Wall clock time and date at job start Tue Mar 31 2020 02:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46811 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 120.00126 * 3 2 1 6 6 H 1.48498 * 109.47283 * 240.00377 * 3 2 1 7 7 C 1.40025 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.41310 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78670 * 179.72677 * 9 7 2 11 11 C 1.38346 * 119.14896 * 179.74865 * 10 9 7 12 12 C 1.38641 * 118.68160 * 0.51602 * 11 10 9 13 13 C 1.39757 * 119.48743 * 359.72642 * 12 11 10 14 14 N 1.38826 * 119.57571 * 179.97438 * 13 12 11 15 15 C 1.46728 * 111.00291 * 56.07048 * 14 13 12 16 16 C 1.53687 * 109.81512 * 188.69145 * 15 14 13 17 17 N 1.46932 * 107.00791 * 309.48210 * 16 15 14 18 18 C 1.33217 * 129.12540 * 230.56268 * 17 16 15 19 19 O 1.21505 * 123.27940 * 347.61348 * 18 17 16 20 20 O 1.34086 * 113.43373 * 167.63965 * 18 17 16 21 21 C 1.45898 * 109.45635 * 4.96587 * 20 18 17 22 22 C 1.48031 * 122.11270 * 48.61699 * 17 16 15 23 23 H 1.09000 * 111.65453 * 72.92624 * 22 17 16 24 24 C 1.47089 * 110.99374 * 181.81173 * 14 13 12 25 25 N 1.31975 * 120.83678 * 0.02562 * 13 12 11 26 26 H 0.97001 * 119.99761 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.42459 * 359.97438 * 10 9 7 28 28 H 1.08003 * 120.66048 * 180.24333 * 11 10 9 29 29 H 1.07999 * 120.25253 * 179.70553 * 12 11 10 30 30 H 1.09002 * 109.41309 * 308.79761 * 15 14 13 31 31 H 1.09004 * 109.41274 * 68.65771 * 15 14 13 32 32 H 1.09006 * 109.94685 * 68.85437 * 16 15 14 33 33 H 1.09001 * 109.95171 * 190.02141 * 16 15 14 34 34 H 1.08992 * 110.53979 * 243.94099 * 21 20 18 35 35 H 1.08993 * 110.53416 * 121.15519 * 21 20 18 36 36 H 1.08995 * 109.61425 * 289.93219 * 24 14 13 37 37 H 1.09000 * 109.61298 * 50.45263 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6965 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3011 -2.4364 -0.0005 10 6 2.0085 -3.6514 -0.0069 11 6 1.3035 -4.8417 -0.0015 12 6 -0.0821 -4.7944 -0.0009 13 6 -0.7281 -3.5551 0.0000 14 7 -2.1155 -3.5056 0.0001 15 6 -2.6683 -4.2519 1.1360 16 6 -4.1943 -4.3642 0.9925 17 7 -4.7029 -3.0096 0.7375 18 6 -5.6885 -2.3530 1.3475 19 8 -6.4788 -2.8864 2.1007 20 8 -5.7237 -1.0463 1.0488 21 6 -4.7190 -0.7529 0.0323 22 6 -4.1052 -2.1246 -0.2877 23 1 -4.3572 -2.4506 -1.2968 24 6 -2.5932 -2.1151 -0.0423 25 7 -0.0359 -2.4314 -0.0001 26 1 -0.4850 0.8401 0.0004 27 1 3.0886 -3.6554 -0.0122 28 1 1.8222 -5.7890 -0.0023 29 1 -0.6577 -5.7082 -0.0016 30 1 -2.2321 -5.2505 1.1602 31 1 -2.4300 -3.7299 2.0628 32 1 -4.4420 -5.0180 0.1561 33 1 -4.6264 -4.7579 1.9125 34 1 -3.9606 -0.0776 0.4279 35 1 -5.1864 -0.3268 -0.8554 36 1 -2.3799 -1.6259 0.9081 37 1 -2.0946 -1.5814 -0.8514 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149497591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:10 Heat of formation + Delta-G solvation = -24.508258 kcal Electronic energy + Delta-G solvation = -23438.651244 eV Core-core repulsion = 19988.203661 eV Total energy + Delta-G solvation = -3450.447583 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.84673 -40.66749 -38.65616 -38.29832 -35.92241 -35.03923 -33.15378 -32.21277 -31.31029 -29.14557 -27.89884 -26.29277 -24.84532 -23.34984 -22.69776 -22.51741 -21.06897 -19.38189 -18.51025 -18.24506 -17.83278 -17.36812 -16.58042 -16.52662 -16.35285 -15.93469 -15.67784 -15.50165 -14.89118 -14.81788 -14.58843 -14.45876 -13.92651 -13.72898 -13.24305 -12.85175 -12.81253 -12.73309 -12.62696 -12.50446 -12.41816 -12.13394 -11.80490 -11.74087 -11.71857 -11.27514 -10.62355 -10.05077 -9.85842 -9.52893 -8.81800 -8.29393 -6.48154 0.88409 1.18883 1.37852 1.43336 1.52145 1.53723 1.56088 2.23925 2.46117 2.66112 2.87816 3.35319 3.48234 3.65417 3.91447 3.98089 4.08619 4.18582 4.31909 4.44243 4.50684 4.53938 4.65626 4.73305 4.78996 4.86707 4.88430 4.94576 5.09163 5.25846 5.26814 5.35891 5.64557 5.87532 5.93547 5.97606 6.24418 6.29564 6.46055 6.78923 6.85258 7.05608 8.15610 8.44752 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.005943 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.996363 B = 4710.201931 C = 6174.972819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.034 3.966 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.083 0.917 9 C 0.243 3.757 10 C -0.319 4.319 11 C -0.042 4.042 12 C -0.320 4.320 13 C 0.306 3.694 14 N -0.479 5.479 15 C 0.052 3.948 16 C 0.158 3.842 17 N -0.625 5.625 18 C 0.646 3.354 19 O -0.571 6.571 20 O -0.344 6.344 21 C 0.048 3.952 22 C 0.098 3.902 23 H 0.134 0.866 24 C 0.091 3.909 25 N -0.532 5.532 26 H 0.279 0.721 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.020 0.980 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.027 0.973 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 -1.920 -2.568 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.189 4.189 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.101 0.899 9 C 0.117 3.883 10 C -0.342 4.342 11 C -0.066 4.066 12 C -0.344 4.344 13 C 0.068 3.932 14 N -0.197 5.197 15 C -0.075 4.075 16 C 0.038 3.962 17 N -0.372 5.372 18 C 0.401 3.599 19 O -0.461 6.461 20 O -0.254 6.254 21 C -0.026 4.026 22 C -0.006 4.006 23 H 0.151 0.849 24 C -0.037 4.037 25 N -0.250 5.250 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.131 0.869 31 H 0.039 0.961 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.167 0.833 36 H 0.046 0.954 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.250 -1.322 -2.475 7.774 hybrid contribution 1.563 0.214 0.672 1.715 sum -5.687 -1.108 -1.803 6.068 Atomic orbital electron populations 1.70134 1.08239 1.28855 1.28984 1.26749 0.95844 1.03677 0.92654 0.85314 0.78828 0.76260 0.79610 1.19041 1.19191 1.18709 1.19866 0.94575 0.90511 1.44834 0.89930 1.18731 0.88129 0.93127 0.88344 1.21832 0.99232 0.93881 1.19234 1.21110 0.93908 0.97349 0.94253 1.21042 0.94641 0.96476 1.22270 1.20167 0.89116 0.90741 0.93195 1.58754 1.04528 1.15479 1.40952 1.22650 0.95029 1.00012 0.89800 1.21850 0.90580 0.79496 1.04247 1.48429 1.33996 1.17154 1.37573 1.18313 0.81190 0.80724 0.79707 1.90962 1.44667 1.68757 1.41667 1.87327 1.57039 1.23505 1.57573 1.24582 0.89958 0.96270 0.91786 1.23117 0.93392 0.89565 0.94531 0.84888 1.22018 0.91449 0.88048 1.02230 1.68569 1.07971 1.26218 1.22263 0.91022 0.87883 0.85034 0.85664 0.86858 0.96113 0.87446 0.87739 0.87267 0.83269 0.95444 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.20 11.46 21.84 0.25 -34.95 16 2 C 0.03 1.59 5.50 85.29 0.47 2.06 16 3 Si 0.98 35.82 29.56 68.60 2.03 37.84 16 4 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 7 C -0.47 -24.00 9.14 23.46 0.21 -23.79 16 8 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 9 C 0.24 12.73 6.55 40.19 0.26 12.99 16 10 C -0.32 -15.04 9.83 22.87 0.22 -14.81 16 11 C -0.04 -1.72 10.15 22.39 0.23 -1.49 16 12 C -0.32 -12.89 9.16 22.73 0.21 -12.69 16 13 C 0.31 13.36 6.40 133.40 0.85 14.22 16 14 N -0.48 -16.99 4.55 -700.03 -3.18 -20.17 16 15 C 0.05 1.55 5.45 86.57 0.47 2.02 16 16 C 0.16 3.88 7.13 86.53 0.62 4.50 16 17 N -0.62 -17.64 3.03 -924.47 -2.80 -20.44 16 18 C 0.65 21.40 8.88 130.03 1.15 22.55 16 19 O -0.57 -22.62 17.76 19.64 0.35 -22.27 16 20 O -0.34 -10.31 11.11 -50.28 -0.56 -10.87 16 21 C 0.05 1.07 7.86 72.20 0.57 1.63 16 22 C 0.10 2.48 4.12 44.98 0.19 2.66 16 23 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 24 C 0.09 3.11 4.13 86.33 0.36 3.47 16 25 N -0.53 -26.75 6.12 -186.59 -1.14 -27.90 16 26 H 0.28 11.88 8.29 -92.71 -0.77 11.11 16 27 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.13 4.25 7.15 -2.91 -0.02 4.23 16 30 H 0.11 2.97 6.57 -2.39 -0.02 2.96 16 31 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.10 2.42 7.99 -2.39 -0.02 2.40 16 34 H 0.11 2.48 7.64 -2.39 -0.02 2.46 16 35 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 1.11 7.97 -2.39 -0.02 1.09 16 37 H 0.09 3.65 7.58 -2.39 -0.02 3.63 16 Total: -1.00 -65.05 308.91 1.85 -63.20 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 1.09 Total: 22.24 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.81 Total: 13.32 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -6.87 Total: -103.46 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.21 Total: -33.14 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.84 kcal Total: -65.05 1.85 -63.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149497591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.689 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds