Wall clock time and date at job start Tue Mar 31 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86800 * 120.00319 * 2 1 4 4 H 1.48496 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46978 * 300.00188 * 3 2 1 6 6 H 1.48499 * 109.46916 * 59.99937 * 3 2 1 7 7 C 1.39681 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.40906 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.38959 * 126.93901 * 338.01863 * 9 7 2 11 11 N 1.35656 * 109.24021 * 180.02562 * 10 9 7 12 12 H 0.97005 * 124.69291 * 180.02562 * 11 10 9 13 13 C 1.38129 * 110.60767 * 0.02562 * 11 10 9 14 14 C 1.39203 * 132.74660 * 180.02562 * 13 11 10 15 15 C 1.37945 * 120.13868 * 179.97438 * 14 13 11 16 16 C 1.38496 * 120.70262 * 0.02562 * 15 14 13 17 17 C 1.38691 * 120.15606 * 359.97438 * 16 15 14 18 18 N 1.39400 * 120.22828 * 179.97438 * 17 16 15 19 19 C 1.46495 * 120.00293 * 354.19887 * 18 17 16 20 20 H 1.08997 * 109.47346 * 324.99432 * 19 18 17 21 21 C 1.53003 * 109.47431 * 84.99570 * 19 18 17 22 22 O 1.42902 * 109.46989 * 64.99911 * 21 19 18 23 23 C 1.50703 * 109.47453 * 204.99335 * 19 18 17 24 24 N 1.34768 * 120.00311 * 179.97438 * 23 19 18 25 25 O 1.21289 * 119.99349 * 0.02562 * 23 19 18 26 26 C 1.39816 * 119.54126 * 359.97438 * 17 16 15 27 27 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 28 28 H 1.08005 * 125.37768 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.93153 * 0.02562 * 14 13 11 30 30 H 1.07996 * 119.65226 * 179.72481 * 15 14 13 31 31 H 1.07995 * 119.92145 * 180.02562 * 16 15 14 32 32 H 0.97004 * 119.99860 * 174.18938 * 18 17 16 33 33 H 1.08998 * 109.47319 * 185.00298 * 21 19 18 34 34 H 1.08999 * 109.47000 * 305.00231 * 21 19 18 35 35 H 0.96701 * 113.99651 * 180.02562 * 22 21 19 36 36 H 0.97000 * 119.99791 * 359.97438 * 24 23 19 37 37 H 0.97005 * 120.00426 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.7049 1.3463 -0.0006 5 1 1.8862 2.3964 -1.2125 6 1 1.8862 2.3964 1.2125 7 6 2.0092 -1.2097 -0.0005 8 1 3.0893 -1.2097 -0.0010 9 6 1.3046 -2.4299 -0.0016 10 6 -0.0050 -2.6384 0.4134 11 7 -0.3198 -3.9488 0.2586 12 1 -1.1797 -4.3399 0.4794 13 6 0.7534 -4.6490 -0.2569 14 6 0.9353 -5.9880 -0.5911 15 6 2.1438 -6.4170 -1.0995 16 6 3.1892 -5.5275 -1.2837 17 6 3.0307 -4.1888 -0.9576 18 7 4.0821 -3.2923 -1.1419 19 6 5.3977 -3.7823 -1.5605 20 1 5.5826 -4.7573 -1.1097 21 6 5.4332 -3.9101 -3.0847 22 8 5.3072 -2.6145 -3.6744 23 6 6.4608 -2.8124 -1.1129 24 7 7.7568 -3.0585 -1.3886 25 8 6.1500 -1.8106 -0.5038 26 6 1.8090 -3.7447 -0.4428 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6676 -1.8773 0.7985 29 1 0.1282 -6.6924 -0.4530 30 1 2.2778 -7.4585 -1.3520 31 1 4.1299 -5.8770 -1.6829 32 1 3.9426 -2.3440 -0.9932 33 1 6.3790 -4.3578 -3.3899 34 1 4.6088 -4.5416 -3.4157 35 1 5.3214 -2.6194 -4.6413 36 1 8.0054 -3.8603 -1.8747 37 1 8.4411 -2.4344 -1.1002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169331911.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:37 Heat of formation + Delta-G solvation = -29.101491 kcal Electronic energy + Delta-G solvation = -23174.351422 eV Core-core repulsion = 19723.704661 eV Total energy + Delta-G solvation = -3450.646761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.94358 -39.33304 -37.00307 -36.00095 -34.17700 -33.63041 -33.07523 -30.54084 -28.62481 -27.88756 -26.84217 -24.54230 -23.74024 -21.31952 -20.92414 -19.63783 -19.33994 -18.02095 -17.50134 -17.10920 -16.18281 -15.67254 -15.31402 -15.19688 -14.91312 -14.41968 -14.28574 -14.02155 -13.62876 -13.15916 -13.05249 -12.57730 -12.43794 -12.33784 -11.78556 -11.29281 -11.14246 -11.04866 -10.77619 -10.67445 -10.45304 -10.08512 -9.71654 -9.69350 -9.64010 -9.60797 -9.23528 -8.97368 -7.36392 -6.95174 -6.36655 -5.97853 -3.87400 2.49324 2.77215 2.80676 3.21198 3.30075 3.42875 3.44137 4.10132 4.24435 4.30138 4.36180 4.68273 4.88383 4.95369 5.17871 5.24878 5.43074 5.65397 5.70836 5.81990 6.04552 6.18424 6.51969 6.68069 6.80582 6.90001 7.15159 7.21798 7.32582 7.40412 7.53928 7.58562 7.68213 7.90978 8.02960 8.29294 8.36579 8.49862 8.70698 8.83732 9.15121 9.26724 9.33296 10.65164 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.008298 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.880482 B = 3373.648127 C = 5404.049811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.427 4.427 8 H 0.073 0.927 9 C 0.039 3.961 10 C -0.093 4.093 11 N -0.586 5.586 12 H 0.393 0.607 13 C 0.118 3.882 14 C -0.206 4.206 15 C -0.068 4.068 16 C -0.285 4.285 17 C 0.279 3.721 18 N -0.718 5.718 19 C 0.138 3.862 20 H 0.113 0.887 21 C 0.062 3.938 22 O -0.558 6.558 23 C 0.520 3.480 24 N -0.857 5.857 25 O -0.519 6.519 26 C -0.183 4.183 27 H 0.270 0.730 28 H 0.173 0.827 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.422 0.578 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.376 0.624 36 H 0.397 0.603 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.540 -9.604 -5.836 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.147 4.147 3 Si 0.730 3.270 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.461 4.461 8 H 0.091 0.909 9 C 0.034 3.966 10 C -0.217 4.217 11 N -0.186 5.186 12 H 0.226 0.774 13 C 0.005 3.995 14 C -0.229 4.229 15 C -0.088 4.088 16 C -0.311 4.311 17 C 0.176 3.824 18 N -0.353 5.353 19 C 0.026 3.974 20 H 0.131 0.869 21 C -0.018 4.018 22 O -0.362 6.362 23 C 0.303 3.697 24 N -0.422 5.422 25 O -0.392 6.392 26 C -0.193 4.193 27 H 0.080 0.920 28 H 0.189 0.811 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.223 0.777 36 H 0.225 0.775 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 9.966 -8.607 -4.787 14.011 hybrid contribution 0.366 0.537 -0.713 0.965 sum 10.332 -8.069 -5.500 14.217 Atomic orbital electron populations 1.69723 1.06959 1.27651 1.42230 1.25577 0.94807 1.00368 0.93911 0.86286 0.81185 0.81667 0.77853 1.18338 1.20514 1.20498 1.18689 0.93589 0.89109 1.44697 0.90893 1.17919 0.91946 0.89460 0.97298 1.22541 1.00436 0.82545 1.16167 1.41450 1.11582 1.08710 1.56818 0.77376 1.17891 0.88324 0.92326 1.00991 1.19543 0.98532 0.92366 1.12476 1.20064 0.92427 0.97325 0.98995 1.19913 1.00130 0.92068 1.18968 1.17179 0.85796 0.88570 0.90895 1.44549 1.05393 1.10630 1.74718 1.20699 0.85573 0.97696 0.93392 0.86936 1.22741 1.00020 0.85932 0.93107 1.86629 1.96990 1.28193 1.24424 1.20579 0.83712 0.86890 0.78474 1.43743 1.07907 1.28529 1.61997 1.90808 1.81378 1.27649 1.39387 1.18962 0.92866 0.96266 1.11243 0.91985 0.81060 0.88616 0.87888 0.88172 0.73535 0.93488 0.91560 0.77749 0.77492 0.76870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.00 10.81 55.54 0.60 -22.40 16 2 C 0.06 1.75 5.47 -17.33 -0.09 1.66 16 3 Si 0.90 21.37 29.56 -169.99 -5.02 16.35 16 4 H -0.26 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.43 -12.21 8.73 -38.03 -0.33 -12.54 16 8 H 0.07 2.10 5.82 -52.48 -0.31 1.80 16 9 C 0.04 1.09 5.98 -104.81 -0.63 0.46 16 10 C -0.09 -2.44 10.77 -15.59 -0.17 -2.61 16 11 N -0.59 -13.22 5.99 -9.80 -0.06 -13.28 16 12 H 0.39 7.28 8.96 -40.82 -0.37 6.92 16 13 C 0.12 2.74 7.23 -83.92 -0.61 2.13 16 14 C -0.21 -4.07 10.07 -39.33 -0.40 -4.47 16 15 C -0.07 -1.23 10.00 -39.59 -0.40 -1.62 16 16 C -0.29 -5.31 8.67 -39.32 -0.34 -5.65 16 17 C 0.28 6.17 6.65 -83.66 -0.56 5.61 16 18 N -0.72 -14.99 5.06 -53.18 -0.27 -15.26 16 19 C 0.14 2.10 2.46 -69.08 -0.17 1.93 16 20 H 0.11 1.44 6.76 -51.93 -0.35 1.09 16 21 C 0.06 0.76 6.51 37.16 0.24 1.00 16 22 O -0.56 -7.96 13.09 -35.23 -0.46 -8.42 16 23 C 0.52 8.24 7.01 -10.99 -0.08 8.16 16 24 N -0.86 -8.43 8.78 31.22 0.27 -8.16 16 25 O -0.52 -11.16 16.67 5.55 0.09 -11.07 16 26 C -0.18 -4.64 6.27 -104.75 -0.66 -5.30 16 27 H 0.27 6.89 8.30 -40.82 -0.34 6.55 16 28 H 0.17 4.62 6.38 -52.48 -0.33 4.28 16 29 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.10 1.51 5.92 -52.49 -0.31 1.20 16 32 H 0.42 10.28 4.87 -40.82 -0.20 10.08 16 33 H 0.05 0.37 7.71 -51.93 -0.40 -0.03 16 34 H 0.07 0.84 7.28 -51.93 -0.38 0.47 16 35 H 0.38 3.45 9.12 45.56 0.42 3.87 16 36 H 0.40 2.39 8.35 -40.82 -0.34 2.05 16 37 H 0.40 3.54 8.93 -40.82 -0.36 3.18 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -35.81 311.59 -7.24 -43.06 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -2.91 Total: 25.71 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -4.18 Total: -11.23 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.55 Total: -59.10 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.37 Total: -19.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.81 -7.24 -43.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169331911.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.957 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds