Wall clock time and date at job start Tue Mar 31 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86800 * 120.00319 * 2 1 4 4 H 1.48496 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46978 * 300.00188 * 3 2 1 6 6 H 1.48499 * 109.46916 * 59.99937 * 3 2 1 7 7 C 1.39681 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.40906 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.38959 * 126.93901 * 338.01863 * 9 7 2 11 11 N 1.35656 * 109.24021 * 180.02562 * 10 9 7 12 12 H 0.97005 * 124.69291 * 180.02562 * 11 10 9 13 13 C 1.38129 * 110.60767 * 0.02562 * 11 10 9 14 14 C 1.39203 * 132.74660 * 180.02562 * 13 11 10 15 15 C 1.37945 * 120.13868 * 179.97438 * 14 13 11 16 16 C 1.38496 * 120.70262 * 0.02562 * 15 14 13 17 17 C 1.38691 * 120.15606 * 359.97438 * 16 15 14 18 18 N 1.39400 * 120.22828 * 179.97438 * 17 16 15 19 19 C 1.46495 * 120.00293 * 354.19887 * 18 17 16 20 20 H 1.08997 * 109.47346 * 324.99432 * 19 18 17 21 21 C 1.53003 * 109.47431 * 84.99570 * 19 18 17 22 22 O 1.42902 * 109.46989 * 64.99911 * 21 19 18 23 23 C 1.50703 * 109.47453 * 204.99335 * 19 18 17 24 24 N 1.34768 * 120.00311 * 179.97438 * 23 19 18 25 25 O 1.21289 * 119.99349 * 0.02562 * 23 19 18 26 26 C 1.39816 * 119.54126 * 359.97438 * 17 16 15 27 27 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 28 28 H 1.08005 * 125.37768 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.93153 * 0.02562 * 14 13 11 30 30 H 1.07996 * 119.65226 * 179.72481 * 15 14 13 31 31 H 1.07995 * 119.92145 * 180.02562 * 16 15 14 32 32 H 0.97004 * 119.99860 * 174.18938 * 18 17 16 33 33 H 1.08998 * 109.47319 * 185.00298 * 21 19 18 34 34 H 1.08999 * 109.47000 * 305.00231 * 21 19 18 35 35 H 0.96701 * 113.99651 * 180.02562 * 22 21 19 36 36 H 0.97000 * 119.99791 * 359.97438 * 24 23 19 37 37 H 0.97005 * 120.00426 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.7049 1.3463 -0.0006 5 1 1.8862 2.3964 -1.2125 6 1 1.8862 2.3964 1.2125 7 6 2.0092 -1.2097 -0.0005 8 1 3.0893 -1.2097 -0.0010 9 6 1.3046 -2.4299 -0.0016 10 6 -0.0050 -2.6384 0.4134 11 7 -0.3198 -3.9488 0.2586 12 1 -1.1797 -4.3399 0.4794 13 6 0.7534 -4.6490 -0.2569 14 6 0.9353 -5.9880 -0.5911 15 6 2.1438 -6.4170 -1.0995 16 6 3.1892 -5.5275 -1.2837 17 6 3.0307 -4.1888 -0.9576 18 7 4.0821 -3.2923 -1.1419 19 6 5.3977 -3.7823 -1.5605 20 1 5.5826 -4.7573 -1.1097 21 6 5.4332 -3.9101 -3.0847 22 8 5.3072 -2.6145 -3.6744 23 6 6.4608 -2.8124 -1.1129 24 7 7.7568 -3.0585 -1.3886 25 8 6.1500 -1.8106 -0.5038 26 6 1.8090 -3.7447 -0.4428 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6676 -1.8773 0.7985 29 1 0.1282 -6.6924 -0.4530 30 1 2.2778 -7.4585 -1.3520 31 1 4.1299 -5.8770 -1.6829 32 1 3.9426 -2.3440 -0.9932 33 1 6.3790 -4.3578 -3.3899 34 1 4.6088 -4.5416 -3.4157 35 1 5.3214 -2.6194 -4.6413 36 1 8.0054 -3.8603 -1.8747 37 1 8.4411 -2.4344 -1.1002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169331911.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:36 Heat of formation + Delta-G solvation = -61.031566 kcal Electronic energy + Delta-G solvation = -23175.736014 eV Core-core repulsion = 19723.704661 eV Total energy + Delta-G solvation = -3452.031353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46653 -40.76322 -38.31406 -37.34423 -35.82225 -34.92125 -34.70542 -32.12309 -30.22412 -29.53199 -28.42453 -26.40369 -24.90612 -22.83195 -22.53559 -21.27485 -20.88455 -19.43306 -18.59091 -18.38083 -17.69021 -17.40443 -16.99678 -16.45241 -16.21120 -16.03825 -15.73602 -15.34778 -14.99866 -14.74999 -14.46875 -14.38536 -14.06137 -13.72663 -13.19482 -13.00644 -12.95007 -12.91131 -12.45940 -12.22873 -12.03995 -11.64773 -11.50925 -11.26916 -11.04908 -10.81091 -10.67216 -10.63166 -9.18821 -8.65466 -8.39928 -7.68508 -5.94235 0.86864 1.15745 1.33957 1.34017 1.51218 1.61014 2.27341 2.32450 2.37655 2.79936 2.98883 3.24256 3.36396 3.67401 3.93233 4.14129 4.31464 4.41736 4.44012 4.58017 4.73512 4.75981 4.93954 5.06531 5.24787 5.36019 5.43979 5.62600 5.82256 5.88939 6.00262 6.09234 6.16925 6.40793 6.56901 6.78991 6.88898 6.97409 6.98221 7.18199 7.27218 7.35562 7.47868 8.62747 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.008298 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.880482 B = 3373.648127 C = 5404.049811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.021 3.979 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.056 0.944 9 C -0.004 4.004 10 C -0.104 4.104 11 N -0.584 5.584 12 H 0.410 0.590 13 C 0.112 3.888 14 C -0.218 4.218 15 C -0.051 4.051 16 C -0.271 4.271 17 C 0.259 3.741 18 N -0.733 5.733 19 C 0.126 3.874 20 H 0.144 0.856 21 C 0.066 3.934 22 O -0.592 6.592 23 C 0.516 3.484 24 N -0.824 5.824 25 O -0.589 6.589 26 C -0.231 4.231 27 H 0.275 0.725 28 H 0.157 0.843 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.400 0.600 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.421 0.579 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 -12.813 -7.497 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.186 4.186 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.229 4.229 11 N -0.187 5.187 12 H 0.246 0.754 13 C 0.000 4.000 14 C -0.242 4.242 15 C -0.071 4.071 16 C -0.296 4.296 17 C 0.155 3.845 18 N -0.363 5.363 19 C 0.017 3.983 20 H 0.161 0.839 21 C -0.014 4.014 22 O -0.401 6.401 23 C 0.300 3.700 24 N -0.389 5.389 25 O -0.469 6.469 26 C -0.240 4.240 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.143 0.857 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.238 0.762 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.253 0.747 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.052 -11.905 -6.503 18.146 hybrid contribution -0.112 1.301 -0.275 1.335 sum 11.940 -10.603 -6.778 17.347 Atomic orbital electron populations 1.69792 1.07720 1.28511 1.43119 1.26268 0.95690 1.02943 0.93713 0.85351 0.78653 0.78244 0.78607 1.20230 1.19384 1.19009 1.18784 0.92958 0.90563 1.46372 0.92609 1.18291 0.93111 0.90831 0.98699 1.22261 0.99974 0.83986 1.16659 1.41249 1.12589 1.07474 1.57394 0.75427 1.18409 0.87654 0.93614 1.00351 1.19969 1.00535 0.91077 1.12599 1.20701 0.90947 0.99540 0.95894 1.20426 1.02134 0.90242 1.16811 1.17542 0.85371 0.90287 0.91327 1.44727 1.07331 1.09501 1.74775 1.21200 0.82852 0.98355 0.95902 0.83917 1.22812 1.02854 0.85294 0.90398 1.86593 1.97264 1.29753 1.26457 1.20833 0.85425 0.86071 0.77682 1.43433 1.05979 1.29195 1.60303 1.90791 1.82657 1.30561 1.42852 1.19344 0.95458 0.95639 1.13580 0.91467 0.82629 0.85665 0.82863 0.83837 0.76185 0.87848 0.91702 0.75475 0.74717 0.75932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.82 10.81 21.79 0.24 -49.58 16 2 C 0.02 1.23 5.47 85.15 0.47 1.70 16 3 Si 0.97 46.39 29.56 68.60 2.03 48.41 16 4 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.45 -27.72 8.73 23.27 0.20 -27.51 16 8 H 0.06 3.51 5.82 -2.91 -0.02 3.49 16 9 C 0.00 -0.22 5.98 -19.99 -0.12 -0.34 16 10 C -0.10 -5.80 10.77 84.27 0.91 -4.90 16 11 N -0.58 -27.09 5.99 -184.92 -1.11 -28.19 16 12 H 0.41 15.43 8.96 -92.70 -0.83 14.60 16 13 C 0.11 5.18 7.23 38.87 0.28 5.46 16 14 C -0.22 -7.97 10.07 22.43 0.23 -7.74 16 15 C -0.05 -1.59 10.00 22.26 0.22 -1.37 16 16 C -0.27 -9.00 8.67 22.44 0.19 -8.81 16 17 C 0.26 11.33 6.65 38.43 0.26 11.58 16 18 N -0.73 -30.89 5.06 -322.16 -1.63 -32.52 16 19 C 0.13 3.58 2.46 44.25 0.11 3.69 16 20 H 0.14 3.04 6.76 -2.39 -0.02 3.03 16 21 C 0.07 1.36 6.51 71.98 0.47 1.83 16 22 O -0.59 -15.95 13.09 -148.98 -1.95 -17.90 16 23 C 0.52 15.83 7.01 87.66 0.61 16.44 16 24 N -0.82 -13.90 8.78 -173.53 -1.52 -15.43 16 25 O -0.59 -26.32 16.67 -3.06 -0.05 -26.37 16 26 C -0.23 -12.01 6.27 -19.95 -0.13 -12.13 16 27 H 0.28 14.65 8.30 -92.71 -0.77 13.88 16 28 H 0.16 8.99 6.38 -2.91 -0.02 8.98 16 29 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.14 3.44 5.92 -2.91 -0.02 3.43 16 32 H 0.40 20.64 4.87 -92.71 -0.45 20.19 16 33 H 0.10 0.99 7.71 -2.39 -0.02 0.98 16 34 H 0.06 1.38 7.28 -2.39 -0.02 1.37 16 35 H 0.40 6.49 9.12 -74.06 -0.68 5.82 16 36 H 0.42 3.13 8.35 -92.71 -0.77 2.35 16 37 H 0.41 6.30 8.93 -92.70 -0.83 5.47 16 Total: -1.00 -86.49 311.59 -2.65 -89.15 By element: Atomic # 1 Polarization: 56.88 SS G_CDS: -2.36 Total: 54.52 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.70 Total: -22.09 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -4.03 Total: -125.72 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -2.00 Total: -44.27 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -86.49 -2.65 -89.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169331911.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.117 kcal (2) G-P(sol) polarization free energy of solvation -86.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds