Wall clock time and date at job start Tue Mar 31 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31084 * 1 3 3 Si 1.86804 * 119.99639 * 2 1 4 4 H 1.48500 * 109.47470 * 270.00086 * 3 2 1 5 5 H 1.48503 * 109.46752 * 30.00284 * 3 2 1 6 6 H 1.48494 * 109.47016 * 149.99751 * 3 2 1 7 7 C 1.39670 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.40906 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.38967 * 126.93566 * 338.77808 * 9 7 2 11 11 N 1.35655 * 109.23909 * 179.97438 * 10 9 7 12 12 H 0.97004 * 124.69541 * 180.02562 * 11 10 9 13 13 C 1.38134 * 110.60564 * 359.97438 * 11 10 9 14 14 C 1.39209 * 132.74558 * 179.97438 * 13 11 10 15 15 C 1.37939 * 120.13537 * 180.02562 * 14 13 11 16 16 C 1.38491 * 120.70559 * 359.70046 * 15 14 13 17 17 C 1.38682 * 120.15484 * 0.57418 * 16 15 14 18 18 N 1.39407 * 120.23029 * 179.72913 * 17 16 15 19 19 C 1.46505 * 120.00243 * 354.54550 * 18 17 16 20 20 H 1.09000 * 109.46469 * 34.99864 * 19 18 17 21 21 C 1.52998 * 109.46890 * 275.00427 * 19 18 17 22 22 O 1.42905 * 109.47137 * 294.99256 * 21 19 18 23 23 C 1.50692 * 109.47288 * 154.99884 * 19 18 17 24 24 N 1.34776 * 119.99931 * 179.97438 * 23 19 18 25 25 O 1.21280 * 120.00431 * 0.02562 * 23 19 18 26 26 C 1.39806 * 119.54374 * 359.45597 * 17 16 15 27 27 H 0.96999 * 120.00189 * 0.02562 * 1 2 3 28 28 H 1.08000 * 125.37852 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.93165 * 0.02562 * 14 13 11 30 30 H 1.08006 * 119.64441 * 180.02562 * 15 14 13 31 31 H 1.08005 * 119.92143 * 180.28262 * 16 15 14 32 32 H 0.97005 * 120.00557 * 174.54705 * 18 17 16 33 33 H 1.09002 * 109.46898 * 175.00027 * 21 19 18 34 34 H 1.08997 * 109.47705 * 54.99388 * 21 19 18 35 35 H 0.96694 * 113.99994 * 180.02562 * 22 21 19 36 36 H 0.97005 * 120.00046 * 0.02562 * 24 23 19 37 37 H 0.96998 * 120.00171 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.4923 2.0466 -1.4000 5 1 1.4421 2.6526 0.7001 6 1 3.5422 1.4403 0.7001 7 6 2.0093 -1.2095 -0.0005 8 1 3.0893 -1.2095 -0.0010 9 6 1.3048 -2.4299 -0.0016 10 6 -0.0096 -2.6357 0.3998 11 7 -0.3229 -3.9469 0.2490 12 1 -1.1852 -4.3366 0.4622 13 6 0.7557 -4.6500 -0.2513 14 6 0.9412 -5.9911 -0.5753 15 6 2.1552 -6.4231 -1.0678 16 6 3.2004 -5.5334 -1.2524 17 6 3.0401 -4.1939 -0.9311 18 7 4.0930 -3.2981 -1.1109 19 6 5.4093 -3.7887 -1.5269 20 1 5.2845 -4.6307 -2.2078 21 6 6.1974 -4.2406 -0.2959 22 8 6.4616 -3.1128 0.5410 23 6 6.1591 -2.6842 -2.2260 24 7 7.4016 -2.9072 -2.6982 25 8 5.6450 -1.5943 -2.3629 26 6 1.8134 -3.7470 -0.4309 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6765 -1.8722 0.7722 29 1 0.1330 -6.6948 -0.4409 30 1 2.2903 -7.4653 -1.3170 31 1 4.1441 -5.8846 -1.6431 32 1 3.9541 -2.3498 -0.9607 33 1 7.1402 -4.6872 -0.6120 34 1 5.6148 -4.9761 0.2588 35 1 6.9596 -3.3256 1.3421 36 1 7.8130 -3.7788 -2.5884 37 1 7.8844 -2.1962 -3.1479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169331909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:34 Heat of formation + Delta-G solvation = -60.103875 kcal Electronic energy + Delta-G solvation = -23175.637974 eV Core-core repulsion = 19723.646849 eV Total energy + Delta-G solvation = -3451.991125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46467 -40.76466 -38.30101 -37.36305 -35.82497 -34.92124 -34.70573 -32.12177 -30.23348 -29.52514 -28.41660 -26.39599 -24.94421 -22.82912 -22.55254 -21.27667 -20.85815 -19.43641 -18.59952 -18.37790 -17.69224 -17.41045 -16.99273 -16.47853 -16.19039 -16.07031 -15.72614 -15.37229 -14.98288 -14.76853 -14.46813 -14.37131 -14.05261 -13.72414 -13.19933 -13.01973 -12.97469 -12.87593 -12.44994 -12.25196 -12.02758 -11.66183 -11.51885 -11.19849 -11.09849 -10.82466 -10.68262 -10.63104 -9.19007 -8.65453 -8.39789 -7.68509 -5.93923 0.87194 1.16009 1.33412 1.36897 1.47576 1.60628 2.27866 2.32230 2.36299 2.80009 2.99175 3.23980 3.36263 3.67196 3.92850 4.13330 4.29556 4.41182 4.43288 4.60801 4.72503 4.76028 4.93798 5.06453 5.24798 5.34740 5.43976 5.62267 5.82803 5.89067 6.00374 6.09321 6.15870 6.40545 6.56635 6.78745 6.88512 6.96691 6.98146 7.17801 7.27476 7.35273 7.48175 8.62511 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.008309 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.937725 B = 3369.211659 C = 5403.061196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.451 4.451 8 H 0.056 0.944 9 C -0.004 4.004 10 C -0.106 4.106 11 N -0.584 5.584 12 H 0.410 0.590 13 C 0.112 3.888 14 C -0.219 4.219 15 C -0.051 4.051 16 C -0.273 4.273 17 C 0.260 3.740 18 N -0.733 5.733 19 C 0.125 3.875 20 H 0.145 0.855 21 C 0.067 3.933 22 O -0.592 6.592 23 C 0.516 3.484 24 N -0.824 5.824 25 O -0.589 6.589 26 C -0.230 4.230 27 H 0.275 0.725 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.400 0.600 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.395 0.605 36 H 0.421 0.579 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.979 -13.367 -2.409 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.195 1.195 7 C -0.485 4.485 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.230 4.230 11 N -0.187 5.187 12 H 0.246 0.754 13 C 0.000 4.000 14 C -0.242 4.242 15 C -0.070 4.070 16 C -0.298 4.298 17 C 0.156 3.844 18 N -0.363 5.363 19 C 0.016 3.984 20 H 0.162 0.838 21 C -0.012 4.012 22 O -0.400 6.400 23 C 0.301 3.699 24 N -0.389 5.389 25 O -0.469 6.469 26 C -0.240 4.240 27 H 0.085 0.915 28 H 0.175 0.825 29 H 0.143 0.857 30 H 0.171 0.829 31 H 0.161 0.839 32 H 0.238 0.762 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.253 0.747 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 13.058 -12.284 -2.873 18.156 hybrid contribution 0.118 1.189 0.513 1.301 sum 13.176 -11.095 -2.359 17.386 Atomic orbital electron populations 1.69777 1.07738 1.28569 1.43055 1.26275 0.95712 1.02988 0.93746 0.85389 0.78758 0.78070 0.78503 1.20377 1.18793 1.19546 1.18728 0.92903 0.90525 1.46311 0.92610 1.18288 0.93051 0.90777 0.98806 1.22296 0.99788 0.83939 1.16966 1.41257 1.12190 1.07384 1.57877 0.75435 1.18412 0.87575 0.93570 1.00470 1.19965 1.00297 0.91009 1.12948 1.20690 0.90897 0.99543 0.95904 1.20406 1.02363 0.90330 1.16685 1.17527 0.85177 0.90350 0.91389 1.44736 1.07296 1.09587 1.74726 1.21211 0.83921 0.96437 0.96852 0.83753 1.22776 0.99476 0.88175 0.90755 1.86592 1.79375 1.35297 1.38778 1.20809 0.82943 0.88719 0.77474 1.43437 1.15572 1.19160 1.60733 1.90780 1.69354 1.27753 1.58973 1.19324 0.95211 0.95574 1.13871 0.91460 0.82525 0.85672 0.82894 0.83905 0.76175 0.87803 0.92071 0.75502 0.74717 0.75913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.89 10.78 21.79 0.23 -49.65 16 2 C 0.02 1.17 5.47 85.15 0.47 1.63 16 3 Si 0.97 46.39 29.56 68.60 2.03 48.42 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.45 -27.43 8.75 23.27 0.20 -27.23 16 8 H 0.06 3.44 5.78 -2.91 -0.02 3.42 16 9 C 0.00 -0.21 5.99 -19.99 -0.12 -0.33 16 10 C -0.11 -5.85 10.78 84.28 0.91 -4.94 16 11 N -0.58 -27.05 5.99 -184.91 -1.11 -28.16 16 12 H 0.41 15.41 8.96 -92.71 -0.83 14.58 16 13 C 0.11 5.18 7.23 38.87 0.28 5.46 16 14 C -0.22 -7.99 10.07 22.43 0.23 -7.77 16 15 C -0.05 -1.58 10.00 22.26 0.22 -1.36 16 16 C -0.27 -9.11 9.24 22.44 0.21 -8.90 16 17 C 0.26 11.36 6.65 38.42 0.26 11.62 16 18 N -0.73 -30.83 5.06 -322.17 -1.63 -32.46 16 19 C 0.13 3.54 2.58 44.24 0.11 3.65 16 20 H 0.15 3.03 6.27 -2.39 -0.01 3.02 16 21 C 0.07 1.43 6.73 71.98 0.48 1.91 16 22 O -0.59 -16.17 13.09 -148.98 -1.95 -18.12 16 23 C 0.52 15.71 7.01 87.65 0.61 16.32 16 24 N -0.82 -13.71 8.78 -173.54 -1.52 -15.24 16 25 O -0.59 -26.03 16.67 -3.03 -0.05 -26.08 16 26 C -0.23 -11.96 6.27 -19.95 -0.13 -12.08 16 27 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 28 H 0.16 9.04 6.34 -2.91 -0.02 9.02 16 29 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.14 3.47 6.14 -2.91 -0.02 3.45 16 32 H 0.40 20.55 4.85 -92.70 -0.45 20.10 16 33 H 0.10 1.03 7.71 -2.39 -0.02 1.01 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.40 6.68 9.12 -74.06 -0.68 6.00 16 36 H 0.42 3.06 8.34 -92.70 -0.77 2.28 16 37 H 0.41 6.19 8.93 -92.71 -0.83 5.36 16 Total: -1.00 -86.00 313.01 -2.62 -88.62 By element: Atomic # 1 Polarization: 57.04 SS G_CDS: -2.36 Total: 54.69 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 3.74 Total: -22.02 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -4.03 Total: -125.50 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -2.00 Total: -44.20 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -86.00 -2.62 -88.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169331909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.513 kcal (2) G-P(sol) polarization free energy of solvation -85.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds