Wall clock time and date at job start Tue Mar 31 2020 02:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99678 * 2 1 4 4 H 1.48503 * 109.47128 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47253 * 29.99553 * 3 2 1 6 6 H 1.48494 * 109.47067 * 149.99682 * 3 2 1 7 7 C 1.37868 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00348 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.47109 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00159 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99773 * 179.97438 * 10 9 7 13 13 C 1.47221 * 121.33263 * 180.02562 * 12 10 9 14 14 C 1.52766 * 107.99437 * 115.78161 * 13 12 10 15 15 C 1.50710 * 110.84359 * 47.72288 * 14 13 12 16 16 N 1.32417 * 117.36311 * 159.86332 * 15 14 13 17 17 C 1.32348 * 122.38467 * 179.23161 * 16 15 14 18 18 C 1.48171 * 119.77482 * 179.85874 * 17 16 15 19 19 N 1.34771 * 120.00048 * 359.97438 * 18 17 16 20 20 O 1.21516 * 119.99652 * 179.97438 * 18 17 16 21 21 C 1.39319 * 120.44251 * 359.84107 * 17 16 15 22 22 C 1.38385 * 118.68998 * 0.30989 * 21 17 16 23 23 C 1.38033 * 122.58846 * 339.71649 * 15 14 13 24 24 C 1.46707 * 121.33831 * 0.03469 * 12 10 9 25 25 H 0.97002 * 120.00437 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46957 * 60.00410 * 9 7 2 27 27 H 1.08993 * 109.47408 * 300.00329 * 9 7 2 28 28 H 1.09004 * 109.75809 * 356.15576 * 13 12 10 29 29 H 1.09001 * 109.75417 * 235.40106 * 13 12 10 30 30 H 1.09001 * 109.19846 * 287.37706 * 14 13 12 31 31 H 1.08990 * 109.20517 * 168.08009 * 14 13 12 32 32 H 0.97001 * 119.99890 * 359.97438 * 19 18 17 33 33 H 0.97004 * 119.99729 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.65581 * 180.29325 * 21 17 16 35 35 H 1.08002 * 120.53518 * 180.02562 * 22 21 17 36 36 H 1.08995 * 109.44198 * 344.32766 * 24 12 10 37 37 H 1.08993 * 109.44604 * 104.26501 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0023 11 8 3.2259 -3.5366 0.0021 12 7 5.3390 -2.8609 0.0024 13 6 5.8620 -4.2371 0.0030 14 6 6.6205 -4.4542 -1.3052 15 6 7.5628 -3.3094 -1.5752 16 7 8.5598 -3.5278 -2.4187 17 6 9.4362 -2.5890 -2.7386 18 6 10.5319 -2.8977 -3.6871 19 7 10.6339 -4.1312 -4.2205 20 8 11.3384 -2.0387 -3.9840 21 6 9.3351 -1.3125 -2.1899 22 6 8.3066 -1.0506 -1.3018 23 6 7.4161 -2.0706 -0.9842 24 6 6.3181 -1.7683 0.0023 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6799 0.8912 27 1 3.8752 -0.6802 -0.8887 28 1 5.0361 -4.9451 0.0720 29 1 6.5374 -4.3742 0.8475 30 1 5.9063 -4.5316 -2.1250 31 1 7.1912 -5.3804 -1.2393 32 1 9.9902 -4.8170 -3.9831 33 1 11.3515 -4.3334 -4.8411 34 1 10.0455 -0.5424 -2.4522 35 1 8.1999 -0.0714 -0.8590 36 1 5.8232 -0.8378 -0.2756 37 1 6.7488 -1.6668 0.9983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:56 Heat of formation + Delta-G solvation = -65.080725 kcal Electronic energy + Delta-G solvation = -22302.594261 eV Core-core repulsion = 18850.387324 eV Total energy + Delta-G solvation = -3452.206938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.05761 -40.78468 -39.85756 -37.28663 -35.14097 -34.95688 -34.38731 -33.00924 -32.00259 -30.87712 -27.79140 -26.02882 -24.63758 -24.41175 -23.01243 -21.57441 -19.94209 -19.14163 -19.05022 -18.28180 -17.57459 -17.46349 -16.86951 -16.56206 -16.23242 -16.12848 -15.77057 -15.60341 -15.36805 -14.82277 -14.76562 -14.28157 -14.23354 -13.96951 -13.48023 -13.44488 -13.14986 -13.00052 -12.71997 -12.41160 -12.26453 -11.82404 -11.57969 -11.47813 -10.88291 -10.77632 -10.77591 -10.72169 -10.52928 -9.94053 -9.67745 -8.24306 -6.33368 -0.47141 0.11994 1.40908 1.45742 1.55677 1.58458 1.80229 2.02037 2.31396 2.40399 2.71020 2.98970 3.09263 3.47155 3.61705 3.75381 3.89746 4.01454 4.22077 4.24781 4.29743 4.34990 4.48260 4.64134 4.67433 4.76836 4.87458 4.95057 5.00524 5.06927 5.11535 5.44769 5.47310 5.58884 5.76013 6.21265 6.23510 6.47826 6.67628 6.83584 7.18166 7.26258 7.41058 8.93292 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.003977 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.225051 B = 7038.748912 C = 7855.073311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.219 1.219 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.025 4.025 10 C 0.527 3.473 11 O -0.580 6.580 12 N -0.623 5.623 13 C 0.109 3.891 14 C -0.075 4.075 15 C 0.129 3.871 16 N -0.465 5.465 17 C 0.059 3.941 18 C 0.578 3.422 19 N -0.817 5.817 20 O -0.573 6.573 21 C -0.118 4.118 22 C -0.065 4.065 23 C -0.119 4.119 24 C 0.145 3.855 25 H 0.267 0.733 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.420 0.580 33 H 0.415 0.585 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.112 0.888 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.181 -4.079 -2.743 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.141 1.141 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.064 4.064 10 C 0.318 3.682 11 O -0.458 6.458 12 N -0.357 5.357 13 C -0.013 4.013 14 C -0.113 4.113 15 C -0.009 4.009 16 N -0.177 5.177 17 C -0.081 4.081 18 C 0.361 3.639 19 N -0.380 5.380 20 O -0.453 6.453 21 C -0.139 4.139 22 C -0.090 4.090 23 C -0.122 4.122 24 C 0.023 3.977 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.252 0.748 33 H 0.247 0.753 34 H 0.176 0.824 35 H 0.199 0.801 36 H 0.130 0.870 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 25.130 -4.679 -3.216 25.763 hybrid contribution -0.645 0.773 -0.032 1.008 sum 24.485 -3.906 -3.248 25.006 Atomic orbital electron populations 1.70100 1.08916 1.28398 1.52099 1.26163 0.95766 1.03976 0.93671 0.85601 0.80322 0.76756 0.79576 1.18911 1.21389 1.14131 1.21188 0.91100 0.93647 1.51344 0.95420 1.19619 0.95651 0.90830 1.00346 1.21160 0.81019 0.92562 0.73427 1.90578 1.56155 1.48117 1.50975 1.48222 1.04864 1.08063 1.74557 1.21680 0.98515 0.83454 0.97656 1.20676 0.96039 0.96450 0.98164 1.21043 0.92937 0.94438 0.92489 1.67319 1.02695 1.34532 1.13161 1.21055 0.95790 0.92138 0.99120 1.17975 0.83087 0.83068 0.79766 1.43537 1.34451 1.12297 1.47756 1.90810 1.43525 1.48154 1.62777 1.22242 0.98841 0.97014 0.95773 1.21869 0.91676 1.00412 0.95088 1.21081 0.97947 0.94491 0.98718 1.20762 0.87058 0.90816 0.99099 0.92377 0.90724 0.91667 0.89843 0.88227 0.90704 0.86305 0.74832 0.75253 0.82416 0.80147 0.86989 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 13.96 21.44 0.30 -60.23 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.96 40.23 27.47 68.60 1.88 42.12 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.22 -7.52 6.54 99.48 0.65 -6.87 16 7 C -0.53 -31.38 9.48 25.60 0.24 -31.13 16 8 H 0.03 1.93 7.00 -2.91 -0.02 1.91 16 9 C -0.02 -1.08 2.95 29.10 0.09 -0.99 16 10 C 0.53 21.91 7.71 87.66 0.68 22.58 16 11 O -0.58 -30.02 14.94 -3.05 -0.05 -30.06 16 12 N -0.62 -17.93 2.94 -824.28 -2.42 -20.36 16 13 C 0.11 2.56 6.43 86.16 0.55 3.12 16 14 C -0.07 -1.52 6.09 29.77 0.18 -1.34 16 15 C 0.13 2.73 6.65 42.43 0.28 3.01 16 16 N -0.47 -9.67 9.36 -173.14 -1.62 -11.29 16 17 C 0.06 1.24 6.75 41.97 0.28 1.52 16 18 C 0.58 12.18 8.08 86.88 0.70 12.88 16 19 N -0.82 -11.12 8.86 -175.38 -1.55 -12.68 16 20 O -0.57 -15.54 17.17 -3.77 -0.06 -15.61 16 21 C -0.12 -2.15 9.64 22.57 0.22 -1.93 16 22 C -0.06 -1.00 9.75 22.51 0.22 -0.78 16 23 C -0.12 -2.29 5.83 -19.72 -0.11 -2.40 16 24 C 0.15 2.90 6.09 85.58 0.52 3.42 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.07 2.84 7.17 -2.39 -0.02 2.82 16 27 H 0.07 2.53 7.01 -2.39 -0.02 2.51 16 28 H 0.08 2.34 7.07 -2.38 -0.02 2.32 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.42 4.64 8.16 -92.71 -0.76 3.89 16 33 H 0.41 3.99 8.93 -92.71 -0.83 3.16 16 34 H 0.16 2.58 7.66 -2.91 -0.02 2.56 16 35 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.11 2.18 6.20 -2.39 -0.01 2.16 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -83.60 314.52 0.29 -83.31 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.50 Total: 16.36 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.31 Total: 8.45 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -5.30 Total: -104.56 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.11 Total: -45.67 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.88 Total: 42.12 kcal Total: -83.60 0.29 -83.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.226 kcal (2) G-P(sol) polarization free energy of solvation -83.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds