Wall clock time and date at job start Tue Mar 31 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00196 * 2 1 4 4 H 1.48497 * 109.47282 * 270.00914 * 3 2 1 5 5 H 1.48496 * 109.46670 * 30.00914 * 3 2 1 6 6 H 1.48500 * 109.46947 * 150.00352 * 3 2 1 7 7 C 1.38949 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00300 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00188 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.50690 * 119.99994 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.47329 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00098 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00286 * 5.32493 * 14 13 12 16 16 C 1.50701 * 119.99872 * 185.31955 * 14 13 12 17 17 C 1.50701 * 115.55145 * 305.99616 * 16 14 13 18 18 C 1.38223 * 119.61781 * 292.86013 * 17 16 14 19 19 C 1.38629 * 119.16126 * 180.02562 * 18 17 16 20 20 C 1.38666 * 118.42080 * 0.02562 * 19 18 17 21 21 C 1.38186 * 119.16302 * 359.97438 * 20 19 18 22 22 N 1.31858 * 119.61690 * 113.16076 * 17 16 14 23 23 C 1.52999 * 117.51781 * 91.69483 * 16 14 13 24 24 C 1.53003 * 60.00265 * 107.48244 * 23 16 14 25 25 H 0.97004 * 120.00324 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99574 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.47452 * 59.99488 * 12 10 9 28 28 H 1.09007 * 109.47413 * 299.99648 * 12 10 9 29 29 H 0.97007 * 119.99675 * 0.02562 * 13 12 10 30 30 H 1.08002 * 120.41914 * 0.02562 * 18 17 16 31 31 H 1.08006 * 120.78623 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.41977 * 180.02562 * 20 19 18 33 33 H 1.08006 * 119.61438 * 179.97438 * 21 20 19 34 34 H 1.08999 * 117.50449 * 214.97130 * 23 16 14 35 35 H 1.09007 * 117.49915 * 359.97438 * 23 16 14 36 36 H 1.08994 * 117.49696 * 252.51462 * 24 23 16 37 37 H 1.08990 * 117.49805 * 107.48831 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6525 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1957 -5.9765 -0.0007 14 6 1.7464 -7.2471 0.0002 15 8 0.5581 -7.4703 -0.0959 16 6 2.7205 -8.3907 0.1204 17 6 3.8414 -8.3984 -0.8869 18 6 3.5580 -8.6135 -2.2225 19 6 4.5964 -8.6192 -3.1410 20 6 5.8869 -8.4079 -2.6794 21 6 6.0934 -8.1996 -1.3291 22 7 5.0817 -8.2058 -0.4830 23 6 3.0300 -8.9109 1.5256 24 6 2.1689 -9.7439 0.5739 25 1 -0.4851 0.8401 0.0004 26 1 0.3533 -2.3906 0.0002 27 1 0.6166 -4.9209 -0.8897 28 1 0.6174 -4.9205 0.8904 29 1 3.1494 -5.7992 -0.0011 30 1 2.5405 -8.7751 -2.5466 31 1 4.4048 -8.7842 -4.1910 32 1 6.7199 -8.4053 -3.3668 33 1 7.0956 -8.0347 -0.9616 34 1 4.0442 -9.2587 1.7215 35 1 2.5292 -8.4257 2.3635 36 1 1.1016 -9.8069 0.7857 37 1 2.6167 -10.6396 0.1437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329937838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:13 Heat of formation + Delta-G solvation = -11.958153 kcal Electronic energy + Delta-G solvation = -22034.214881 eV Core-core repulsion = 18584.311512 eV Total energy + Delta-G solvation = -3449.903370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79916 -39.46066 -38.23480 -36.42602 -34.45876 -33.67371 -32.55677 -31.38760 -31.15409 -28.07815 -25.26495 -24.25618 -23.75879 -22.38875 -22.26200 -19.81473 -19.44074 -18.17227 -17.79496 -16.54040 -16.28567 -15.82746 -15.76534 -15.24223 -15.08373 -14.77761 -14.39967 -14.18636 -13.82901 -13.61332 -13.52773 -13.31468 -12.83393 -12.20619 -11.96155 -11.93903 -11.64294 -11.61378 -11.12765 -10.86778 -10.69117 -10.45782 -10.31681 -10.02994 -9.84895 -9.63675 -9.55254 -9.07220 -8.79925 -8.62985 -8.10126 -6.51479 -3.93438 0.91229 1.13703 2.60970 3.11724 3.17761 3.22637 3.29074 3.50556 3.73576 3.82784 4.00940 4.11687 4.50050 4.69660 4.77029 4.79827 4.86785 4.89723 4.95932 5.09905 5.16916 5.30899 5.51812 5.55270 5.68596 5.77802 5.88633 5.93253 5.95865 6.03183 6.04648 6.06866 6.52011 6.65827 7.46106 7.77222 7.85703 7.91914 8.38475 8.46000 9.04719 9.39040 9.87292 10.65471 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.003658 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.357017 B = 7653.396251 C = 8449.375884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.595 6.595 12 C 0.108 3.892 13 N -0.698 5.698 14 C 0.555 3.445 15 O -0.543 6.543 16 C -0.119 4.119 17 C 0.165 3.835 18 C -0.156 4.156 19 C -0.073 4.073 20 C -0.174 4.174 21 C 0.103 3.897 22 N -0.471 5.471 23 C -0.132 4.132 24 C -0.132 4.132 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.413 0.587 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 -18.157 -2.959 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.481 6.481 12 C -0.020 4.020 13 N -0.351 5.351 14 C 0.339 3.661 15 O -0.421 6.421 16 C -0.124 4.124 17 C 0.027 3.973 18 C -0.176 4.176 19 C -0.099 4.099 20 C -0.193 4.193 21 C -0.054 4.054 22 N -0.179 5.179 23 C -0.169 4.169 24 C -0.170 4.170 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.252 0.748 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.175 0.825 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.626 -17.948 -2.123 19.250 hybrid contribution 0.111 1.005 -1.095 1.490 sum 6.737 -16.944 -3.218 18.516 Atomic orbital electron populations 1.69612 1.06015 1.28518 1.49380 1.25317 0.95658 0.99907 0.96786 0.85814 0.79255 0.80492 0.78488 1.20272 1.20773 1.19298 1.19733 0.93464 0.81993 1.48225 0.87699 1.41789 1.09452 1.04436 1.62717 1.19724 0.88314 0.84971 0.85661 1.90512 1.13681 1.86762 1.57139 1.21000 0.91859 0.85831 1.03303 1.45644 1.11856 1.04351 1.73218 1.19093 0.87844 0.82772 0.76363 1.90685 1.16380 1.84671 1.50337 1.19895 0.97018 0.96852 0.98591 1.19862 0.90635 0.95560 0.91235 1.21922 1.00846 1.01169 0.93615 1.21584 0.92520 0.95706 1.00125 1.22175 0.97952 1.01718 0.97494 1.22767 0.97991 0.94895 0.89767 1.67392 0.99205 1.11789 1.39545 1.23009 1.02011 1.01231 0.90654 1.23072 1.01230 0.91446 1.01287 0.91591 0.77045 0.89722 0.89727 0.74833 0.84678 0.84649 0.84680 0.82460 0.87019 0.87860 0.86866 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.81 5.29 -10.97 -0.06 -13.87 16 10 C 0.43 10.09 7.85 -10.99 -0.09 10.00 16 11 O -0.59 -15.76 15.24 5.55 0.08 -15.68 16 12 C 0.11 2.06 6.16 -5.20 -0.03 2.03 16 13 N -0.70 -12.63 5.49 -61.47 -0.34 -12.97 16 14 C 0.55 9.30 7.10 -10.99 -0.08 9.22 16 15 O -0.54 -10.25 16.46 5.56 0.09 -10.16 16 16 C -0.12 -1.62 2.16 -156.81 -0.34 -1.96 16 17 C 0.16 2.19 5.74 -82.59 -0.47 1.72 16 18 C -0.16 -1.85 9.72 -39.44 -0.38 -2.23 16 19 C -0.07 -0.73 10.18 -39.28 -0.40 -1.12 16 20 C -0.17 -1.63 10.11 -39.44 -0.40 -2.02 16 21 C 0.10 1.12 11.18 -17.55 -0.20 0.92 16 22 N -0.47 -6.25 9.81 -9.47 -0.09 -6.34 16 23 C -0.13 -1.51 9.73 -26.73 -0.26 -1.77 16 24 C -0.13 -1.45 9.74 -26.73 -0.26 -1.71 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 27 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.41 7.86 7.28 -40.82 -0.30 7.57 16 30 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 34 H 0.11 1.20 7.95 -51.93 -0.41 0.79 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.11 1.26 7.81 -51.93 -0.41 0.86 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -32.27 332.28 -7.08 -39.35 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -4.33 Total: 17.16 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -3.15 Total: 5.14 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.24 Total: -56.48 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.18 Total: -25.84 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.27 -7.08 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329937838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.396 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds