Wall clock time and date at job start Tue Mar 31 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47158 * 269.99664 * 3 2 1 5 5 H 1.48503 * 109.46796 * 30.00173 * 3 2 1 6 6 H 1.48501 * 109.46805 * 149.99798 * 3 2 1 7 7 C 1.38815 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99866 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99658 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99510 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46881 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47231 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00244 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99369 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99803 * 179.97438 * 13 12 11 16 16 C 1.50705 * 109.46578 * 179.97438 * 15 13 12 17 17 N 1.29740 * 126.29138 * 269.99414 * 16 15 13 18 18 O 1.41361 * 109.74059 * 180.02562 * 17 16 15 19 19 C 1.34820 * 109.32695 * 0.02562 * 18 17 16 20 20 C 1.38983 * 133.44621 * 179.97438 * 19 18 17 21 21 C 1.37794 * 119.79420 * 180.02562 * 20 19 18 22 22 C 1.38785 * 120.59884 * 0.02562 * 21 20 19 23 23 C 1.36622 * 120.51766 * 359.97438 * 22 21 20 24 24 C 1.39679 * 119.79071 * 0.02562 * 23 22 21 25 25 H 0.97009 * 119.99761 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00086 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47407 * 60.00708 * 10 9 7 28 28 H 1.09001 * 109.47553 * 300.00080 * 10 9 7 29 29 H 1.08994 * 109.47350 * 59.99882 * 11 10 9 30 30 H 1.09007 * 109.47201 * 300.00084 * 11 10 9 31 31 H 0.96998 * 120.00055 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.47274 * 60.00609 * 15 13 12 33 33 H 1.08996 * 109.47109 * 299.99645 * 15 13 12 34 34 H 1.08003 * 120.10178 * 359.97438 * 20 19 18 35 35 H 1.08005 * 119.70221 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.74182 * 179.72896 * 22 21 20 37 37 H 1.08005 * 120.10555 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 7 6.3488 -3.4601 0.0014 13 6 7.6966 -3.4602 0.0008 14 8 8.3029 -2.4098 -0.0007 15 6 8.4500 -4.7653 0.0019 16 6 9.9316 -4.4899 0.0003 17 7 10.6858 -4.3511 -1.0463 18 8 12.0184 -4.1034 -0.6451 19 6 12.0839 -4.0905 0.7014 20 6 13.1213 -3.8978 1.6061 21 6 12.8671 -3.9446 2.9595 22 6 11.5831 -4.1832 3.4293 23 6 10.5496 -4.3751 2.5567 24 6 10.7859 -4.3317 1.1807 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 -0.0004 27 1 3.8485 -3.0434 -0.8881 28 1 3.8490 -3.0416 0.8918 29 1 5.8796 -1.6190 0.8903 30 1 5.8796 -1.6205 -0.8896 31 1 5.8638 -4.3001 0.0022 32 1 8.1863 -5.3378 -0.8874 33 1 8.1871 -5.3358 0.8926 34 1 14.1238 -3.7128 1.2493 35 1 13.6744 -3.7951 3.6612 36 1 11.4003 -4.2213 4.4930 37 1 9.5531 -4.5607 2.9296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131002498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:32 Heat of formation + Delta-G solvation = 43.185746 kcal Electronic energy + Delta-G solvation = -21306.531295 eV Core-core repulsion = 17859.019144 eV Total energy + Delta-G solvation = -3447.512151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.09704 -39.78770 -38.06526 -36.04408 -34.81143 -34.05269 -31.61565 -31.05045 -30.43555 -30.07512 -27.83788 -23.79727 -23.46522 -23.04047 -21.60442 -21.45389 -20.14264 -17.98191 -17.89418 -17.46012 -17.26516 -16.08893 -15.93653 -15.78762 -15.72591 -14.64731 -14.51858 -14.34567 -13.97997 -13.90687 -13.71584 -13.53334 -12.76422 -12.68029 -12.65111 -12.58560 -11.70596 -11.59641 -11.56692 -11.51349 -11.39934 -11.02049 -10.88636 -10.20039 -10.08550 -9.66343 -9.30889 -9.16754 -8.97347 -8.95880 -7.35169 -5.83944 -3.21776 0.26987 0.90962 1.64573 2.17229 2.42030 2.99468 3.26511 3.35630 3.39270 3.43554 3.62107 3.88041 4.18570 4.46922 4.53102 4.54105 4.68816 4.76757 4.80252 4.92227 5.03958 5.24718 5.35778 5.39221 5.48007 5.54210 5.58855 5.71677 5.82565 5.88654 5.95855 6.23848 6.24811 6.51339 6.52029 6.91884 7.33645 7.88857 8.03644 8.33953 9.11392 9.83756 10.01563 11.33763 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.002655 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.420728 B =10541.789254 C =10759.956678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.718 5.718 13 C 0.516 3.484 14 O -0.530 6.530 15 C -0.076 4.076 16 C 0.154 3.846 17 N -0.274 5.274 18 O -0.091 6.091 19 C 0.084 3.916 20 C -0.127 4.127 21 C -0.062 4.062 22 C -0.150 4.150 23 C -0.036 4.036 24 C -0.185 4.185 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.404 0.596 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.317 -14.085 6.488 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.016 4.016 12 N -0.370 5.370 13 C 0.300 3.700 14 O -0.406 6.406 15 C -0.117 4.117 16 C -0.027 4.027 17 N -0.016 5.016 18 O -0.101 6.101 19 C 0.030 3.970 20 C -0.147 4.147 21 C -0.081 4.081 22 C -0.168 4.168 23 C -0.056 4.056 24 C -0.188 4.188 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.238 0.762 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 25.668 -13.358 5.109 29.384 hybrid contribution 0.173 0.868 0.717 1.140 sum 25.842 -12.489 5.826 29.287 Atomic orbital electron populations 1.69699 1.05117 1.26038 1.56953 1.24678 0.95267 0.97340 1.01575 0.86549 0.79266 0.84768 0.77975 1.20883 1.21544 1.20191 1.18997 0.80170 0.94879 1.43939 0.89057 1.42534 1.04181 1.01829 1.91375 1.20727 0.87459 0.90331 0.99375 1.21648 0.92518 0.84828 1.02653 1.45798 1.05638 1.10607 1.74950 1.20011 0.82623 0.90254 0.77149 1.90788 1.68008 1.33095 1.48675 1.20255 0.85933 0.97977 1.07494 1.23714 0.95970 0.92978 0.90085 1.79873 0.86400 1.17325 1.18023 1.89160 1.24271 1.79279 1.17407 1.20293 0.95303 0.96410 0.84947 1.20066 0.97585 1.05921 0.91088 1.21157 0.97430 0.95392 0.94143 1.20821 0.92560 1.03146 1.00300 1.20467 1.00034 0.95047 0.90062 1.20617 0.91628 1.11506 0.95090 0.92894 0.80367 0.94806 0.94873 0.91173 0.91189 0.76180 0.85725 0.85547 0.84341 0.84249 0.84693 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.52 5.41 -59.91 -0.32 -17.84 16 10 C 0.15 2.63 6.37 -4.04 -0.03 2.61 16 11 C 0.11 1.63 5.79 -4.04 -0.02 1.60 16 12 N -0.72 -8.13 5.56 -60.29 -0.33 -8.47 16 13 C 0.52 6.39 7.82 -10.99 -0.09 6.30 16 14 O -0.53 -9.21 16.03 5.56 0.09 -9.12 16 15 C -0.08 -0.63 6.30 -29.03 -0.18 -0.81 16 16 C 0.15 1.82 5.95 -80.12 -0.48 1.35 16 17 N -0.27 -3.89 12.81 34.91 0.45 -3.44 16 18 O -0.09 -1.27 12.06 7.68 0.09 -1.18 16 19 C 0.08 1.00 7.48 -38.47 -0.29 0.71 16 20 C -0.13 -1.08 10.07 -39.47 -0.40 -1.48 16 21 C -0.06 -0.41 10.02 -39.54 -0.40 -0.80 16 22 C -0.15 -1.03 9.97 -39.96 -0.40 -1.43 16 23 C -0.04 -0.31 10.05 -39.63 -0.40 -0.71 16 24 C -0.18 -2.08 6.32 -105.17 -0.67 -2.74 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.36 8.36 5.53 -40.82 -0.23 8.14 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.40 3.17 8.47 -40.82 -0.35 2.83 16 32 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -37.02 327.90 -7.01 -44.03 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.39 Total: 4.30 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.59 Total: -2.40 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.56 Total: -57.88 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.18 Total: -10.30 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.02 -7.01 -44.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131002498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.220 kcal (2) G-P(sol) polarization free energy of solvation -37.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds