Wall clock time and date at job start Tue Mar 31 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99626 * 2 1 4 4 H 1.48497 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47025 * 299.99592 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99593 * 3 2 1 7 7 C 1.38951 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99555 * 179.97438 * 9 7 2 11 11 O 1.21284 * 119.99821 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99600 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46769 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72341 * 13 12 10 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 12 17 17 C 1.47017 * 125.64654 * 0.02562 * 16 14 13 18 18 C 1.54323 * 107.27145 * 181.02578 * 17 16 14 19 19 C 1.55155 * 102.94441 * 22.19171 * 18 17 16 20 20 F 1.39904 * 111.00224 * 82.57081 * 19 18 17 21 21 C 1.52999 * 111.00924 * 206.38537 * 19 18 17 22 22 O 1.42897 * 109.47263 * 179.97438 * 21 19 18 23 23 C 1.47424 * 125.65050 * 179.71948 * 16 14 13 24 24 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00000 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47210 * 60.00194 * 12 10 9 27 27 H 1.08994 * 109.47121 * 300.00164 * 12 10 9 28 28 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 29 29 H 1.09004 * 109.88403 * 300.44205 * 17 16 14 30 30 H 1.08998 * 109.88458 * 61.60681 * 17 16 14 31 31 H 1.08997 * 110.72387 * 140.55890 * 18 17 16 32 32 H 1.09001 * 110.72309 * 263.82939 * 18 17 16 33 33 H 1.09000 * 109.46830 * 300.00641 * 21 19 18 34 34 H 1.09005 * 109.46597 * 60.00052 * 21 19 18 35 35 H 0.96704 * 114.00031 * 180.02562 * 22 21 19 36 36 H 1.09000 * 110.36665 * 274.74862 * 23 16 14 37 37 H 1.09007 * 110.36498 * 37.06442 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1961 -5.9764 0.0004 14 6 1.7469 -7.2471 0.0064 15 8 0.5514 -7.4693 0.0072 16 7 2.6228 -8.2714 0.0114 17 6 4.0876 -8.1463 0.0115 18 6 4.6696 -9.5754 -0.0082 19 6 3.5033 -10.4176 -0.5894 20 9 3.4837 -10.3499 -1.9867 21 6 3.5857 -11.8698 -0.1148 22 8 2.4984 -12.6141 -0.6677 23 6 2.2706 -9.7029 0.0240 24 1 -0.4851 0.8400 -0.0004 25 1 0.3535 -2.3906 0.0005 26 1 0.6170 -4.9209 -0.8886 27 1 0.6177 -4.9205 0.8913 28 1 3.1497 -5.7991 0.0000 29 1 4.4132 -7.6012 -0.8745 30 1 4.4150 -7.6250 0.9111 31 1 5.5435 -9.6270 -0.6574 32 1 4.9176 -9.9048 1.0009 33 1 4.5292 -12.3061 -0.4426 34 1 3.5301 -11.9000 0.9734 35 1 2.4870 -13.5455 -0.4080 36 1 2.1015 -10.0430 1.0457 37 1 1.3860 -9.8814 -0.5874 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261100193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:40 Heat of formation + Delta-G solvation = -156.784789 kcal Electronic energy + Delta-G solvation = -22876.909543 eV Core-core repulsion = 18989.956794 eV Total energy + Delta-G solvation = -3886.952749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.87590 -40.11312 -38.42967 -37.70328 -36.64669 -34.43303 -33.66299 -32.02196 -31.34485 -29.67653 -27.89352 -25.92162 -24.35505 -23.23277 -20.88990 -19.93464 -19.60402 -18.45520 -18.00182 -17.62557 -17.02042 -16.20041 -15.86487 -15.48200 -15.30234 -15.16533 -14.76330 -14.52263 -14.31589 -14.14703 -13.65282 -13.49141 -13.37652 -13.11418 -12.75609 -12.43361 -12.14978 -11.93368 -11.77597 -11.62625 -11.23147 -11.13674 -11.08117 -10.55562 -10.40404 -10.32087 -10.05173 -9.63965 -8.95116 -8.61901 -8.49737 -8.09088 -6.50514 -3.92501 2.56398 3.10818 3.22948 3.29569 3.34005 3.37265 3.75797 3.85707 3.94606 4.05231 4.14764 4.24110 4.53180 4.67384 4.73767 4.90125 4.92979 5.06936 5.18242 5.27600 5.38371 5.50032 5.62756 5.76142 5.90531 6.01779 6.06590 6.13883 6.75023 7.08392 7.10370 7.47074 7.93502 8.13832 8.46127 8.75328 9.05591 9.40560 9.88327 10.66502 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.045716 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.324830 B =10073.688996 C =10448.266751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.127 3.873 13 N -0.721 5.721 14 C 0.725 3.275 15 O -0.591 6.591 16 N -0.640 5.640 17 C 0.097 3.903 18 C -0.145 4.145 19 C 0.106 3.894 20 F -0.187 7.187 21 C 0.068 3.932 22 O -0.562 6.562 23 C 0.117 3.883 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.407 0.593 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.385 0.615 36 H 0.082 0.918 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.842 -22.269 2.086 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.378 5.378 14 C 0.427 3.573 15 O -0.470 6.470 16 N -0.380 5.380 17 C -0.026 4.026 18 C -0.183 4.183 19 C 0.087 3.913 20 F -0.167 7.167 21 C -0.011 4.011 22 O -0.368 6.368 23 C -0.007 4.007 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.245 0.755 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.100 0.900 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.412 -21.535 1.781 22.845 hybrid contribution 0.429 0.456 0.158 0.646 sum 7.841 -21.079 1.939 22.574 Atomic orbital electron populations 1.69624 1.06011 1.28419 1.49415 1.25332 0.95670 0.99939 0.96843 0.85755 0.79657 0.80831 0.77820 1.19151 1.20610 1.20626 1.19773 0.93470 0.81975 1.48119 0.87637 1.41793 1.09514 1.04439 1.62664 1.19740 0.88274 0.84983 0.85481 1.90483 1.13758 1.86864 1.57372 1.20817 0.91217 0.84787 1.03263 1.44764 1.11340 1.03064 1.78624 1.15295 0.84136 0.79899 0.77993 1.90920 1.13478 1.83829 1.58736 1.47401 1.05697 1.05244 1.79627 1.22020 0.80548 0.97037 1.02988 1.23205 0.97658 0.94152 1.03298 1.22058 0.97456 0.94671 0.77159 1.92906 1.97303 1.97326 1.29155 1.22544 0.90681 0.89995 0.97887 1.86559 1.49027 1.26122 1.75114 1.22519 0.97457 0.79151 1.01593 0.91636 0.76991 0.89904 0.89907 0.75530 0.90657 0.90408 0.88245 0.88332 0.91880 0.91249 0.76770 0.89978 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 13.05 55.50 0.72 -23.34 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 10 C 0.43 10.02 7.85 -10.98 -0.09 9.93 16 11 O -0.60 -15.43 15.24 5.55 0.08 -15.35 16 12 C 0.13 2.46 6.15 -5.19 -0.03 2.43 16 13 N -0.72 -12.94 5.49 -66.41 -0.36 -13.30 16 14 C 0.73 12.93 8.49 -86.92 -0.74 12.19 16 15 O -0.59 -12.43 16.60 5.28 0.09 -12.34 16 16 N -0.64 -8.89 3.32 -176.10 -0.59 -9.47 16 17 C 0.10 1.00 6.15 -3.07 -0.02 0.98 16 18 C -0.14 -1.01 6.23 -24.90 -0.16 -1.17 16 19 C 0.11 0.99 1.37 -88.35 -0.12 0.87 16 20 F -0.19 -2.41 16.95 2.25 0.04 -2.38 16 21 C 0.07 0.42 6.30 37.16 0.23 0.65 16 22 O -0.56 -4.33 13.47 -35.23 -0.47 -4.81 16 23 C 0.12 1.38 6.09 -2.41 -0.01 1.37 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.40 9.57 7.90 -40.82 -0.32 9.25 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.41 7.09 6.42 -40.82 -0.26 6.83 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.43 8.04 -51.93 -0.42 0.02 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 35 H 0.38 0.98 9.12 45.56 0.42 1.40 16 36 H 0.08 0.82 7.99 -51.93 -0.41 0.40 16 37 H 0.09 1.34 8.03 -51.93 -0.42 0.93 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -35.29 323.99 -5.75 -41.04 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -3.88 Total: 13.94 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: -1.17 Total: 19.37 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.28 Total: -59.95 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.30 Total: -32.49 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.29 -5.75 -41.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261100193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.745 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds