Wall clock time and date at job start Tue Mar 31 2020 02:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38860 * 119.41080 * 2 1 4 4 C 1.38213 * 119.71210 * 180.02562 * 3 2 1 5 5 C 1.39297 * 118.33521 * 359.97438 * 4 3 2 6 6 O 1.34587 * 133.42759 * 180.34682 * 5 4 3 7 7 C 1.34860 * 110.81792 * 180.13313 * 6 5 4 8 8 C 1.47176 * 125.12939 * 179.81560 * 7 6 5 9 9 O 1.21624 * 119.99961 * 179.69368 * 8 7 6 10 10 N 1.34774 * 119.99772 * 359.68986 * 8 7 6 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.36942 * 120.00106 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99638 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00269 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00220 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00206 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47022 * 90.00194 * 18 16 14 20 20 H 1.48498 * 109.47405 * 210.00872 * 18 16 14 21 21 H 1.48509 * 109.46837 * 330.00429 * 18 16 14 22 22 C 1.35750 * 109.74345 * 359.54403 * 7 6 5 23 23 C 1.40667 * 118.77803 * 0.02562 * 5 4 3 24 24 N 1.31438 * 119.40400 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47261 * 90.00030 * 1 2 3 26 26 H 1.08995 * 109.47444 * 210.00239 * 1 2 3 27 27 H 1.08997 * 109.46836 * 330.00572 * 1 2 3 28 28 H 1.07993 * 120.14518 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.83315 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 31 31 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 32 32 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 33 33 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 34 34 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 35 35 H 0.96994 * 120.00508 * 359.97438 * 13 12 11 36 36 H 0.97000 * 120.00140 * 179.97438 * 17 16 14 37 37 H 1.07993 * 126.93137 * 180.28737 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.2096 0.0000 4 6 3.5710 1.2169 -0.0005 5 6 4.2386 -0.0057 -0.0005 6 8 5.5398 -0.3493 0.0050 7 6 5.6814 -1.6904 -0.0008 8 6 6.9674 -2.4062 -0.0011 9 8 6.9864 -3.6223 -0.0010 10 7 8.1238 -1.7141 -0.0016 11 6 9.4040 -2.4266 -0.0025 12 6 10.5511 -1.4142 -0.0022 13 7 11.8311 -2.1267 -0.0037 14 6 13.0062 -1.4235 -0.0032 15 1 12.9893 -0.3436 -0.0022 16 6 14.2191 -2.0986 -0.0052 17 7 15.3485 -1.4227 -0.0052 18 14 14.2485 -3.9664 -0.0077 19 1 14.2551 -4.4594 -1.4084 20 1 15.4690 -4.4432 0.6908 21 1 13.0443 -4.4813 0.6926 22 6 4.4590 -2.2806 -0.0003 23 6 3.4810 -1.1909 -0.0005 24 7 2.1523 -1.1451 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6417 2.1407 0.0004 29 1 4.1196 2.1472 -0.0001 30 1 8.1087 -0.7442 -0.0021 31 1 9.4720 -3.0525 0.8873 32 1 9.4711 -3.0521 -0.8927 33 1 10.4832 -0.7880 -0.8918 34 1 10.4838 -0.7891 0.8882 35 1 11.8464 -3.0965 -0.0043 36 1 16.1960 -1.8945 -0.0062 37 1 4.2499 -3.3401 0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148548915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:52 Heat of formation + Delta-G solvation = -5.380976 kcal Electronic energy + Delta-G solvation = -21111.204270 eV Core-core repulsion = 17661.586108 eV Total energy + Delta-G solvation = -3449.618162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.86976 -40.95796 -40.07379 -37.57641 -35.72698 -34.39972 -33.63677 -33.37793 -32.01772 -30.23825 -28.54992 -26.06734 -24.75513 -23.51508 -23.23880 -22.91459 -21.97019 -20.09876 -19.55913 -18.71321 -17.84152 -17.34436 -17.00135 -16.67457 -16.63864 -16.40746 -15.67297 -15.39040 -15.28715 -15.04368 -14.78624 -14.65656 -14.32150 -14.13837 -13.51127 -13.45019 -13.27211 -13.14985 -13.02341 -12.74569 -12.65602 -12.09304 -11.84544 -11.73354 -11.71143 -11.04779 -10.58719 -10.44228 -10.05966 -9.73761 -9.37399 -8.05292 -5.41199 -0.73793 -0.01992 0.56601 1.09143 1.39821 1.41932 1.48976 1.76494 1.82402 2.46950 2.55702 2.78337 3.26242 3.26383 3.45156 3.67711 3.73996 3.75401 3.91605 4.10111 4.15561 4.19825 4.43752 4.50751 4.64718 4.74037 4.80550 4.84685 4.88181 5.05489 5.05702 5.07644 5.13928 5.35099 5.67713 5.72073 6.16516 6.20778 6.75909 6.76334 7.03112 7.76653 7.94672 9.15279 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.045707 B = 0.002461 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.454510 B =11374.552128 C =11961.255273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.121 3.879 3 C -0.124 4.124 4 C -0.057 4.057 5 C -0.005 4.005 6 O -0.176 6.176 7 C -0.011 4.011 8 C 0.602 3.398 9 O -0.543 6.543 10 N -0.695 5.695 11 C 0.119 3.881 12 C 0.149 3.851 13 N -0.757 5.757 14 C -0.238 4.238 15 H 0.063 0.937 16 C -0.061 4.061 17 N -0.980 5.980 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.251 1.251 22 C -0.109 4.109 23 C 0.040 3.960 24 N -0.475 5.475 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.198 0.802 29 H 0.180 0.820 30 H 0.420 0.580 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.368 0.632 36 H 0.259 0.741 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.530 6.804 0.014 34.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.083 4.083 5 C -0.055 4.055 6 O -0.077 6.077 7 C -0.063 4.063 8 C 0.388 3.612 9 O -0.422 6.422 10 N -0.346 5.346 11 C -0.004 4.004 12 C 0.022 3.978 13 N -0.404 5.404 14 C -0.369 4.369 15 H 0.081 0.919 16 C -0.253 4.253 17 N -0.630 5.630 18 Si 0.780 3.220 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.176 1.176 22 C -0.131 4.131 23 C -0.089 4.089 24 N -0.187 5.187 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.128 0.872 28 H 0.215 0.785 29 H 0.197 0.803 30 H 0.257 0.743 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.201 0.799 36 H 0.068 0.932 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -33.524 5.512 0.021 33.975 hybrid contribution 1.266 -0.154 -0.014 1.276 sum -32.258 5.358 0.007 32.700 Atomic orbital electron populations 1.20860 0.85536 1.04944 1.04465 1.22122 0.98970 0.87382 0.94080 1.22440 0.92652 1.00951 0.98262 1.21048 0.94199 0.94852 0.98157 1.21010 0.81833 0.97893 1.04793 1.83966 1.25543 1.21933 1.76248 1.21722 0.95268 0.80793 1.08489 1.16652 0.81613 0.85873 0.77093 1.90890 1.86419 1.13077 1.51813 1.45624 1.04673 1.11585 1.72688 1.21442 0.80940 0.95074 1.02987 1.20826 0.83169 0.93763 1.00040 1.42507 1.01671 1.04926 1.91296 1.18993 0.84127 0.91831 1.41956 0.91907 1.25514 0.94747 1.02756 1.02315 1.69871 0.97425 1.36479 1.59180 0.85434 0.77626 0.80682 0.78220 1.20324 1.22143 1.17582 1.22649 0.88573 1.00441 1.01432 1.20670 0.90987 0.92456 1.04758 1.66874 1.06931 1.31699 1.13149 0.88947 0.91122 0.87206 0.78523 0.80258 0.74251 0.90872 0.90739 0.93926 0.94026 0.79865 0.93192 0.80291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.16 71.24 0.72 0.07 16 2 C 0.12 1.68 6.78 42.77 0.29 1.97 16 3 C -0.12 -1.08 9.71 22.41 0.22 -0.86 16 4 C -0.06 -0.69 10.19 22.52 0.23 -0.46 16 5 C 0.00 -0.10 7.42 23.12 0.17 0.07 16 6 O -0.18 -3.92 10.28 -10.81 -0.11 -4.03 16 7 C -0.01 -0.27 7.07 24.04 0.17 -0.10 16 8 C 0.60 16.62 7.80 86.59 0.68 17.30 16 9 O -0.54 -18.29 16.83 -4.11 -0.07 -18.35 16 10 N -0.69 -17.35 5.55 -466.61 -2.59 -19.94 16 11 C 0.12 3.51 5.79 86.38 0.50 4.01 16 12 C 0.15 5.18 6.37 86.38 0.55 5.73 16 13 N -0.76 -34.43 5.41 -343.47 -1.86 -36.28 16 14 C -0.24 -13.36 10.47 84.03 0.88 -12.48 16 15 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 16 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 17 N -0.98 -62.20 13.97 21.65 0.30 -61.89 16 18 Si 0.95 45.15 27.74 68.60 1.90 47.05 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.25 -10.77 6.52 99.48 0.65 -10.12 16 22 C -0.11 -2.69 10.81 23.82 0.26 -2.43 16 23 C 0.04 0.94 7.52 41.70 0.31 1.26 16 24 N -0.47 -10.46 10.32 -173.31 -1.79 -12.25 16 25 H 0.09 0.42 8.14 -2.38 -0.02 0.41 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.04 8.07 -2.39 -0.02 0.02 16 28 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 29 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.42 8.57 8.19 -92.71 -0.76 7.81 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.37 16.06 5.53 -92.71 -0.51 15.55 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.18 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -76.17 327.60 1.03 -75.14 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.21 Total: 19.61 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.45 Total: 10.95 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.93 Total: -130.37 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.18 Total: -22.38 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Total: -76.17 1.03 -75.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148548915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.760 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds