Wall clock time and date at job start Tue Mar 31 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47158 * 269.99664 * 3 2 1 5 5 H 1.48503 * 109.46796 * 30.00173 * 3 2 1 6 6 H 1.48501 * 109.46805 * 149.99798 * 3 2 1 7 7 C 1.38815 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99866 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99658 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99510 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46881 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47231 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00244 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99369 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99803 * 179.97438 * 13 12 11 16 16 C 1.50705 * 109.46578 * 179.97438 * 15 13 12 17 17 N 1.29740 * 126.29138 * 269.99414 * 16 15 13 18 18 O 1.41361 * 109.74059 * 180.02562 * 17 16 15 19 19 C 1.34820 * 109.32695 * 0.02562 * 18 17 16 20 20 C 1.38983 * 133.44621 * 179.97438 * 19 18 17 21 21 C 1.37794 * 119.79420 * 180.02562 * 20 19 18 22 22 C 1.38785 * 120.59884 * 0.02562 * 21 20 19 23 23 C 1.36622 * 120.51766 * 359.97438 * 22 21 20 24 24 C 1.39679 * 119.79071 * 0.02562 * 23 22 21 25 25 H 0.97009 * 119.99761 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00086 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47407 * 60.00708 * 10 9 7 28 28 H 1.09001 * 109.47553 * 300.00080 * 10 9 7 29 29 H 1.08994 * 109.47350 * 59.99882 * 11 10 9 30 30 H 1.09007 * 109.47201 * 300.00084 * 11 10 9 31 31 H 0.96998 * 120.00055 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.47274 * 60.00609 * 15 13 12 33 33 H 1.08996 * 109.47109 * 299.99645 * 15 13 12 34 34 H 1.08003 * 120.10178 * 359.97438 * 20 19 18 35 35 H 1.08005 * 119.70221 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.74182 * 179.72896 * 22 21 20 37 37 H 1.08005 * 120.10555 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 7 6.3488 -3.4601 0.0014 13 6 7.6966 -3.4602 0.0008 14 8 8.3029 -2.4098 -0.0007 15 6 8.4500 -4.7653 0.0019 16 6 9.9316 -4.4899 0.0003 17 7 10.6858 -4.3511 -1.0463 18 8 12.0184 -4.1034 -0.6451 19 6 12.0839 -4.0905 0.7014 20 6 13.1213 -3.8978 1.6061 21 6 12.8671 -3.9446 2.9595 22 6 11.5831 -4.1832 3.4293 23 6 10.5496 -4.3751 2.5567 24 6 10.7859 -4.3317 1.1807 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 -0.0004 27 1 3.8485 -3.0434 -0.8881 28 1 3.8490 -3.0416 0.8918 29 1 5.8796 -1.6190 0.8903 30 1 5.8796 -1.6205 -0.8896 31 1 5.8638 -4.3001 0.0022 32 1 8.1863 -5.3378 -0.8874 33 1 8.1871 -5.3358 0.8926 34 1 14.1238 -3.7128 1.2493 35 1 13.6744 -3.7951 3.6612 36 1 11.4003 -4.2213 4.4930 37 1 9.5531 -4.5607 2.9296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131002498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:31 Heat of formation + Delta-G solvation = 15.071577 kcal Electronic energy + Delta-G solvation = -21307.750417 eV Core-core repulsion = 17859.019144 eV Total energy + Delta-G solvation = -3448.731273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.86566 -40.82249 -38.70450 -37.52036 -35.71858 -35.53252 -33.50536 -31.74790 -31.22332 -30.99389 -29.22791 -25.37002 -24.28412 -23.72068 -23.19854 -22.42943 -21.05075 -19.84310 -18.59182 -18.35120 -18.21212 -17.09095 -16.89005 -16.87160 -16.44536 -16.32711 -15.67323 -15.59583 -15.10495 -14.94175 -14.77129 -14.58061 -14.35177 -13.59917 -13.44381 -13.28872 -13.17154 -13.09938 -12.72099 -12.60689 -12.39722 -12.29007 -12.08483 -12.08117 -11.83332 -11.14074 -11.03846 -10.21782 -9.98493 -9.63838 -9.36030 -8.05411 -5.40418 -0.42193 0.26158 0.88192 1.38127 1.38881 1.40358 1.47296 1.47564 2.06470 2.46274 2.62789 2.90489 3.16256 3.26718 3.54740 3.58886 3.83030 3.94960 4.04708 4.10777 4.17583 4.22853 4.29630 4.35107 4.46713 4.55914 4.76421 4.91226 5.00548 5.09518 5.10839 5.27689 5.30900 5.39171 5.68857 5.73000 6.13201 6.17744 6.43989 7.03309 7.12915 7.78452 7.94856 9.15306 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.002655 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.420728 B =10541.789254 C =10759.956678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.254 1.254 7 C -0.236 4.236 8 H 0.066 0.934 9 N -0.761 5.761 10 C 0.150 3.850 11 C 0.122 3.878 12 N -0.702 5.702 13 C 0.518 3.482 14 O -0.584 6.584 15 C -0.067 4.067 16 C 0.154 3.846 17 N -0.317 5.317 18 O -0.122 6.122 19 C 0.049 3.951 20 C -0.140 4.140 21 C -0.051 4.051 22 C -0.147 4.147 23 C -0.044 4.044 24 C -0.208 4.208 25 H 0.259 0.741 26 H 0.366 0.634 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.424 0.576 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.917 -15.011 8.514 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.178 1.178 7 C -0.366 4.366 8 H 0.084 0.916 9 N -0.407 5.407 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.356 5.356 13 C 0.304 3.696 14 O -0.464 6.464 15 C -0.107 4.107 16 C -0.027 4.027 17 N -0.061 5.061 18 O -0.131 6.131 19 C -0.004 4.004 20 C -0.159 4.159 21 C -0.070 4.070 22 C -0.165 4.165 23 C -0.064 4.064 24 C -0.212 4.212 25 H 0.068 0.932 26 H 0.198 0.802 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.262 0.738 32 H 0.169 0.831 33 H 0.191 0.809 34 H 0.171 0.829 35 H 0.194 0.806 36 H 0.186 0.814 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 27.314 -14.356 7.146 31.673 hybrid contribution -0.284 1.039 0.184 1.093 sum 27.030 -13.317 7.330 31.011 Atomic orbital electron populations 1.69863 1.06989 1.26772 1.59352 1.25469 0.96092 1.01143 1.02492 0.85481 0.78683 0.79990 0.78075 1.20630 1.22039 1.17847 1.19015 0.82187 0.93794 1.41645 0.91608 1.42585 1.02806 1.04042 1.91278 1.20854 0.88491 0.88172 1.00138 1.21235 0.91028 0.86333 1.01680 1.45561 1.05461 1.10203 1.74335 1.20615 0.82487 0.90939 0.75533 1.90777 1.69038 1.35434 1.51146 1.20449 0.83143 0.96045 1.11065 1.24291 0.97256 0.91208 0.89955 1.79778 0.86866 1.19753 1.19751 1.89067 1.24650 1.80337 1.19073 1.20878 0.96966 0.98138 0.84426 1.20485 0.97736 1.06031 0.91683 1.21670 0.98621 0.93007 0.93685 1.21317 0.92131 1.01241 1.01763 1.20861 1.01816 0.94746 0.88995 1.20900 0.91297 1.12788 0.96223 0.93211 0.80151 0.93919 0.93530 0.91969 0.92576 0.73802 0.83067 0.80896 0.82899 0.80560 0.81426 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.89 13.97 21.65 0.30 -61.58 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.95 45.33 27.74 68.60 1.90 47.23 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.25 -11.03 6.52 99.48 0.65 -10.39 16 7 C -0.24 -13.07 10.47 84.03 0.88 -12.19 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 N -0.76 -34.31 5.41 -343.46 -1.86 -36.17 16 10 C 0.15 4.99 6.37 86.38 0.55 5.54 16 11 C 0.12 3.48 5.79 86.38 0.50 3.98 16 12 N -0.70 -14.04 5.56 -463.05 -2.57 -16.62 16 13 C 0.52 11.83 7.82 87.65 0.69 12.51 16 14 O -0.58 -20.06 16.03 -3.03 -0.05 -20.11 16 15 C -0.07 -0.94 6.30 29.10 0.18 -0.75 16 16 C 0.15 3.55 5.95 45.04 0.27 3.82 16 17 N -0.32 -9.32 12.81 -43.47 -0.56 -9.87 16 18 O -0.12 -3.65 12.06 29.86 0.36 -3.29 16 19 C 0.05 1.18 7.48 22.99 0.17 1.35 16 20 C -0.14 -2.26 10.07 22.34 0.23 -2.03 16 21 C -0.05 -0.52 10.02 22.30 0.22 -0.29 16 22 C -0.15 -1.50 9.97 22.02 0.22 -1.28 16 23 C -0.04 -0.64 10.05 22.24 0.22 -0.42 16 24 C -0.21 -4.53 6.32 -20.22 -0.13 -4.66 16 25 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 26 H 0.37 16.13 5.53 -92.71 -0.51 15.61 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.42 5.11 8.47 -92.71 -0.79 4.33 16 32 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 37 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -84.56 327.90 1.76 -82.80 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.24 Total: 15.05 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 4.47 Total: 2.56 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -4.68 Total: -124.24 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.31 Total: -23.40 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Total: -84.56 1.76 -82.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131002498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.873 kcal (2) G-P(sol) polarization free energy of solvation -84.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds