Wall clock time and date at job start Tue Mar 31 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35560 * 117.00489 * 2 1 4 4 C 1.39194 * 120.89305 * 359.97438 * 3 2 1 5 5 C 1.37911 * 119.39133 * 180.02562 * 4 3 2 6 6 N 1.32086 * 121.28302 * 0.02562 * 5 4 3 7 7 C 1.32167 * 121.97667 * 359.97438 * 6 5 4 8 8 O 1.35475 * 119.78185 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99852 * 359.97438 * 8 7 6 10 10 H 1.08997 * 110.63837 * 26.86344 * 9 8 7 11 11 C 1.55159 * 110.72103 * 150.00014 * 9 8 7 12 12 C 1.54900 * 101.58132 * 154.04606 * 11 9 8 13 13 N 1.47426 * 104.83526 * 322.99136 * 12 11 9 14 14 C 1.36940 * 125.64935 * 204.09570 * 13 12 11 15 15 H 1.07999 * 119.99551 * 163.18887 * 14 13 12 16 16 C 1.38809 * 119.99738 * 343.18512 * 14 13 12 17 17 N 1.31613 * 120.00463 * 331.97124 * 16 14 13 18 18 Si 1.86799 * 119.99593 * 151.97066 * 16 14 13 19 19 H 1.48502 * 109.47387 * 269.99699 * 18 16 14 20 20 H 1.48507 * 109.47235 * 149.99669 * 18 16 14 21 21 H 1.48500 * 109.47265 * 29.99969 * 18 16 14 22 22 C 1.47020 * 108.70058 * 24.35707 * 13 12 11 23 23 C 1.40294 * 120.44586 * 0.25809 * 7 6 5 24 24 C 1.43196 * 120.65238 * 179.72540 * 23 7 6 25 25 N 3.56812 * 166.84757 * 181.18519 * 2 1 3 26 26 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47071 * 299.99648 * 1 2 3 28 28 H 1.08996 * 109.47485 * 59.99581 * 1 2 3 29 29 H 1.08005 * 120.30265 * 0.05163 * 4 3 2 30 30 H 1.08004 * 119.36265 * 180.02562 * 5 4 3 31 31 H 1.08996 * 111.00055 * 35.96959 * 11 9 8 32 32 H 1.09001 * 111.03774 * 272.13468 * 11 9 8 33 33 H 1.09003 * 110.36896 * 204.15175 * 12 11 9 34 34 H 1.09004 * 110.37035 * 81.83212 * 12 11 9 35 35 H 0.97011 * 119.99773 * 353.96155 * 17 16 14 36 36 H 1.09000 * 109.88456 * 118.13257 * 22 13 12 37 37 H 1.09001 * 109.88017 * 239.30105 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 6 1.3047 2.3869 -0.0005 5 6 1.9629 3.5988 -0.0011 6 7 3.2823 3.6628 -0.0016 7 6 4.0357 2.5769 -0.0011 8 8 5.3853 2.6943 -0.0022 9 6 5.9213 4.0190 -0.0044 10 1 5.2221 4.7171 0.4561 11 6 7.2927 4.0576 0.7203 12 6 7.9659 5.2794 0.0470 13 7 7.5366 5.2182 -1.3620 14 6 8.2020 5.7704 -2.4238 15 1 7.9704 5.4536 -3.4300 16 6 9.1739 6.7374 -2.2068 17 7 9.1040 7.5147 -1.1471 18 14 10.5813 6.9353 -3.4191 19 1 11.7119 6.0628 -3.0118 20 1 11.0285 8.3514 -3.4316 21 1 10.1225 6.5491 -4.7776 22 6 6.2724 4.4714 -1.4375 23 6 3.4472 1.3034 -0.0055 24 6 4.2592 0.1239 -0.0109 25 7 4.9035 -0.8117 -0.0168 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2252 2.3530 -0.0001 30 1 1.3885 4.5134 -0.0010 31 1 7.8598 3.1460 0.5319 32 1 7.1654 4.2219 1.7903 33 1 9.0509 5.2011 0.1167 34 1 7.6212 6.2048 0.5087 35 1 8.3291 7.4724 -0.5649 36 1 5.4844 5.1149 -1.8287 37 1 6.3948 3.5993 -2.0799 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225567292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:13 Heat of formation + Delta-G solvation = 25.739739 kcal Electronic energy + Delta-G solvation = -22266.652150 eV Core-core repulsion = 18818.383483 eV Total energy + Delta-G solvation = -3448.268667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29107 -39.64310 -38.06976 -36.56041 -36.32217 -32.63546 -32.16638 -30.89361 -29.22973 -28.18253 -27.36456 -24.85675 -24.44971 -23.05290 -20.65588 -20.36611 -19.68766 -18.59996 -17.81958 -17.47173 -16.92516 -16.50265 -15.57126 -15.41614 -14.84473 -14.50429 -14.46666 -13.81753 -13.62974 -13.43093 -13.17581 -13.03705 -12.88746 -12.78272 -12.60886 -12.32963 -11.99698 -11.84798 -11.56605 -10.93109 -10.70415 -10.51468 -10.42161 -10.24758 -10.02123 -9.83093 -9.53399 -9.33642 -8.79616 -8.41738 -6.96679 -6.10295 -3.15731 0.42376 0.95266 2.26875 2.70792 2.91195 3.15339 3.53288 3.55686 3.65499 3.71475 3.72405 4.10898 4.27400 4.59082 4.61188 4.64606 4.65357 4.85208 4.99377 5.08788 5.15122 5.30066 5.35121 5.48890 5.54623 5.63616 5.71570 6.01715 6.14665 6.27503 6.49388 6.58221 6.61341 6.89508 6.98006 7.24677 7.49310 7.65311 7.78620 8.47616 9.00448 9.79937 10.33141 11.22205 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029714 B = 0.003481 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.093247 B = 8042.523627 C = 8335.966007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.246 3.754 4 C -0.309 4.309 5 C 0.211 3.789 6 N -0.553 5.553 7 C 0.414 3.586 8 O -0.282 6.282 9 C 0.074 3.926 10 H 0.103 0.897 11 C -0.133 4.133 12 C 0.146 3.854 13 N -0.600 5.600 14 C -0.336 4.336 15 H 0.066 0.934 16 C -0.024 4.024 17 N -0.917 5.917 18 Si 1.068 2.932 19 H -0.293 1.293 20 H -0.290 1.290 21 H -0.292 1.292 22 C 0.125 3.875 23 C -0.145 4.145 24 C 0.277 3.723 25 N -0.416 5.416 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.172 0.828 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.269 0.731 36 H 0.034 0.966 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.767 -10.072 5.243 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.211 6.211 3 C 0.189 3.811 4 C -0.330 4.330 5 C 0.054 3.946 6 N -0.280 5.280 7 C 0.232 3.768 8 O -0.185 6.185 9 C 0.019 3.981 10 H 0.121 0.879 11 C -0.171 4.171 12 C 0.021 3.979 13 N -0.328 5.328 14 C -0.464 4.464 15 H 0.084 0.916 16 C -0.226 4.226 17 N -0.557 5.557 18 Si 0.898 3.102 19 H -0.220 1.220 20 H -0.216 1.216 21 H -0.218 1.218 22 C -0.001 4.001 23 C -0.153 4.153 24 C -0.039 4.039 25 N -0.092 5.092 26 H 0.125 0.875 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.168 0.832 30 H 0.189 0.811 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.591 -10.290 4.837 20.946 hybrid contribution -2.533 -0.916 0.209 2.702 sum -20.124 -11.206 5.046 23.580 Atomic orbital electron populations 1.23272 0.76649 1.04886 1.02276 1.86072 1.22740 1.25819 1.86450 1.18836 0.89447 0.85285 0.87487 1.21953 1.01864 0.92069 1.17146 1.22494 0.88499 0.97525 0.86075 1.67587 1.07817 1.29849 1.22759 1.19491 0.85440 0.86983 0.84928 1.86325 1.14292 1.33530 1.84402 1.23761 0.95412 0.79851 0.99121 0.87881 1.23055 0.93965 1.01299 0.98780 1.21553 0.98416 0.92994 0.84953 1.44451 1.20938 1.64145 1.03260 1.19787 1.19839 1.20060 0.86673 0.91589 1.25772 1.02337 0.92356 1.02144 1.70760 1.33304 1.34299 1.17386 0.83468 0.76155 0.75983 0.74580 1.22006 1.21591 1.21848 1.21605 0.90032 0.95744 0.92699 1.15024 0.88554 0.87546 1.24151 1.24683 0.93253 0.92319 0.93627 1.81175 1.07933 1.10529 1.09598 0.87520 0.91678 0.91631 0.83182 0.81138 0.90467 0.90892 0.92260 0.95041 0.91967 0.94787 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.09 16 2 O -0.30 -2.80 10.01 -18.38 -0.18 -2.98 16 3 C 0.25 2.52 6.73 -38.34 -0.26 2.26 16 4 C -0.31 -2.29 9.10 -39.35 -0.36 -2.65 16 5 C 0.21 1.85 11.15 -17.56 -0.20 1.65 16 6 N -0.55 -7.27 8.61 -13.05 -0.11 -7.38 16 7 C 0.41 6.11 7.50 -16.64 -0.12 5.99 16 8 O -0.28 -4.90 9.30 -18.12 -0.17 -5.07 16 9 C 0.07 1.37 3.23 -24.89 -0.08 1.29 16 10 H 0.10 1.80 6.95 -51.93 -0.36 1.44 16 11 C -0.13 -2.48 6.81 -24.59 -0.17 -2.65 16 12 C 0.15 3.42 5.30 -2.53 -0.01 3.41 16 13 N -0.60 -15.63 3.29 -170.07 -0.56 -16.19 16 14 C -0.34 -9.69 10.02 -15.06 -0.15 -9.84 16 15 H 0.07 1.91 7.97 -52.49 -0.42 1.49 16 16 C -0.02 -0.70 5.08 -17.43 -0.09 -0.79 16 17 N -0.92 -27.70 12.93 55.49 0.72 -26.98 16 18 Si 1.07 25.73 30.00 -169.99 -5.10 20.63 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.13 2.77 7.03 -3.06 -0.02 2.74 16 23 C -0.15 -1.96 5.78 -106.31 -0.61 -2.58 16 24 C 0.28 4.37 14.52 -22.47 -0.33 4.05 16 25 N -0.42 -7.29 18.54 41.84 0.78 -6.51 16 26 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.17 7.71 -51.93 -0.40 -0.23 16 28 H 0.07 0.19 7.71 -51.93 -0.40 -0.21 16 29 H 0.15 0.57 6.45 -52.48 -0.34 0.23 16 30 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.50 7.95 -51.93 -0.41 1.09 16 34 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 35 H 0.27 8.09 6.06 -40.82 -0.25 7.84 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -34.76 322.39 -5.44 -40.19 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -4.26 Total: -4.53 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.41 Total: 3.97 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.82 Total: -57.07 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.35 Total: -8.05 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.10 Total: 20.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.76 -5.44 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225567292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.934 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds