Wall clock time and date at job start Tue Mar 31 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39630 * 120.15168 * 25.97732 * 3 2 1 5 5 C 1.37939 * 119.84731 * 179.97438 * 4 3 2 6 6 C 1.38362 * 120.15344 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.85172 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47100 * 340.00070 * 7 6 5 9 9 O 1.42901 * 109.47344 * 220.00027 * 7 6 5 10 10 C 1.53004 * 109.47457 * 99.99857 * 7 6 5 11 11 N 1.46895 * 109.47035 * 185.00197 * 10 7 6 12 12 C 1.46906 * 110.99789 * 179.97438 * 11 10 7 13 13 C 1.50703 * 109.47109 * 179.97438 * 12 11 10 14 14 O 1.21296 * 119.99996 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99978 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99848 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00405 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99358 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99517 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00588 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47149 * 89.99828 * 20 18 16 22 22 H 1.48498 * 109.47388 * 209.99797 * 20 18 16 23 23 H 1.48501 * 109.46930 * 330.00192 * 20 18 16 24 24 C 1.38370 * 120.30407 * 0.27770 * 6 5 4 25 25 C 1.37954 * 120.14708 * 359.48609 * 24 6 5 26 26 H 1.07998 * 120.07512 * 359.95385 * 4 3 2 27 27 H 1.08000 * 119.92807 * 179.97438 * 5 4 3 28 28 H 0.96703 * 113.99992 * 300.00142 * 9 7 6 29 29 H 1.08996 * 109.46863 * 65.00039 * 10 7 6 30 30 H 1.09002 * 109.46661 * 305.00216 * 10 7 6 31 31 H 1.00899 * 111.00672 * 56.04786 * 11 10 7 32 32 H 1.08992 * 109.47459 * 299.99826 * 12 11 10 33 33 H 1.09004 * 109.47040 * 59.99976 * 12 11 10 34 34 H 0.97002 * 119.99767 * 359.97438 * 15 13 12 35 35 H 0.96997 * 120.00211 * 180.02562 * 19 18 16 36 36 H 1.08000 * 119.92451 * 179.72673 * 24 6 5 37 37 H 1.07997 * 120.07397 * 180.25116 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -1.0844 -0.5289 5 6 4.6492 -1.0770 -0.5261 6 6 5.3374 0.0026 -0.0014 7 6 6.8443 0.0038 -0.0025 8 1 7.2084 -1.0180 -0.1093 9 8 7.3211 0.5533 1.2276 10 6 7.3529 0.8511 -1.1705 11 7 8.8170 0.7556 -1.2438 12 6 9.3419 1.5579 -2.3568 13 6 10.8433 1.4359 -2.3997 14 8 11.4195 0.7478 -1.5836 15 7 11.5460 2.0914 -3.3447 16 6 12.9119 1.9799 -3.3840 17 1 13.4249 1.3673 -2.6575 18 6 13.6361 2.6553 -4.3588 19 7 14.9454 2.5489 -4.3962 20 14 12.7489 3.7144 -5.6159 21 1 12.6279 5.1009 -5.0979 22 1 13.5191 3.7257 -6.8855 23 1 11.3943 3.1585 -5.8635 24 6 4.6483 1.0789 0.5290 25 6 3.2688 1.0867 0.5282 26 1 2.7339 -1.9277 -0.9388 27 1 5.1934 -1.9158 -0.9345 28 1 7.0351 1.4628 1.3891 29 1 7.0639 1.8909 -1.0180 30 1 6.9179 0.4857 -2.1008 31 1 9.1133 -0.2059 -1.3204 32 1 8.9208 1.1971 -3.2951 33 1 9.0665 2.6028 -2.2129 34 1 11.0852 2.6413 -3.9975 35 1 15.4511 3.0206 -5.0763 36 1 5.1916 1.9164 0.9409 37 1 2.7321 1.9292 0.9388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331970226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:42 Heat of formation + Delta-G solvation = -22.768178 kcal Electronic energy + Delta-G solvation = -20980.133663 eV Core-core repulsion = 17529.761536 eV Total energy + Delta-G solvation = -3450.372128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34124 -38.56709 -37.79243 -36.58531 -34.98503 -33.86648 -32.33336 -31.67196 -31.59222 -29.12400 -26.44549 -24.43071 -23.38224 -23.02459 -21.79643 -19.45416 -19.40384 -18.39608 -17.56874 -16.56560 -16.20950 -15.64362 -15.46390 -15.09621 -14.81146 -14.52012 -14.48361 -14.23827 -14.02248 -13.74747 -13.51776 -13.25660 -13.06855 -12.88843 -12.71126 -12.45768 -12.13268 -11.95636 -11.78112 -11.63243 -11.34790 -11.17214 -10.61415 -10.33807 -9.98743 -9.58683 -9.56684 -9.27830 -8.60963 -8.21908 -8.17177 -6.32207 -3.83748 0.22126 0.80550 2.21718 2.44544 3.00504 3.05355 3.13677 3.34225 3.39525 3.71735 3.83007 4.08746 4.20060 4.29757 4.34237 4.47767 4.71636 4.75973 4.86145 4.92949 5.01419 5.18641 5.21430 5.37158 5.41341 5.56207 5.61166 5.65794 5.75189 5.75469 5.89883 6.03858 6.24905 6.97695 7.02567 7.40508 7.54336 7.56824 8.13297 8.58380 8.93858 9.41045 9.81208 10.80901 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.002460 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.795677 B =11381.530336 C =11850.900442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.255 3.745 3 C -0.034 4.034 4 C -0.067 4.067 5 C -0.110 4.110 6 C -0.081 4.081 7 C 0.147 3.853 8 H 0.112 0.888 9 O -0.535 6.535 10 C 0.032 3.968 11 N -0.659 5.659 12 C 0.048 3.952 13 C 0.449 3.551 14 O -0.562 6.562 15 N -0.591 5.591 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.112 4.112 25 C -0.066 4.066 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.372 0.628 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.352 0.648 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.135 0.865 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.533 -2.599 5.327 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.060 4.060 3 C -0.037 4.037 4 C -0.087 4.087 5 C -0.128 4.128 6 C -0.083 4.083 7 C 0.087 3.913 8 H 0.130 0.870 9 O -0.340 6.340 10 C -0.098 4.098 11 N -0.292 5.292 12 C -0.085 4.085 13 C 0.235 3.765 14 O -0.444 6.444 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.130 4.130 25 C -0.086 4.086 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.220 0.780 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.172 0.828 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.297 -3.108 6.299 25.291 hybrid contribution -0.704 0.959 -2.067 2.385 sum -25.001 -2.149 4.232 25.447 Atomic orbital electron populations 1.81279 1.12097 1.07498 1.08536 1.25744 0.92692 0.93839 0.93748 1.16017 0.84266 0.97643 1.05802 1.21184 0.94217 0.96723 0.96609 1.20996 0.93519 0.98506 0.99744 1.20945 0.97298 0.94083 0.95936 1.20881 0.86524 0.98963 0.84935 0.87045 1.86726 1.76410 1.32885 1.37981 1.22673 0.89495 1.00681 0.96980 1.59975 1.06998 1.16943 1.45306 1.21720 0.94965 0.99400 0.92388 1.19686 0.87973 0.84769 0.84096 1.90581 1.70909 1.42392 1.40501 1.42206 1.07872 1.44421 1.28539 1.19436 0.79519 1.28955 1.15458 0.86253 1.25049 0.95457 0.97902 0.97827 1.69622 1.05094 1.42470 1.34906 0.86662 0.79517 0.81270 0.81849 1.19602 1.20208 1.19564 1.20883 0.93567 0.98549 0.99977 1.21155 0.94149 0.96713 0.96586 0.84791 0.84527 0.78018 0.90442 0.94341 0.82793 0.93793 0.89497 0.79717 0.91608 0.84750 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.57 18.54 41.84 0.78 -3.80 16 2 C 0.26 2.14 15.33 -22.47 -0.34 1.80 16 3 C -0.03 -0.22 5.73 -106.93 -0.61 -0.83 16 4 C -0.07 -0.37 9.76 -39.17 -0.38 -0.75 16 5 C -0.11 -0.62 9.65 -39.65 -0.38 -1.00 16 6 C -0.08 -0.52 4.98 -104.53 -0.52 -1.04 16 7 C 0.15 1.20 3.38 -27.88 -0.09 1.11 16 8 H 0.11 0.92 8.00 -51.93 -0.42 0.51 16 9 O -0.54 -5.37 13.13 -35.23 -0.46 -5.83 16 10 C 0.03 0.30 5.30 -3.82 -0.02 0.27 16 11 N -0.66 -9.25 6.07 -115.06 -0.70 -9.95 16 12 C 0.05 0.74 6.17 -4.97 -0.03 0.71 16 13 C 0.45 9.91 7.82 -10.98 -0.09 9.82 16 14 O -0.56 -14.87 15.78 5.54 0.09 -14.79 16 15 N -0.59 -13.77 5.09 -10.96 -0.06 -13.82 16 16 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 17 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 18 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 19 N -0.88 -25.52 13.96 55.50 0.77 -24.74 16 20 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 24 C -0.11 -0.61 9.30 -39.64 -0.37 -0.97 16 25 C -0.07 -0.36 9.76 -39.17 -0.38 -0.74 16 26 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 27 H 0.14 0.56 8.03 -52.49 -0.42 0.14 16 28 H 0.37 2.47 7.48 45.56 0.34 2.81 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.35 5.19 8.43 -39.29 -0.33 4.86 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.13 0.48 6.76 -52.49 -0.35 0.12 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -35.13 332.71 -6.26 -41.40 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -3.51 Total: 11.49 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -3.47 Total: 0.71 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.80 Total: -52.32 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.38 Total: -20.62 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.13 -6.26 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331970226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.628 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds