88515 -14.53317 -14.25025 -14.09186 -13.58401 -13.30622 -13.10549 -13.02959 -12.73640 -12.67251 -12.49414 -12.32613 -12.07092 -11.86331 -11.70691 -11.27515 -10.97967 -10.28686 -10.07092 -9.61016 -9.04952 -7.95628 -5.26781 -0.81856 0.00289 0.98896 1.24744 1.49773 1.51922 1.60297 1.76165 1.99874 2.56991 2.58523 2.71058 3.28089 3.38830 3.50873 3.82429 3.83478 3.88609 4.02400 4.16927 4.19930 4.23204 4.54629 4.60420 4.61167 4.64582 4.77740 4.85560 4.98908 5.01170 5.07301 5.14958 5.17218 5.28708 5.40636 5.50571 6.25154 6.40335 6.41541 7.05327 7.31551 8.03854 8.26088 9.27961 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.055175 B = 0.002288 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.355228 B =12235.096354 C =12716.701906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.262 3.738 3 N -0.512 5.512 4 C 0.034 3.966 5 C -0.067 4.067 6 C -0.071 4.071 7 C -0.116 4.116 8 C 0.561 3.439 9 O -0.578 6.578 10 N -0.698 5.698 11 C 0.126 3.874 12 C 0.147 3.853 13 N -0.748 5.748 14 C -0.246 4.246 15 H 0.085 0.915 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.979 3.021 19 H -0.287 1.287 20 H -0.298 1.298 21 H -0.265 1.265 22 C -0.034 4.034 23 C -0.024 4.024 24 O -0.220 6.220 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.170 0.830 29 H 0.176 0.824 30 H 0.418 0.582 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.374 0.626 36 H 0.252 0.748 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.140 9.685 -0.058 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.053 3.947 3 N -0.242 5.242 4 C -0.078 4.078 5 C -0.086 4.086 6 C -0.091 4.091 7 C -0.120 4.120 8 C 0.348 3.652 9 O -0.459 6.459 10 N -0.351 5.351 11 C 0.002 3.998 12 C 0.021 3.979 13 N -0.391 5.391 14 C -0.378 4.378 15 H 0.103 0.897 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.808 3.192 19 H -0.214 1.214 20 H -0.225 1.225 21 H -0.190 1.190 22 C -0.054 4.054 23 C -0.074 4.074 24 O -0.112 6.112 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.187 0.813 29 H 0.193 0.807 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -30.222 9.615 -0.067 31.715 hybrid contribution 1.375 -0.826 0.025 1.605 sum -28.847 8.789 -0.042 30.156 Atomic orbital electron populations 1.20841 0.76867 1.07422 1.07123 1.27788 0.98449 0.77295 0.91201 1.70683 1.00856 1.29752 1.22945 1.20477 0.93312 0.91256 1.02751 1.20291 0.87408 1.01907 0.98957 1.21219 0.99875 0.91499 0.96510 1.19510 0.91173 0.94564 1.06731 1.18253 0.84285 0.86610 0.76005 1.90796 1.88086 1.15283 1.51700 1.45549 1.04422 1.11306 1.73839 1.21238 0.81834 0.95135 1.01599 1.20873 0.83815 0.93639 0.99603 1.42426 1.01058 1.05831 1.89784 1.19660 0.84913 0.91676 1.41522 0.89732 1.25677 1.01394 0.96541 1.03493 1.69836 1.25687 1.07365 1.59222 0.85060 0.78982 0.77765 0.77432 1.21371 1.22453 1.18965 1.19863 0.86742 1.00996 0.97821 1.20117 0.84109 0.94817 1.08384 1.84509 1.15086 1.37111 1.74531 0.86036 0.86037 0.86744 0.81257 0.80668 0.74259 0.92399 0.92381 0.94100 0.94111 0.79446 0.93967 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.51 71.24 0.75 0.47 16 2 C 0.26 4.28 8.23 88.38 0.73 5.01 16 3 N -0.51 -10.61 11.33 -296.04 -3.35 -13.97 16 4 C 0.03 0.75 7.24 39.46 0.29 1.03 16 5 C -0.07 -1.10 10.03 22.20 0.22 -0.88 16 6 C -0.07 -1.13 9.46 22.27 0.21 -0.92 16 7 C -0.12 -2.63 5.88 -20.06 -0.12 -2.75 16 8 C 0.56 15.93 7.76 86.72 0.67 16.61 16 9 O -0.58 -21.56 16.33 -3.99 -0.07 -21.62 16 10 N -0.70 -17.54 5.50 -466.17 -2.57 -20.11 16 11 C 0.13 4.17 5.79 86.38 0.50 4.67 16 12 C 0.15 5.38 6.37 86.38 0.55 5.93 16 13 N -0.75 -37.28 5.60 -343.46 -1.92 -39.21 16 14 C -0.25 -13.41 9.99 84.03 0.84 -12.57 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 16 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 17 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 18 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 C -0.03 -0.83 9.60 22.57 0.22 -0.62 16 23 C -0.02 -0.57 7.42 22.84 0.17 -0.40 16 24 O -0.22 -4.65 10.77 -9.55 -0.10 -4.75 16 25 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 26 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.18 1.52 6.37 -2.91 -0.02 1.50 16 30 H 0.42 7.22 6.47 -92.71 -0.60 6.62 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.37 20.26 7.67 -92.71 -0.71 19.55 16 36 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 37 H 0.14 3.56 7.63 -2.91 -0.02 3.53 16 Total: -1.00 -77.24 326.58 -0.39 -77.63 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.18 Total: 22.34 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.49 Total: 11.56 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -7.56 Total: -132.61 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.17 Total: -26.37 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.24 -0.39 -77.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129934973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.817 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds