Wall clock time and date at job start Tue Mar 31 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39626 * 120.14996 * 296.66589 * 3 2 1 5 5 C 1.37947 * 119.84448 * 179.72123 * 4 3 2 6 6 C 1.38362 * 120.14934 * 0.26455 * 5 4 3 7 7 C 1.50708 * 119.84648 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46915 * 25.00142 * 7 6 5 9 9 O 1.42901 * 109.46832 * 144.99756 * 7 6 5 10 10 C 1.52991 * 109.47298 * 265.00075 * 7 6 5 11 11 N 1.46911 * 109.47175 * 180.02562 * 10 7 6 12 12 C 1.46897 * 111.00044 * 179.97438 * 11 10 7 13 13 C 1.50701 * 109.46806 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00001 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99683 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99879 * 180.02562 * 15 13 12 17 17 H 1.08007 * 120.00301 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00048 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00108 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46842 * 90.00488 * 20 18 16 22 22 H 1.48502 * 109.47061 * 209.99859 * 20 18 16 23 23 H 1.48496 * 109.47306 * 330.00380 * 20 18 16 24 24 C 1.38361 * 120.31099 * 0.02562 * 6 5 4 25 25 C 1.37949 * 120.14316 * 0.02562 * 24 6 5 26 26 H 1.08002 * 120.08162 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.92426 * 180.27702 * 5 4 3 28 28 H 0.96700 * 113.99822 * 60.00428 * 9 7 6 29 29 H 1.08998 * 109.47468 * 299.99642 * 10 7 6 30 30 H 1.09004 * 109.47526 * 60.00150 * 10 7 6 31 31 H 1.00902 * 110.99512 * 56.04255 * 11 10 7 32 32 H 1.08999 * 109.47222 * 300.00329 * 12 11 10 33 33 H 1.08998 * 109.46990 * 59.99794 * 12 11 10 34 34 H 0.97006 * 120.00332 * 359.97438 * 15 13 12 35 35 H 0.97000 * 120.00429 * 179.97438 * 19 18 16 36 36 H 1.07993 * 119.93080 * 179.97438 * 24 6 5 37 37 H 1.08002 * 120.07174 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.5409 1.0789 5 6 4.6490 -0.5422 1.0698 6 6 5.3373 -0.0035 -0.0028 7 6 6.8443 -0.0091 -0.0060 8 1 7.2060 -0.8181 0.6287 9 8 7.3171 -0.2030 -1.3406 10 6 7.3604 1.3283 0.5286 11 7 8.8295 1.3231 0.5250 12 6 9.3617 2.5947 1.0326 13 6 10.8680 2.5517 1.0145 14 8 11.4416 1.5596 0.6173 15 7 11.5776 3.6161 1.4387 16 6 12.9479 3.5772 1.4217 17 1 13.4588 2.6938 1.0680 18 6 13.6795 4.6748 1.8586 19 7 13.0580 5.7498 2.2885 20 14 15.5466 4.6216 1.8361 21 1 16.0405 5.1259 0.5296 22 1 16.0793 5.4742 2.9290 23 1 16.0044 3.2225 2.0317 24 6 4.6485 0.5401 -1.0726 25 6 3.2690 0.5489 -1.0759 26 1 2.7335 -0.9622 1.9165 27 1 5.1929 -0.9648 1.9016 28 1 7.0330 0.4815 -1.9618 29 1 6.9988 2.1373 -0.1060 30 1 6.9998 1.4762 1.5466 31 1 9.1880 1.1236 -0.3969 32 1 9.0134 3.4122 0.4014 33 1 9.0153 2.7515 2.0541 34 1 11.1188 4.4100 1.7554 35 1 13.5687 6.5159 2.5938 36 1 5.1919 0.9593 -1.9064 37 1 2.7325 0.9733 -1.9117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331970231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:44 Heat of formation + Delta-G solvation = -31.516350 kcal Electronic energy + Delta-G solvation = -20937.174242 eV Core-core repulsion = 17486.422765 eV Total energy + Delta-G solvation = -3450.751477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -40.32017 -38.42689 -37.77290 -36.57800 -34.84444 -33.79868 -32.33954 -31.54770 -31.23144 -29.01709 -26.34211 -24.48557 -23.30987 -23.07749 -21.71373 -19.41132 -19.28322 -17.91638 -17.58838 -16.58702 -16.25535 -15.57137 -15.41480 -15.03518 -14.51099 -14.47060 -14.39567 -14.28149 -13.98097 -13.78757 -13.57087 -13.22103 -13.10150 -12.82483 -12.57843 -12.39194 -11.88716 -11.62768 -11.58856 -11.52660 -11.29120 -11.03985 -10.43417 -10.39639 -10.22254 -9.52725 -9.51809 -9.22974 -8.48229 -8.11179 -7.97174 -6.42683 -3.83468 0.26307 0.84715 2.25188 2.48362 3.17397 3.26209 3.32253 3.38129 3.43224 3.87940 3.91639 4.15228 4.19377 4.33021 4.38425 4.62376 4.77909 4.88124 4.93357 5.01862 5.17426 5.22170 5.25338 5.43357 5.54549 5.63875 5.69942 5.76990 5.79348 5.93397 6.09178 6.23725 6.29372 7.05974 7.11278 7.34703 7.54520 7.64291 8.05366 8.60227 9.17077 9.53157 10.04631 10.75036 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.002279 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.659142 B =12281.491306 C =12561.188832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.256 3.744 3 C -0.035 4.035 4 C -0.066 4.066 5 C -0.108 4.108 6 C -0.080 4.080 7 C 0.144 3.856 8 H 0.123 0.877 9 O -0.546 6.546 10 C 0.033 3.967 11 N -0.664 5.664 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.581 6.581 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.114 4.114 25 C -0.066 4.066 26 H 0.135 0.865 27 H 0.139 0.861 28 H 0.370 0.630 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.357 0.643 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.133 0.867 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.632 -7.305 -4.117 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.060 4.060 3 C -0.038 4.038 4 C -0.087 4.087 5 C -0.126 4.126 6 C -0.081 4.081 7 C 0.085 3.915 8 H 0.141 0.859 9 O -0.351 6.351 10 C -0.097 4.097 11 N -0.298 5.298 12 C -0.082 4.082 13 C 0.225 3.775 14 O -0.465 6.465 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.132 4.132 25 C -0.086 4.086 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.218 0.782 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.177 0.823 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.590 -8.637 -3.437 21.684 hybrid contribution 0.510 1.786 -0.656 1.970 sum -19.080 -6.851 -4.093 20.682 Atomic orbital electron populations 1.81269 1.12112 1.08546 1.07560 1.25744 0.92691 0.93726 0.93807 1.16017 0.84255 1.05685 0.97849 1.21194 0.94234 0.96600 0.96656 1.21006 0.93473 0.99550 0.98589 1.20927 0.97250 0.95635 0.94311 1.21020 0.86647 0.99042 0.84794 0.85918 1.86736 1.76636 1.52994 1.18726 1.22624 0.89960 0.95356 1.01796 1.59989 1.04295 1.32720 1.32796 1.21683 0.95233 0.90348 1.00943 1.19788 0.88012 0.84904 0.84754 1.90534 1.71376 1.32817 1.51777 1.41865 1.07015 1.14651 1.56542 1.19710 0.81044 1.01832 1.40279 0.87885 1.25267 1.00749 0.95026 0.96952 1.69608 1.36622 1.04790 1.43338 0.85850 0.82172 0.78432 0.77796 1.20434 1.20937 1.19377 1.20846 0.93587 0.99992 0.98733 1.21136 0.94115 0.96633 0.96732 0.84757 0.84310 0.78192 0.95053 0.89872 0.82275 0.93918 0.89608 0.77476 0.91878 0.84963 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.70 18.54 41.83 0.78 -3.92 16 2 C 0.26 2.23 15.33 -22.47 -0.34 1.89 16 3 C -0.03 -0.23 5.73 -106.93 -0.61 -0.85 16 4 C -0.07 -0.39 9.76 -39.17 -0.38 -0.77 16 5 C -0.11 -0.66 9.66 -39.64 -0.38 -1.04 16 6 C -0.08 -0.55 5.01 -104.53 -0.52 -1.07 16 7 C 0.14 1.26 3.48 -27.88 -0.10 1.16 16 8 H 0.12 1.17 8.05 -51.93 -0.42 0.75 16 9 O -0.55 -5.25 12.47 -35.23 -0.44 -5.69 16 10 C 0.03 0.33 5.37 -3.82 -0.02 0.31 16 11 N -0.66 -9.96 6.13 -115.06 -0.70 -10.67 16 12 C 0.05 0.85 6.17 -4.98 -0.03 0.81 16 13 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 14 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 15 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 16 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 17 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 20 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.11 -0.66 9.31 -39.64 -0.37 -1.03 16 25 C -0.07 -0.38 9.76 -39.17 -0.38 -0.76 16 26 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 27 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.37 2.23 7.38 45.56 0.34 2.57 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.36 5.72 7.82 -39.29 -0.31 5.41 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.13 0.52 6.59 -52.49 -0.35 0.17 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -33.53 334.64 -6.60 -40.13 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -3.53 Total: 11.70 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -3.47 Total: 0.81 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.74 Total: -52.28 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.35 Total: -21.24 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.53 -6.60 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331970231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.609 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds