Wall clock time and date at job start Tue Mar 31 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35556 * 117.00611 * 2 1 4 4 C 1.39196 * 120.89564 * 359.97438 * 3 2 1 5 5 C 1.37911 * 119.39425 * 179.97438 * 4 3 2 6 6 N 1.32085 * 121.28255 * 359.97417 * 5 4 3 7 7 C 1.32184 * 121.97244 * 0.02562 * 6 5 4 8 8 O 1.35483 * 119.77136 * 179.72326 * 7 6 5 9 9 C 1.42893 * 117.00289 * 359.97438 * 8 7 6 10 10 H 1.08994 * 110.88864 * 330.70558 * 9 8 7 11 11 C 1.55160 * 111.00361 * 206.82149 * 9 8 7 12 12 C 1.54371 * 102.91894 * 206.45724 * 11 9 8 13 13 N 1.47023 * 107.29043 * 22.13819 * 12 11 9 14 14 C 1.36935 * 125.64750 * 181.12772 * 13 12 11 15 15 H 1.08008 * 120.00022 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00323 * 359.95985 * 14 13 12 17 17 N 1.31617 * 119.99701 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00298 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47407 * 89.99602 * 18 16 14 20 20 H 1.48500 * 109.47206 * 210.00473 * 18 16 14 21 21 H 1.48508 * 109.47154 * 329.99848 * 18 16 14 22 22 C 1.47423 * 108.70125 * 1.09067 * 13 12 11 23 23 C 1.40282 * 120.44541 * 0.02562 * 7 6 5 24 24 C 1.43199 * 120.64533 * 179.97438 * 23 7 6 25 25 N 3.56814 * 166.84711 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46888 * 300.00327 * 1 2 3 27 27 H 1.08999 * 109.46891 * 60.00090 * 1 2 3 28 28 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.30379 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.36228 * 179.97438 * 5 4 3 31 31 H 1.08997 * 110.72296 * 324.78831 * 11 9 8 32 32 H 1.08999 * 110.72049 * 88.06800 * 11 9 8 33 33 H 1.09006 * 109.84746 * 262.72865 * 12 11 9 34 34 H 1.09003 * 110.03183 * 141.65095 * 12 11 9 35 35 H 0.97003 * 119.99777 * 180.02562 * 17 16 14 36 36 H 1.09002 * 110.36354 * 217.02845 * 22 13 12 37 37 H 1.09009 * 110.45624 * 94.75889 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 6 1.3048 2.3869 -0.0005 5 6 1.9630 3.5988 0.0000 6 7 3.2824 3.6628 0.0016 7 6 4.0357 2.5767 0.0021 8 8 5.3855 2.6942 -0.0020 9 6 5.9214 4.0188 -0.0073 10 1 5.2425 4.7107 -0.5057 11 6 7.3264 4.0476 -0.6649 12 6 7.9938 5.2703 0.0004 13 7 7.2901 5.5166 1.2676 14 6 7.5637 6.5285 2.1487 15 1 6.9864 6.6249 3.0564 16 6 8.5832 7.4302 1.8755 17 7 9.2872 7.3122 0.7698 18 14 8.9568 8.8101 3.0779 19 1 9.9666 8.3479 4.0636 20 1 9.4884 9.9820 2.3368 21 1 7.7120 9.1975 3.7892 22 6 6.2407 4.4944 1.4319 23 6 3.4472 1.3033 0.0006 24 6 4.2592 0.1238 0.0006 25 7 4.9035 -0.8119 0.0004 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2253 2.3531 -0.0014 30 1 1.3887 4.5134 -0.0008 31 1 7.8780 3.1357 -0.4364 32 1 7.2451 4.1906 -1.7424 33 1 7.9029 6.1408 -0.6495 34 1 9.0458 5.0616 0.1950 35 1 9.9998 7.9420 0.5790 36 1 5.3546 4.9311 1.8927 37 1 6.6094 3.6631 2.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225567293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:14 Heat of formation + Delta-G solvation = 5.976222 kcal Electronic energy + Delta-G solvation = -22245.385904 eV Core-core repulsion = 18796.260227 eV Total energy + Delta-G solvation = -3449.125677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12151 -40.57005 -39.10420 -37.78489 -37.58262 -34.33546 -33.06959 -31.84111 -31.03833 -29.18190 -28.34288 -26.53688 -25.66690 -24.02117 -22.13269 -21.93764 -20.61373 -19.58559 -19.04063 -18.44445 -17.81041 -17.16735 -16.78056 -16.45039 -16.18445 -15.85904 -15.56343 -15.33563 -14.79940 -14.54578 -14.47549 -14.13210 -14.03333 -13.95736 -13.74742 -13.46827 -13.24484 -12.92422 -12.69084 -12.48437 -12.34173 -12.18334 -12.02551 -11.87607 -11.66060 -11.55013 -10.76076 -10.71770 -10.09363 -9.69212 -8.95413 -7.85916 -5.23363 -0.40266 0.18827 1.43557 1.48643 1.50987 1.58603 1.59687 1.91309 2.30689 2.51477 2.73946 2.76072 3.25826 3.33484 3.62550 3.70648 3.76785 3.92181 3.95877 4.01901 4.17530 4.39517 4.47133 4.50077 4.57408 4.70064 4.82744 4.84955 4.88704 4.91023 4.94836 5.25711 5.42742 5.57586 5.69870 6.03913 6.07342 6.18244 6.43567 6.79070 7.07230 7.72017 8.36196 9.24758 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.003544 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.080602 B = 7898.886359 C = 8433.320753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.322 6.322 3 C 0.250 3.750 4 C -0.279 4.279 5 C 0.210 3.790 6 N -0.576 5.576 7 C 0.395 3.605 8 O -0.301 6.301 9 C 0.095 3.905 10 H 0.110 0.890 11 C -0.129 4.129 12 C 0.188 3.812 13 N -0.622 5.622 14 C -0.246 4.246 15 H 0.084 0.916 16 C -0.063 4.063 17 N -0.951 5.951 18 Si 0.983 3.017 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.266 1.266 22 C 0.126 3.874 23 C -0.168 4.168 24 C 0.291 3.709 25 N -0.463 5.463 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.197 0.803 30 H 0.211 0.789 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.027 0.973 34 H 0.015 0.985 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.039 -9.670 -3.947 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.193 3.807 4 C -0.300 4.300 5 C 0.056 3.944 6 N -0.303 5.303 7 C 0.213 3.787 8 O -0.206 6.206 9 C 0.038 3.962 10 H 0.127 0.873 11 C -0.167 4.167 12 C 0.064 3.936 13 N -0.350 5.350 14 C -0.374 4.374 15 H 0.102 0.898 16 C -0.256 4.256 17 N -0.599 5.599 18 Si 0.811 3.189 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.190 1.190 22 C 0.000 4.000 23 C -0.176 4.176 24 C -0.024 4.024 25 N -0.141 5.141 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.137 0.863 29 H 0.214 0.786 30 H 0.227 0.773 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -22.237 -10.586 -3.931 24.939 hybrid contribution 0.164 0.439 0.591 0.754 sum -22.073 -10.147 -3.339 24.522 Atomic orbital electron populations 1.23690 0.73861 1.06549 1.04195 1.86068 1.25582 1.25601 1.85963 1.18928 0.88346 0.86706 0.86691 1.22395 1.03796 0.90152 1.13671 1.23246 0.87197 0.99696 0.84270 1.67630 1.09852 1.29311 1.23525 1.19549 0.84556 0.87874 0.86732 1.86227 1.16474 1.32406 1.85463 1.23513 0.94950 0.80412 0.97319 0.87254 1.22949 0.93686 0.99251 1.00789 1.20931 0.93751 0.92840 0.86125 1.44598 1.37368 1.30976 1.22012 1.19457 1.13960 1.03619 1.00402 0.89793 1.25691 0.98353 1.01929 0.99652 1.70158 1.24188 1.39115 1.26469 0.85017 0.78138 0.78122 0.77659 1.21504 1.21812 1.19041 1.21859 0.91865 0.91357 0.94872 1.15201 0.89978 0.86079 1.26334 1.25185 0.92562 0.92317 0.92315 1.81157 1.09241 1.12028 1.11683 0.89729 0.89563 0.86286 0.78593 0.77295 0.91040 0.88596 0.95522 0.96708 0.94170 0.92893 0.96564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.84 113.37 1.12 1.16 16 2 O -0.32 -5.17 10.01 -88.63 -0.89 -6.05 16 3 C 0.25 4.49 6.73 23.08 0.16 4.64 16 4 C -0.28 -2.93 9.10 22.42 0.20 -2.73 16 5 C 0.21 2.96 11.15 84.58 0.94 3.90 16 6 N -0.58 -14.28 8.66 -308.20 -2.67 -16.95 16 7 C 0.39 11.45 7.50 85.14 0.64 12.09 16 8 O -0.30 -10.53 9.37 -87.83 -0.82 -11.35 16 9 C 0.09 3.55 3.28 31.99 0.11 3.66 16 10 H 0.11 3.96 7.06 -2.39 -0.02 3.94 16 11 C -0.13 -5.05 6.69 31.80 0.21 -4.84 16 12 C 0.19 9.55 5.38 86.74 0.47 10.02 16 13 N -0.62 -33.05 3.39 -691.86 -2.35 -35.40 16 14 C -0.25 -14.00 10.28 84.03 0.86 -13.14 16 15 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 16 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 17 N -0.95 -57.33 10.31 21.65 0.22 -57.11 16 18 Si 0.98 45.79 29.55 68.60 2.03 47.81 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.13 5.56 6.97 86.85 0.61 6.16 16 23 C -0.17 -4.41 5.78 -20.96 -0.12 -4.53 16 24 C 0.29 9.27 14.52 88.33 1.28 10.56 16 25 N -0.46 -16.62 18.54 19.00 0.35 -16.27 16 26 H 0.08 0.08 7.71 -2.38 -0.02 0.06 16 27 H 0.09 0.05 7.71 -2.39 -0.02 0.03 16 28 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.20 0.21 6.45 -2.91 -0.02 0.19 16 30 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.03 1.46 7.38 -2.38 -0.02 1.45 16 34 H 0.01 0.84 7.50 -2.39 -0.02 0.82 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -76.67 322.57 3.91 -72.76 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 1.10 Total: -1.23 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.94 Total: 23.79 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -4.44 Total: -125.73 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.71 Total: -17.41 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -76.67 3.91 -72.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225567293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.735 kcal (2) G-P(sol) polarization free energy of solvation -76.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds