Wall clock time and date at job start Tue Mar 31 2020 02:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46811 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 120.00126 * 3 2 1 6 6 H 1.48498 * 109.47283 * 240.00377 * 3 2 1 7 7 C 1.40025 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.41310 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78670 * 179.72677 * 9 7 2 11 11 C 1.38346 * 119.14896 * 179.74865 * 10 9 7 12 12 C 1.38641 * 118.68160 * 0.51602 * 11 10 9 13 13 C 1.39757 * 119.48743 * 359.72642 * 12 11 10 14 14 N 1.38826 * 119.57571 * 179.97438 * 13 12 11 15 15 C 1.46728 * 111.00291 * 56.07048 * 14 13 12 16 16 C 1.53687 * 109.81512 * 188.69145 * 15 14 13 17 17 N 1.46932 * 107.00791 * 309.48210 * 16 15 14 18 18 C 1.33217 * 129.12540 * 230.56268 * 17 16 15 19 19 O 1.21505 * 123.27940 * 347.61348 * 18 17 16 20 20 O 1.34086 * 113.43373 * 167.63965 * 18 17 16 21 21 C 1.45898 * 109.45635 * 4.96587 * 20 18 17 22 22 C 1.48031 * 122.11270 * 48.61699 * 17 16 15 23 23 H 1.09000 * 111.65453 * 72.92624 * 22 17 16 24 24 C 1.47089 * 110.99374 * 181.81173 * 14 13 12 25 25 N 1.31975 * 120.83678 * 0.02562 * 13 12 11 26 26 H 0.97001 * 119.99761 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.42459 * 359.97438 * 10 9 7 28 28 H 1.08003 * 120.66048 * 180.24333 * 11 10 9 29 29 H 1.07999 * 120.25253 * 179.70553 * 12 11 10 30 30 H 1.09002 * 109.41309 * 308.79761 * 15 14 13 31 31 H 1.09004 * 109.41274 * 68.65771 * 15 14 13 32 32 H 1.09006 * 109.94685 * 68.85437 * 16 15 14 33 33 H 1.09001 * 109.95171 * 190.02141 * 16 15 14 34 34 H 1.08992 * 110.53979 * 243.94099 * 21 20 18 35 35 H 1.08993 * 110.53416 * 121.15519 * 21 20 18 36 36 H 1.08995 * 109.61425 * 289.93219 * 24 14 13 37 37 H 1.09000 * 109.61298 * 50.45263 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6965 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3011 -2.4364 -0.0005 10 6 2.0085 -3.6514 -0.0069 11 6 1.3035 -4.8417 -0.0015 12 6 -0.0821 -4.7944 -0.0009 13 6 -0.7281 -3.5551 0.0000 14 7 -2.1155 -3.5056 0.0001 15 6 -2.6683 -4.2519 1.1360 16 6 -4.1943 -4.3642 0.9925 17 7 -4.7029 -3.0096 0.7375 18 6 -5.6885 -2.3530 1.3475 19 8 -6.4788 -2.8864 2.1007 20 8 -5.7237 -1.0463 1.0488 21 6 -4.7190 -0.7529 0.0323 22 6 -4.1052 -2.1246 -0.2877 23 1 -4.3572 -2.4506 -1.2968 24 6 -2.5932 -2.1151 -0.0423 25 7 -0.0359 -2.4314 -0.0001 26 1 -0.4850 0.8401 0.0004 27 1 3.0886 -3.6554 -0.0122 28 1 1.8222 -5.7890 -0.0023 29 1 -0.6577 -5.7082 -0.0016 30 1 -2.2321 -5.2505 1.1602 31 1 -2.4300 -3.7299 2.0628 32 1 -4.4420 -5.0180 0.1561 33 1 -4.6264 -4.7579 1.9125 34 1 -3.9606 -0.0776 0.4279 35 1 -5.1864 -0.3268 -0.8554 36 1 -2.3799 -1.6259 0.9081 37 1 -2.0946 -1.5814 -0.8514 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149497591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:11 Heat of formation + Delta-G solvation = -6.622108 kcal Electronic energy + Delta-G solvation = -23437.875642 eV Core-core repulsion = 19988.203661 eV Total energy + Delta-G solvation = -3449.671982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60557 -39.08371 -37.17328 -36.95464 -34.44228 -33.41272 -31.88510 -30.54617 -29.69645 -27.83134 -26.32165 -24.80790 -23.56085 -21.86902 -21.21831 -20.99875 -19.68535 -17.68922 -17.27069 -16.97953 -16.37868 -15.96053 -15.17871 -14.98875 -14.79682 -14.51405 -14.26992 -14.06041 -13.59590 -13.38111 -13.28101 -13.06054 -12.36937 -12.13120 -11.91666 -11.52723 -11.28841 -11.24866 -11.13958 -11.02996 -10.81015 -10.59826 -10.56017 -10.38657 -10.15253 -9.60674 -9.05765 -8.69118 -8.17200 -7.78264 -7.15119 -6.57705 -4.66108 2.53051 2.63958 2.84094 2.88416 2.99294 3.01920 3.11439 3.59254 3.83494 4.01281 4.48346 4.64880 4.68603 4.78510 5.15316 5.25547 5.32313 5.38079 5.62321 5.66424 5.78837 5.82524 5.98532 6.01155 6.17865 6.33294 6.47207 6.56240 6.62299 6.66788 6.86219 7.00405 7.25758 7.46980 7.51026 7.64798 7.64900 8.02570 8.15232 8.19035 8.55453 8.83355 9.90855 10.15090 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.005943 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.996363 B = 4710.201931 C = 6174.972819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.429 4.429 8 H 0.083 0.917 9 C 0.276 3.724 10 C -0.292 4.292 11 C -0.044 4.044 12 C -0.320 4.320 13 C 0.321 3.679 14 N -0.483 5.483 15 C 0.049 3.951 16 C 0.155 3.845 17 N -0.627 5.627 18 C 0.648 3.352 19 O -0.536 6.536 20 O -0.334 6.334 21 C 0.046 3.954 22 C 0.088 3.912 23 H 0.107 0.893 24 C 0.078 3.922 25 N -0.509 5.509 26 H 0.271 0.729 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -1.588 -1.741 5.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.151 4.151 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.101 0.899 9 C 0.150 3.850 10 C -0.314 4.314 11 C -0.068 4.068 12 C -0.345 4.345 13 C 0.083 3.917 14 N -0.202 5.202 15 C -0.079 4.079 16 C 0.034 3.966 17 N -0.375 5.375 18 C 0.402 3.598 19 O -0.422 6.422 20 O -0.245 6.245 21 C -0.029 4.029 22 C -0.016 4.016 23 H 0.124 0.876 24 C -0.050 4.050 25 N -0.227 5.227 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.447 -0.976 -1.634 6.722 hybrid contribution 1.314 0.198 0.426 1.395 sum -5.133 -0.777 -1.208 5.331 Atomic orbital electron populations 1.70075 1.07223 1.27624 1.29286 1.26009 0.94939 1.00983 0.93206 0.86383 0.80163 0.80334 0.79939 1.20200 1.19010 1.18926 1.19572 0.94286 0.89340 1.42852 0.89850 1.18294 0.87254 0.91981 0.87508 1.21669 0.98728 0.93453 1.17600 1.20716 0.93567 0.96665 0.95885 1.20667 0.94321 0.95765 1.23727 1.19664 0.87501 0.90698 0.93797 1.58665 1.06412 1.14948 1.40206 1.22584 0.93446 1.00045 0.91859 1.21717 0.92568 0.79785 1.02543 1.48309 1.34689 1.16638 1.37824 1.18235 0.81176 0.80354 0.80061 1.90997 1.43207 1.67863 1.40131 1.87347 1.56195 1.24270 1.56643 1.24295 0.90277 0.97191 0.91138 1.23067 0.96311 0.88603 0.93653 0.87553 1.22251 0.89060 0.88927 1.04781 1.68589 1.08045 1.24702 1.21394 0.91771 0.88373 0.88458 0.88557 0.88491 0.93838 0.90073 0.88709 0.87109 0.87429 0.92322 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -16.77 11.46 55.55 0.64 -16.14 16 2 C 0.07 1.71 5.50 -17.34 -0.10 1.61 16 3 Si 0.91 17.31 29.56 -169.99 -5.02 12.29 16 4 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.43 -10.68 9.14 -37.75 -0.34 -11.02 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.28 7.02 6.55 -85.00 -0.56 6.46 16 10 C -0.29 -6.78 9.83 -38.65 -0.38 -7.16 16 11 C -0.04 -0.93 10.15 -39.39 -0.40 -1.33 16 12 C -0.32 -6.70 9.16 -38.87 -0.36 -7.06 16 13 C 0.32 7.06 6.40 -155.32 -0.99 6.06 16 14 N -0.48 -8.82 4.55 -172.62 -0.78 -9.60 16 15 C 0.05 0.75 5.45 -3.56 -0.02 0.73 16 16 C 0.15 2.08 7.13 -3.45 -0.02 2.06 16 17 N -0.63 -9.44 3.03 -170.10 -0.52 -9.95 16 18 C 0.65 11.14 8.88 53.36 0.47 11.61 16 19 O -0.54 -10.80 17.76 -19.08 -0.34 -11.13 16 20 O -0.33 -5.25 11.11 -38.62 -0.43 -5.68 16 21 C 0.05 0.56 7.86 37.49 0.29 0.85 16 22 C 0.09 1.20 4.12 -66.66 -0.27 0.93 16 23 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 24 C 0.08 1.34 4.13 -3.62 -0.01 1.33 16 25 N -0.51 -12.53 6.12 -10.33 -0.06 -12.60 16 26 H 0.27 5.71 8.29 -40.82 -0.34 5.37 16 27 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 28 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.10 1.79 7.15 -52.49 -0.38 1.41 16 30 H 0.10 1.39 6.57 -51.93 -0.34 1.05 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.20 7.99 -51.93 -0.41 0.79 16 34 H 0.11 1.31 7.64 -51.93 -0.40 0.92 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.15 7.97 -51.93 -0.41 0.74 16 37 H 0.12 2.23 7.58 -51.93 -0.39 1.84 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -29.21 308.91 -8.97 -38.18 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.42 Total: 4.90 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.69 Total: 5.08 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.73 Total: -48.29 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.77 Total: -16.81 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.02 Total: 12.29 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.21 -8.97 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149497591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.560 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds