Wall clock time and date at job start Tue Mar 31 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47373 * 197.70263 * 3 2 1 5 5 N 1.46499 * 109.47658 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00226 * 264.82741 * 5 4 3 7 7 C 1.50702 * 109.46965 * 274.20051 * 6 5 4 8 8 H 1.08003 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99822 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00133 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99623 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47264 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47129 * 119.99991 * 11 9 7 14 14 H 1.48506 * 109.46771 * 239.99664 * 11 9 7 15 15 C 1.34775 * 119.99876 * 84.81943 * 5 4 3 16 16 O 1.21517 * 120.00124 * 3.32978 * 15 5 4 17 17 C 1.48147 * 120.00191 * 183.32011 * 15 5 4 18 18 C 1.39845 * 120.92058 * 311.14443 * 17 15 5 19 19 C 1.38129 * 119.00087 * 179.97438 * 18 17 15 20 20 N 1.31824 * 120.89759 * 359.97438 * 19 18 17 21 21 C 1.31798 * 122.04919 * 0.02562 * 20 19 18 22 22 C 1.50704 * 119.55187 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47089 * 180.02562 * 22 21 20 24 24 C 1.38163 * 120.89735 * 0.27780 * 21 20 19 25 25 H 1.09011 * 109.47277 * 77.70551 * 3 2 1 26 26 H 1.09005 * 109.47191 * 317.70660 * 3 2 1 27 27 H 1.09005 * 109.47020 * 60.00197 * 4 3 2 28 28 H 1.08996 * 109.47209 * 300.00244 * 4 3 2 29 29 H 1.09002 * 109.47199 * 34.19631 * 6 5 4 30 30 H 1.08993 * 109.47185 * 154.19985 * 6 5 4 31 31 H 0.97004 * 120.00167 * 180.02562 * 10 9 7 32 32 H 1.07996 * 120.49641 * 0.02562 * 18 17 15 33 33 H 1.07996 * 119.54759 * 180.02562 * 19 18 17 34 34 H 1.08996 * 109.47721 * 300.00720 * 22 21 20 35 35 H 1.09006 * 109.47076 * 60.00736 * 22 21 20 36 36 H 0.96698 * 113.99940 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.50501 * 179.69783 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3750 0.4386 5 7 4.5824 1.3756 0.4392 6 6 5.3146 1.1008 1.6780 7 6 5.4748 2.3786 2.4608 8 1 5.0720 3.3030 2.0739 9 6 6.1366 2.3677 3.6703 10 7 6.6276 1.2422 4.1411 11 14 6.3346 3.9514 4.6408 12 1 5.6973 5.0692 3.8995 13 1 5.6852 3.8031 5.9680 14 1 7.7793 4.2410 4.8262 15 6 5.2567 1.6287 -0.7000 16 8 4.6509 1.9160 -1.7135 17 6 6.7363 1.5570 -0.7166 18 6 7.4981 2.2037 0.2617 19 6 8.8752 2.1101 0.2085 20 7 9.4706 1.4232 -0.7462 21 6 8.7906 0.7990 -1.6870 22 6 9.5292 0.0302 -2.7521 23 8 8.5892 -0.5561 -3.6547 24 6 7.4100 0.8451 -1.7135 25 1 2.9715 -0.2180 -1.0042 26 1 2.9717 -0.7594 0.6916 27 1 2.7540 1.5937 1.4428 28 1 2.7538 2.1350 -0.2529 29 1 4.7602 0.3763 2.2747 30 1 6.2977 0.6966 1.4370 31 1 7.0929 1.2344 4.9922 32 1 7.0169 2.7672 1.0474 33 1 9.4721 2.6058 0.9597 34 1 10.1850 0.7069 -3.2999 35 1 10.1247 -0.7551 -2.2864 36 1 8.9951 -1.0676 -4.3679 37 1 6.8592 0.3353 -2.4902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196238460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:04 Heat of formation + Delta-G solvation = -20.392519 kcal Electronic energy + Delta-G solvation = -22553.663082 eV Core-core repulsion = 19103.393970 eV Total energy + Delta-G solvation = -3450.269112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = -0.01 seconds Orbital eigenvalues (eV) -40.30962 -38.86240 -36.78997 -36.64721 -35.36629 -33.23727 -32.42399 -31.29208 -30.83421 -27.48080 -26.38710 -25.12978 -23.41074 -22.67397 -21.92327 -18.91353 -17.59878 -17.46144 -16.93875 -16.66112 -16.00528 -15.54190 -15.18525 -15.06365 -14.88063 -14.68817 -14.28505 -14.08831 -13.69019 -13.44405 -13.00887 -12.83310 -12.53979 -12.37030 -12.27230 -11.95152 -11.66287 -11.55738 -11.14781 -11.04379 -10.94697 -10.70661 -10.40001 -10.30600 -9.95624 -9.75272 -9.34229 -8.95013 -8.74508 -8.46325 -8.04886 -6.36718 -4.45321 1.34255 1.53678 2.80129 2.92289 3.11263 3.20199 3.22480 3.26623 3.53690 3.85510 4.15160 4.19886 4.29427 4.87364 4.95346 5.01161 5.17863 5.23568 5.29292 5.29848 5.44166 5.59860 5.63015 5.70239 5.94270 6.09020 6.16683 6.19318 6.39921 6.48029 6.73906 7.00436 7.10112 7.27476 7.52471 7.56586 7.67967 7.83758 8.02113 8.26663 8.55807 8.71296 9.21998 10.69032 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.007254 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.951415 B = 3859.025646 C = 6386.113906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.222 3.778 3 C -0.047 4.047 4 C 0.127 3.873 5 N -0.587 5.587 6 C 0.228 3.772 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.892 3.108 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.562 3.438 16 O -0.556 6.556 17 C -0.081 4.081 18 C -0.116 4.116 19 C 0.092 3.908 20 N -0.476 5.476 21 C 0.095 3.905 22 C 0.136 3.864 23 O -0.568 6.568 24 C -0.105 4.105 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.180 0.820 33 H 0.159 0.841 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.384 0.616 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -3.015 -8.180 10.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.096 4.096 3 C -0.088 4.088 4 C 0.002 3.998 5 N -0.316 5.316 6 C 0.109 3.891 7 C -0.586 4.586 8 H 0.085 0.915 9 C -0.134 4.134 10 N -0.516 5.516 11 Si 0.719 3.281 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.205 1.205 15 C 0.349 3.651 16 O -0.436 6.436 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.065 4.065 20 N -0.187 5.187 21 C -0.042 4.042 22 C 0.058 3.942 23 O -0.374 6.374 24 C -0.125 4.125 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.197 0.803 33 H 0.177 0.823 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.809 -2.719 -8.132 9.382 hybrid contribution 0.201 0.511 0.571 0.792 sum 4.010 -2.208 -7.561 8.838 Atomic orbital electron populations 1.81180 1.13034 1.08867 1.09557 1.29061 0.95067 0.92918 0.92590 1.19776 0.81445 1.01897 1.05668 1.21143 0.80980 0.94260 1.03408 1.48125 1.05459 1.67394 1.10619 1.19717 0.92736 0.97262 0.79387 1.21466 1.37598 0.94768 1.04773 0.91524 1.24942 0.94872 0.96567 0.96998 1.69922 1.35814 1.25708 1.20124 0.86522 0.78235 0.83220 0.80136 1.19437 1.20700 1.20518 1.18268 0.86706 0.76884 0.83196 1.90718 1.69657 1.49542 1.33664 1.20269 0.94016 0.99056 0.95875 1.23452 0.95088 0.97576 0.97430 1.22606 0.92554 0.96065 0.95294 1.66987 1.41827 1.07368 1.02555 1.20579 0.90810 0.97665 0.95184 1.20488 0.89389 0.95478 0.88867 1.86440 1.36174 1.71738 1.43020 1.21800 0.94867 0.98117 0.97738 0.87237 0.86984 0.88758 0.89997 0.94202 0.93517 0.92232 0.80280 0.82340 0.91694 0.91581 0.76854 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.41 18.54 42.15 0.78 -6.63 16 2 C 0.22 3.15 15.43 -20.76 -0.32 2.83 16 3 C -0.05 -0.59 5.99 -29.52 -0.18 -0.77 16 4 C 0.13 1.97 5.36 -4.04 -0.02 1.95 16 5 N -0.59 -10.70 2.47 -176.07 -0.43 -11.14 16 6 C 0.23 4.71 4.65 -5.19 -0.02 4.69 16 7 C -0.55 -12.34 6.68 -34.44 -0.23 -12.57 16 8 H 0.07 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.88 -21.79 13.29 55.43 0.74 -21.05 16 11 Si 0.89 18.57 29.54 -169.99 -5.02 13.55 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 15 C 0.56 10.84 7.26 -12.19 -0.09 10.75 16 16 O -0.56 -11.63 16.69 5.35 0.09 -11.54 16 17 C -0.08 -1.51 4.89 -104.64 -0.51 -2.03 16 18 C -0.12 -2.15 7.73 -39.02 -0.30 -2.45 16 19 C 0.09 1.56 11.17 -17.59 -0.20 1.36 16 20 N -0.48 -8.01 10.25 -9.53 -0.10 -8.10 16 21 C 0.10 1.52 6.78 -82.63 -0.56 0.96 16 22 C 0.14 1.59 7.59 36.01 0.27 1.86 16 23 O -0.57 -6.20 12.11 -35.23 -0.43 -6.63 16 24 C -0.10 -1.81 9.14 -39.03 -0.36 -2.16 16 25 H 0.11 1.36 8.14 -51.92 -0.42 0.94 16 26 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 28 H 0.08 1.30 7.54 -51.93 -0.39 0.91 16 29 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.05 1.03 5.66 -51.93 -0.29 0.74 16 31 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.18 3.59 4.80 -52.49 -0.25 3.33 16 33 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.38 2.05 9.12 45.56 0.42 2.46 16 37 H 0.14 2.41 7.00 -52.48 -0.37 2.05 16 LS Contribution 329.33 15.07 4.96 4.96 Total: -1.00 -29.04 329.33 -5.41 -34.45 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.39 Total: 6.14 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -2.61 Total: 5.99 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.99 Total: -46.93 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.34 Total: -18.17 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.04 -5.41 -34.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196238460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.056 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.01 seconds