Wall clock time and date at job start Tue Mar 31 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99626 * 2 1 4 4 H 1.48497 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47025 * 299.99592 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99593 * 3 2 1 7 7 C 1.38951 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99555 * 179.97438 * 9 7 2 11 11 O 1.21284 * 119.99821 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99600 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46769 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72341 * 13 12 10 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 12 17 17 C 1.47017 * 125.64654 * 0.02562 * 16 14 13 18 18 C 1.54323 * 107.27145 * 181.02578 * 17 16 14 19 19 C 1.55155 * 102.94441 * 22.19171 * 18 17 16 20 20 F 1.39904 * 111.00224 * 82.57081 * 19 18 17 21 21 C 1.52999 * 111.00924 * 206.38537 * 19 18 17 22 22 O 1.42897 * 109.47263 * 179.97438 * 21 19 18 23 23 C 1.47424 * 125.65050 * 179.71948 * 16 14 13 24 24 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00000 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47210 * 60.00194 * 12 10 9 27 27 H 1.08994 * 109.47121 * 300.00164 * 12 10 9 28 28 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 29 29 H 1.09004 * 109.88403 * 300.44205 * 17 16 14 30 30 H 1.08998 * 109.88458 * 61.60681 * 17 16 14 31 31 H 1.08997 * 110.72387 * 140.55890 * 18 17 16 32 32 H 1.09001 * 110.72309 * 263.82939 * 18 17 16 33 33 H 1.09000 * 109.46830 * 300.00641 * 21 19 18 34 34 H 1.09005 * 109.46597 * 60.00052 * 21 19 18 35 35 H 0.96704 * 114.00031 * 180.02562 * 22 21 19 36 36 H 1.09000 * 110.36665 * 274.74862 * 23 16 14 37 37 H 1.09007 * 110.36498 * 37.06442 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1961 -5.9764 0.0004 14 6 1.7469 -7.2471 0.0064 15 8 0.5514 -7.4693 0.0072 16 7 2.6228 -8.2714 0.0114 17 6 4.0876 -8.1463 0.0115 18 6 4.6696 -9.5754 -0.0082 19 6 3.5033 -10.4176 -0.5894 20 9 3.4837 -10.3499 -1.9867 21 6 3.5857 -11.8698 -0.1148 22 8 2.4984 -12.6141 -0.6677 23 6 2.2706 -9.7029 0.0240 24 1 -0.4851 0.8400 -0.0004 25 1 0.3535 -2.3906 0.0005 26 1 0.6170 -4.9209 -0.8886 27 1 0.6177 -4.9205 0.8913 28 1 3.1497 -5.7991 0.0000 29 1 4.4132 -7.6012 -0.8745 30 1 4.4150 -7.6250 0.9111 31 1 5.5435 -9.6270 -0.6574 32 1 4.9176 -9.9048 1.0009 33 1 4.5292 -12.3061 -0.4426 34 1 3.5301 -11.9000 0.9734 35 1 2.4870 -13.5455 -0.4080 36 1 2.1015 -10.0430 1.0457 37 1 1.3860 -9.8814 -0.5874 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261100193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:40 Heat of formation + Delta-G solvation = -186.839016 kcal Electronic energy + Delta-G solvation = -22878.212792 eV Core-core repulsion = 18989.956794 eV Total energy + Delta-G solvation = -3888.255998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.72574 -41.42499 -40.16104 -38.69894 -37.36619 -36.27392 -35.35933 -33.41298 -32.89855 -30.46115 -29.37721 -27.10742 -25.97525 -24.14206 -21.64617 -21.38769 -21.21512 -20.14234 -19.46769 -18.29489 -17.87749 -17.52770 -17.26532 -16.74386 -16.68862 -16.43500 -15.99343 -15.95990 -15.80558 -15.22391 -14.88428 -14.80550 -14.31420 -14.03984 -13.90142 -13.83053 -13.55445 -13.45748 -13.11186 -12.91855 -12.47368 -12.45246 -12.11042 -11.95247 -11.76270 -11.58879 -11.50865 -10.98908 -10.58080 -10.39076 -10.10881 -9.65891 -8.51729 -6.02125 1.33947 1.34782 1.43722 1.57761 1.86589 1.98316 2.27137 2.70386 2.94692 3.14141 3.15353 3.21779 3.27933 3.54952 4.01937 4.07335 4.12659 4.18640 4.38549 4.41028 4.44583 4.54201 4.58689 4.60447 4.78246 4.83924 5.08107 5.17238 5.23771 5.38050 5.84858 5.91016 6.46488 6.79642 6.89604 7.02342 7.34359 7.44114 7.92399 8.65525 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.045716 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.324830 B =10073.688996 C =10448.266751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.435 3.565 11 O -0.623 6.623 12 C 0.140 3.860 13 N -0.720 5.720 14 C 0.720 3.280 15 O -0.630 6.630 16 N -0.639 5.639 17 C 0.085 3.915 18 C -0.128 4.128 19 C 0.098 3.902 20 F -0.213 7.213 21 C 0.070 3.930 22 O -0.594 6.594 23 C 0.110 3.890 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.410 0.590 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.105 0.895 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 -23.228 2.971 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.511 6.511 12 C 0.012 3.988 13 N -0.377 5.377 14 C 0.422 3.578 15 O -0.512 6.512 16 N -0.377 5.377 17 C -0.037 4.037 18 C -0.166 4.166 19 C 0.079 3.921 20 F -0.193 7.193 21 C -0.008 4.008 22 O -0.403 6.403 23 C -0.014 4.014 24 H 0.090 0.910 25 H 0.233 0.767 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.248 0.752 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.256 0.744 36 H 0.123 0.877 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.950 -22.552 2.671 24.410 hybrid contribution -0.048 0.668 -0.125 0.682 sum 8.902 -21.884 2.546 23.762 Atomic orbital electron populations 1.69691 1.07065 1.29622 1.49304 1.26161 0.96547 1.02762 0.95759 0.84789 0.78140 0.76601 0.78306 1.19331 1.19683 1.19573 1.19781 0.92981 0.83435 1.50304 0.89475 1.41837 1.09615 1.04573 1.63356 1.20316 0.88083 0.85772 0.83642 1.90458 1.15081 1.87506 1.58041 1.20627 0.90994 0.83106 1.04114 1.44669 1.11118 1.02976 1.78984 1.15437 0.84178 0.80317 0.77917 1.90883 1.15313 1.84427 1.60542 1.47491 1.07001 1.05237 1.77950 1.22336 0.78323 0.99823 1.03195 1.23257 0.96790 0.90883 1.05659 1.22441 0.96893 0.97145 0.75650 1.92854 1.97371 1.97589 1.31537 1.22652 0.91166 0.87533 0.99448 1.86504 1.49925 1.28009 1.75910 1.22747 0.97794 0.78270 1.02556 0.91044 0.76690 0.89244 0.88778 0.75191 0.91629 0.89109 0.86516 0.84619 0.89631 0.88199 0.74398 0.87718 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 1.00 41.89 29.55 68.60 2.03 43.92 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16 8 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -28.47 5.29 -306.99 -1.62 -30.10 16 10 C 0.43 20.53 7.85 87.66 0.69 21.22 16 11 O -0.62 -32.52 15.24 -3.04 -0.05 -32.57 16 12 C 0.14 5.44 6.15 85.63 0.53 5.97 16 13 N -0.72 -25.92 5.49 -482.30 -2.65 -28.57 16 14 C 0.72 25.85 8.49 179.05 1.52 27.37 16 15 O -0.63 -27.00 16.60 -4.01 -0.07 -27.07 16 16 N -0.64 -17.40 3.32 -829.31 -2.76 -20.15 16 17 C 0.09 1.61 6.15 86.73 0.53 2.15 16 18 C -0.13 -1.36 6.23 31.78 0.20 -1.16 16 19 C 0.10 1.63 1.37 -9.33 -0.01 1.62 16 20 F -0.21 -5.38 16.95 44.97 0.76 -4.62 16 21 C 0.07 0.64 6.30 71.98 0.45 1.10 16 22 O -0.59 -8.08 13.47 -148.98 -2.01 -10.09 16 23 C 0.11 2.51 6.09 86.93 0.53 3.04 16 24 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 26 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 27 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.41 14.28 6.42 -92.71 -0.60 13.69 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 0.49 8.04 -2.39 -0.02 0.47 16 33 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.10 0.31 8.07 -2.38 -0.02 0.29 16 35 H 0.40 1.23 9.12 -74.05 -0.68 0.56 16 36 H 0.10 1.89 7.99 -2.39 -0.02 1.87 16 37 H 0.06 1.80 8.03 -2.38 -0.02 1.78 16 Total: -1.00 -77.78 323.99 -1.22 -79.00 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.87 Total: 35.75 kcal Atomic # 6 Polarization: 37.63 SS G_CDS: 5.72 Total: 43.34 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.74 Total: -127.67 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -2.12 Total: -69.72 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.76 Total: -4.62 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -77.78 -1.22 -79.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261100193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.836 kcal (2) G-P(sol) polarization free energy of solvation -77.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds