Wall clock time and date at job start Tue Mar 31 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31084 * 1 3 3 Si 1.86804 * 119.99639 * 2 1 4 4 H 1.48500 * 109.47470 * 270.00086 * 3 2 1 5 5 H 1.48503 * 109.46752 * 30.00284 * 3 2 1 6 6 H 1.48494 * 109.47016 * 149.99751 * 3 2 1 7 7 C 1.39670 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.40906 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.38967 * 126.93566 * 338.77808 * 9 7 2 11 11 N 1.35655 * 109.23909 * 179.97438 * 10 9 7 12 12 H 0.97004 * 124.69541 * 180.02562 * 11 10 9 13 13 C 1.38134 * 110.60564 * 359.97438 * 11 10 9 14 14 C 1.39209 * 132.74558 * 179.97438 * 13 11 10 15 15 C 1.37939 * 120.13537 * 180.02562 * 14 13 11 16 16 C 1.38491 * 120.70559 * 359.70046 * 15 14 13 17 17 C 1.38682 * 120.15484 * 0.57418 * 16 15 14 18 18 N 1.39407 * 120.23029 * 179.72913 * 17 16 15 19 19 C 1.46505 * 120.00243 * 354.54550 * 18 17 16 20 20 H 1.09000 * 109.46469 * 34.99864 * 19 18 17 21 21 C 1.52998 * 109.46890 * 275.00427 * 19 18 17 22 22 O 1.42905 * 109.47137 * 294.99256 * 21 19 18 23 23 C 1.50692 * 109.47288 * 154.99884 * 19 18 17 24 24 N 1.34776 * 119.99931 * 179.97438 * 23 19 18 25 25 O 1.21280 * 120.00431 * 0.02562 * 23 19 18 26 26 C 1.39806 * 119.54374 * 359.45597 * 17 16 15 27 27 H 0.96999 * 120.00189 * 0.02562 * 1 2 3 28 28 H 1.08000 * 125.37852 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.93165 * 0.02562 * 14 13 11 30 30 H 1.08006 * 119.64441 * 180.02562 * 15 14 13 31 31 H 1.08005 * 119.92143 * 180.28262 * 16 15 14 32 32 H 0.97005 * 120.00557 * 174.54705 * 18 17 16 33 33 H 1.09002 * 109.46898 * 175.00027 * 21 19 18 34 34 H 1.08997 * 109.47705 * 54.99388 * 21 19 18 35 35 H 0.96694 * 113.99994 * 180.02562 * 22 21 19 36 36 H 0.97005 * 120.00046 * 0.02562 * 24 23 19 37 37 H 0.96998 * 120.00171 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.4923 2.0466 -1.4000 5 1 1.4421 2.6526 0.7001 6 1 3.5422 1.4403 0.7001 7 6 2.0093 -1.2095 -0.0005 8 1 3.0893 -1.2095 -0.0010 9 6 1.3048 -2.4299 -0.0016 10 6 -0.0096 -2.6357 0.3998 11 7 -0.3229 -3.9469 0.2490 12 1 -1.1852 -4.3366 0.4622 13 6 0.7557 -4.6500 -0.2513 14 6 0.9412 -5.9911 -0.5753 15 6 2.1552 -6.4231 -1.0678 16 6 3.2004 -5.5334 -1.2524 17 6 3.0401 -4.1939 -0.9311 18 7 4.0930 -3.2981 -1.1109 19 6 5.4093 -3.7887 -1.5269 20 1 5.2845 -4.6307 -2.2078 21 6 6.1974 -4.2406 -0.2959 22 8 6.4616 -3.1128 0.5410 23 6 6.1591 -2.6842 -2.2260 24 7 7.4016 -2.9072 -2.6982 25 8 5.6450 -1.5943 -2.3629 26 6 1.8134 -3.7470 -0.4309 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6765 -1.8722 0.7722 29 1 0.1330 -6.6948 -0.4409 30 1 2.2903 -7.4653 -1.3170 31 1 4.1441 -5.8846 -1.6431 32 1 3.9541 -2.3498 -0.9607 33 1 7.1402 -4.6872 -0.6120 34 1 5.6148 -4.9761 0.2588 35 1 6.9596 -3.3256 1.3421 36 1 7.8130 -3.7788 -2.5884 37 1 7.8844 -2.1962 -3.1479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169331909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:35 Heat of formation + Delta-G solvation = -28.368317 kcal Electronic energy + Delta-G solvation = -23174.261817 eV Core-core repulsion = 19723.646849 eV Total energy + Delta-G solvation = -3450.614968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94338 -39.33593 -36.98879 -36.01341 -34.17901 -33.63505 -33.08030 -30.53912 -28.63623 -27.87409 -26.83396 -24.53461 -23.77903 -21.32794 -20.93672 -19.60271 -19.34580 -18.02130 -17.50973 -17.10542 -16.19996 -15.67230 -15.29407 -15.23169 -14.91872 -14.41525 -14.27485 -14.06212 -13.61524 -13.17703 -13.04877 -12.54208 -12.46183 -12.32868 -11.76297 -11.31614 -11.13633 -11.02623 -10.82619 -10.64573 -10.45906 -10.10129 -9.75633 -9.67010 -9.63034 -9.61847 -9.25425 -8.96971 -7.36602 -6.95042 -6.36810 -5.97962 -3.87558 2.49764 2.76934 2.80423 3.23754 3.30228 3.38161 3.43169 4.10083 4.23822 4.29891 4.36067 4.68485 4.88105 4.95264 5.18503 5.24519 5.41237 5.67066 5.70155 5.82160 6.05754 6.18610 6.52037 6.68166 6.80072 6.90119 7.14992 7.21675 7.32253 7.39219 7.54192 7.58089 7.68811 7.91488 8.02365 8.28698 8.36134 8.48869 8.70433 8.83252 9.14707 9.26360 9.33149 10.64732 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.008309 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.937725 B = 3369.211659 C = 5403.061196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.426 4.426 8 H 0.070 0.930 9 C 0.039 3.961 10 C -0.094 4.094 11 N -0.586 5.586 12 H 0.393 0.607 13 C 0.118 3.882 14 C -0.206 4.206 15 C -0.067 4.067 16 C -0.286 4.286 17 C 0.280 3.720 18 N -0.718 5.718 19 C 0.136 3.864 20 H 0.114 0.886 21 C 0.064 3.936 22 O -0.558 6.558 23 C 0.520 3.480 24 N -0.857 5.857 25 O -0.520 6.520 26 C -0.183 4.183 27 H 0.271 0.729 28 H 0.173 0.827 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.421 0.579 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.376 0.624 36 H 0.397 0.603 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.666 -10.078 -1.552 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.459 4.459 8 H 0.088 0.912 9 C 0.034 3.966 10 C -0.218 4.218 11 N -0.186 5.186 12 H 0.226 0.774 13 C 0.005 3.995 14 C -0.230 4.230 15 C -0.087 4.087 16 C -0.312 4.312 17 C 0.176 3.824 18 N -0.353 5.353 19 C 0.025 3.975 20 H 0.131 0.869 21 C -0.016 4.016 22 O -0.362 6.362 23 C 0.304 3.696 24 N -0.422 5.422 25 O -0.393 6.393 26 C -0.194 4.194 27 H 0.081 0.919 28 H 0.190 0.810 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.223 0.777 36 H 0.225 0.775 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 10.671 -8.899 -2.018 14.040 hybrid contribution 0.683 0.405 0.314 0.854 sum 11.354 -8.494 -1.704 14.281 Atomic orbital electron populations 1.69703 1.06948 1.27764 1.42103 1.25572 0.94823 1.00374 0.93905 0.86294 0.80099 0.81261 0.78924 1.19909 1.20841 1.18926 1.18597 0.93379 0.89146 1.44788 0.91192 1.17911 0.91891 0.89401 0.97417 1.22568 1.00248 0.82511 1.16475 1.41456 1.11185 1.08611 1.57308 0.77378 1.17897 0.88231 0.92280 1.01109 1.19541 0.98304 0.92288 1.12837 1.20059 0.92363 0.97328 0.98999 1.19895 1.00354 0.92098 1.18812 1.17172 0.85623 0.88646 0.90955 1.44559 1.05306 1.10691 1.74757 1.20713 0.85954 0.96024 0.94822 0.86853 1.22702 0.97448 0.89079 0.92374 1.86628 1.78644 1.33658 1.37302 1.20575 0.81679 0.89570 0.77792 1.43747 1.17691 1.17727 1.63007 1.90799 1.67382 1.25139 1.55989 1.18948 0.92658 0.96204 1.11541 0.91903 0.80972 0.88617 0.87886 0.88172 0.73550 0.93461 0.91685 0.77740 0.77481 0.76872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.00 10.78 55.54 0.60 -22.40 16 2 C 0.06 1.75 5.47 -17.34 -0.09 1.66 16 3 Si 0.91 21.45 29.56 -169.99 -5.02 16.43 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.43 -12.12 8.75 -38.04 -0.33 -12.46 16 8 H 0.07 1.99 5.78 -52.49 -0.30 1.69 16 9 C 0.04 1.09 5.99 -104.81 -0.63 0.46 16 10 C -0.09 -2.47 10.78 -15.59 -0.17 -2.64 16 11 N -0.59 -13.21 5.99 -9.80 -0.06 -13.27 16 12 H 0.39 7.28 8.96 -40.82 -0.37 6.91 16 13 C 0.12 2.74 7.23 -83.91 -0.61 2.13 16 14 C -0.21 -4.09 10.07 -39.33 -0.40 -4.48 16 15 C -0.07 -1.22 10.00 -39.60 -0.40 -1.62 16 16 C -0.29 -5.35 9.24 -39.32 -0.36 -5.71 16 17 C 0.28 6.18 6.65 -83.66 -0.56 5.63 16 18 N -0.72 -15.00 5.06 -53.18 -0.27 -15.27 16 19 C 0.14 2.08 2.58 -69.08 -0.18 1.90 16 20 H 0.11 1.44 6.27 -51.93 -0.33 1.12 16 21 C 0.06 0.79 6.73 37.16 0.25 1.04 16 22 O -0.56 -7.98 13.09 -35.23 -0.46 -8.44 16 23 C 0.52 8.23 7.01 -10.99 -0.08 8.15 16 24 N -0.86 -8.41 8.78 31.22 0.27 -8.13 16 25 O -0.52 -11.14 16.67 5.56 0.09 -11.05 16 26 C -0.18 -4.64 6.27 -104.75 -0.66 -5.30 16 27 H 0.27 6.93 8.30 -40.82 -0.34 6.59 16 28 H 0.17 4.64 6.34 -52.49 -0.33 4.30 16 29 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.10 1.51 8.06 -52.48 -0.42 1.08 16 31 H 0.10 1.52 6.14 -52.48 -0.32 1.20 16 32 H 0.42 10.27 4.85 -40.82 -0.20 10.07 16 33 H 0.05 0.37 7.71 -51.93 -0.40 -0.03 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.38 3.48 9.12 45.56 0.42 3.90 16 36 H 0.40 2.38 8.34 -40.82 -0.34 2.04 16 37 H 0.40 3.53 8.93 -40.82 -0.36 3.16 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -35.74 313.01 -7.27 -43.02 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -2.94 Total: 25.64 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -4.20 Total: -11.24 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.54 Total: -59.07 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.37 Total: -19.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.74 -7.27 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169331909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.649 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds