Wall clock time and date at job start Tue Mar 31 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46952 * 23.33346 * 3 2 1 5 5 N 1.46503 * 109.46910 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00203 * 265.09393 * 5 4 3 7 7 C 1.50704 * 109.47539 * 262.70200 * 6 5 4 8 8 H 1.08003 * 119.99530 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00253 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99871 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99984 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46797 * 89.99846 * 11 9 7 13 13 H 1.48501 * 109.46987 * 209.99474 * 11 9 7 14 14 H 1.48498 * 109.47284 * 329.99801 * 11 9 7 15 15 C 1.34775 * 119.99793 * 85.09557 * 5 4 3 16 16 O 1.21518 * 120.00245 * 2.95870 * 15 5 4 17 17 C 1.48169 * 120.00157 * 182.96350 * 15 5 4 18 18 C 1.39305 * 119.72726 * 173.15206 * 17 15 5 19 19 C 1.38584 * 119.06238 * 179.70228 * 18 17 15 20 20 C 1.50704 * 120.75608 * 180.24941 * 19 18 17 21 21 O 1.42905 * 109.47054 * 90.00121 * 20 19 18 22 22 C 1.38620 * 118.48935 * 0.27247 * 19 18 17 23 23 C 1.38561 * 119.35291 * 0.02562 * 22 19 18 24 24 N 1.31528 * 120.90191 * 0.02562 * 23 22 19 25 25 H 1.08995 * 109.47140 * 263.33609 * 3 2 1 26 26 H 1.09002 * 109.47012 * 143.33476 * 3 2 1 27 27 H 1.09004 * 109.46940 * 60.00405 * 4 3 2 28 28 H 1.08991 * 109.47759 * 299.99750 * 4 3 2 29 29 H 1.08999 * 109.47393 * 22.70778 * 6 5 4 30 30 H 1.09005 * 109.47192 * 142.70390 * 6 5 4 31 31 H 0.97006 * 120.00138 * 179.97438 * 10 9 7 32 32 H 1.08004 * 120.46991 * 359.96600 * 18 17 15 33 33 H 1.09000 * 109.47447 * 209.99629 * 20 19 18 34 34 H 1.08997 * 109.47653 * 330.00203 * 20 19 18 35 35 H 0.96698 * 114.00378 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.32641 * 179.97438 * 22 19 18 37 37 H 1.07995 * 119.55259 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3236 -0.5713 5 7 4.5836 -1.3227 -0.5719 6 6 5.3154 -0.9214 -1.7759 7 6 5.7234 -2.1493 -2.5485 8 1 5.4632 -3.1305 -2.1798 9 6 6.4279 -2.0201 -3.7266 10 7 6.7844 -3.0916 -4.4005 11 14 6.8774 -0.3229 -4.3647 12 1 8.1998 0.0766 -3.8196 13 1 6.9420 -0.3529 -5.8480 14 1 5.8479 0.6567 -3.9337 15 6 5.2581 -1.6911 0.5352 16 8 4.6523 -2.0754 1.5161 17 6 6.7383 -1.6276 0.5565 18 6 7.4231 -1.8713 1.7449 19 6 8.8078 -1.8144 1.7477 20 6 9.5873 -2.0770 3.0105 21 8 9.8883 -3.4709 3.1032 22 6 9.4595 -1.5099 0.5628 23 6 8.7139 -1.2726 -0.5808 24 7 7.4003 -1.3322 -0.5552 25 1 2.9713 0.1201 1.0207 26 1 2.9710 0.8252 -0.6137 27 1 2.7553 -1.4430 -1.5921 28 1 2.7557 -2.1481 0.0422 29 1 4.6755 -0.2962 -2.3986 30 1 6.2049 -0.3598 -1.4901 31 1 7.2798 -3.0007 -5.2296 32 1 6.8828 -2.1056 2.6502 33 1 10.5153 -1.5056 2.9901 34 1 8.9937 -1.7753 3.8734 35 1 10.3903 -3.7132 3.8933 36 1 10.5377 -1.4572 0.5314 37 1 9.2183 -1.0347 -1.5057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193926761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:55 Heat of formation + Delta-G solvation = 4.354143 kcal Electronic energy + Delta-G solvation = -22627.997558 eV Core-core repulsion = 19178.801542 eV Total energy + Delta-G solvation = -3449.196016 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39682 -38.76474 -36.91958 -36.68250 -35.37400 -33.03026 -32.49036 -31.50068 -30.62292 -27.74271 -26.64081 -25.14218 -22.96726 -22.58173 -21.93075 -18.96783 -17.62422 -17.61658 -16.82845 -16.79453 -16.47709 -15.84384 -15.37317 -14.92844 -14.68756 -14.54919 -14.08256 -13.79402 -13.71566 -13.60279 -13.26632 -12.82765 -12.56862 -12.39376 -12.23611 -12.07382 -11.80459 -11.70552 -11.36637 -11.00279 -10.73887 -10.62628 -10.27184 -10.22877 -9.73416 -9.52990 -9.45243 -8.85356 -8.64766 -8.39910 -7.85292 -6.05785 -4.00009 1.03835 1.44158 2.78855 2.89267 3.19978 3.24675 3.32934 3.33271 3.51443 4.07549 4.28713 4.39467 4.39648 4.70157 4.79861 4.87425 5.11412 5.16565 5.25118 5.26743 5.28880 5.33733 5.43069 5.58363 5.69988 5.94904 6.03627 6.13271 6.18525 6.39400 6.45249 6.79354 7.10026 7.36252 7.43632 7.63197 7.65147 7.99148 8.24671 8.50413 8.73530 8.98431 9.54837 11.07814 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.006856 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.989465 B = 4083.292464 C = 6169.440387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.220 3.780 3 C -0.046 4.046 4 C 0.123 3.877 5 N -0.571 5.571 6 C 0.195 3.805 7 C -0.499 4.499 8 H 0.070 0.930 9 C 0.076 3.924 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.274 1.274 13 H -0.291 1.291 14 H -0.266 1.266 15 C 0.573 3.427 16 O -0.560 6.560 17 C 0.082 3.918 18 C -0.099 4.099 19 C -0.074 4.074 20 C 0.122 3.878 21 O -0.564 6.564 22 C -0.136 4.136 23 C 0.089 3.911 24 N -0.384 5.384 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.262 0.738 32 H 0.141 0.859 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.379 0.621 36 H 0.132 0.868 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.063 7.090 12.031 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.098 4.098 3 C -0.087 4.087 4 C -0.002 4.002 5 N -0.299 5.299 6 C 0.075 3.925 7 C -0.538 4.538 8 H 0.088 0.912 9 C -0.125 4.125 10 N -0.540 5.540 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.217 1.217 14 H -0.191 1.191 15 C 0.361 3.639 16 O -0.440 6.440 17 C -0.056 4.056 18 C -0.120 4.120 19 C -0.082 4.082 20 C 0.044 3.956 21 O -0.370 6.370 22 C -0.156 4.156 23 C -0.069 4.069 24 N -0.095 5.095 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.150 0.850 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.309 6.993 11.027 13.750 hybrid contribution 1.745 0.543 0.548 1.908 sum 6.054 7.536 11.575 15.080 Atomic orbital electron populations 1.81186 1.13027 1.08853 1.09411 1.29052 0.95060 0.92945 0.92694 1.19777 0.81476 1.02065 1.05388 1.21231 0.81099 0.95083 1.02814 1.47867 1.05106 1.63286 1.13611 1.20590 0.92885 0.97535 0.81487 1.21140 1.34462 0.92830 1.05351 0.91183 1.24725 0.95299 0.96041 0.96449 1.69907 1.39412 1.28332 1.16310 0.86937 0.79590 0.85532 0.77934 1.20017 1.21699 1.19125 1.17853 0.85805 0.77513 0.82750 1.90704 1.69070 1.49023 1.35234 1.21112 0.94642 1.00204 0.89692 1.21890 0.93600 0.97098 0.99384 1.19832 0.93422 0.99739 0.95214 1.20904 0.97459 0.82839 0.94376 1.86619 1.78080 1.23873 1.48389 1.22222 1.01170 0.99040 0.93192 1.23027 0.90057 0.96128 0.97724 1.68570 1.08739 1.07209 1.25025 0.87153 0.87109 0.88848 0.89717 0.95820 0.90584 0.92777 0.84128 0.92463 0.92374 0.77348 0.84997 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.25 18.54 42.15 0.78 -6.46 16 2 C 0.22 3.04 15.43 -20.76 -0.32 2.72 16 3 C -0.05 -0.56 5.99 -29.52 -0.18 -0.73 16 4 C 0.12 1.92 5.31 -4.04 -0.02 1.90 16 5 N -0.57 -10.75 2.49 -176.05 -0.44 -11.19 16 6 C 0.20 4.09 3.81 -5.19 -0.02 4.07 16 7 C -0.50 -12.80 8.50 -34.44 -0.29 -13.09 16 8 H 0.07 2.07 8.06 -52.48 -0.42 1.65 16 9 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -26.06 13.96 55.43 0.77 -25.29 16 11 Si 0.87 19.54 27.47 -169.99 -4.67 14.87 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -5.61 6.54 56.52 0.37 -5.24 16 15 C 0.57 11.21 7.55 -12.18 -0.09 11.11 16 16 O -0.56 -11.39 15.99 5.35 0.09 -11.31 16 17 C 0.08 1.53 6.62 -83.01 -0.55 0.98 16 18 C -0.10 -1.58 9.33 -39.06 -0.36 -1.95 16 19 C -0.07 -1.02 5.54 -104.35 -0.58 -1.60 16 20 C 0.12 1.22 7.22 36.01 0.26 1.48 16 21 O -0.56 -6.27 13.64 -35.23 -0.48 -6.75 16 22 C -0.14 -1.86 9.82 -39.32 -0.39 -2.25 16 23 C 0.09 1.48 11.18 -17.56 -0.20 1.28 16 24 N -0.38 -7.46 4.97 -9.80 -0.05 -7.51 16 25 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 28 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 29 H 0.02 0.48 7.07 -51.93 -0.37 0.11 16 30 H 0.08 1.59 4.69 -52.18 -0.24 1.34 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.14 2.11 7.66 -52.48 -0.40 1.71 16 33 H 0.06 0.44 8.10 -51.93 -0.42 0.01 16 34 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.38 2.09 9.12 45.56 0.42 2.51 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -33.60 328.66 -5.41 -39.00 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.53 Total: 3.83 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -2.84 Total: 5.86 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 1.07 Total: -50.45 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.40 Total: -18.06 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.60 -5.41 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193926761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.357 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds