Wall clock time and date at job start Tue Mar 31 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39626 * 120.14996 * 296.66589 * 3 2 1 5 5 C 1.37947 * 119.84448 * 179.72123 * 4 3 2 6 6 C 1.38362 * 120.14934 * 0.26455 * 5 4 3 7 7 C 1.50708 * 119.84648 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46915 * 25.00142 * 7 6 5 9 9 O 1.42901 * 109.46832 * 144.99756 * 7 6 5 10 10 C 1.52991 * 109.47298 * 265.00075 * 7 6 5 11 11 N 1.46911 * 109.47175 * 180.02562 * 10 7 6 12 12 C 1.46897 * 111.00044 * 179.97438 * 11 10 7 13 13 C 1.50701 * 109.46806 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00001 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99683 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99879 * 180.02562 * 15 13 12 17 17 H 1.08007 * 120.00301 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00048 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00108 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46842 * 90.00488 * 20 18 16 22 22 H 1.48502 * 109.47061 * 209.99859 * 20 18 16 23 23 H 1.48496 * 109.47306 * 330.00380 * 20 18 16 24 24 C 1.38361 * 120.31099 * 0.02562 * 6 5 4 25 25 C 1.37949 * 120.14316 * 0.02562 * 24 6 5 26 26 H 1.08002 * 120.08162 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.92426 * 180.27702 * 5 4 3 28 28 H 0.96700 * 113.99822 * 60.00428 * 9 7 6 29 29 H 1.08998 * 109.47468 * 299.99642 * 10 7 6 30 30 H 1.09004 * 109.47526 * 60.00150 * 10 7 6 31 31 H 1.00902 * 110.99512 * 56.04255 * 11 10 7 32 32 H 1.08999 * 109.47222 * 300.00329 * 12 11 10 33 33 H 1.08998 * 109.46990 * 59.99794 * 12 11 10 34 34 H 0.97006 * 120.00332 * 359.97438 * 15 13 12 35 35 H 0.97000 * 120.00429 * 179.97438 * 19 18 16 36 36 H 1.07993 * 119.93080 * 179.97438 * 24 6 5 37 37 H 1.08002 * 120.07174 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.5409 1.0789 5 6 4.6490 -0.5422 1.0698 6 6 5.3373 -0.0035 -0.0028 7 6 6.8443 -0.0091 -0.0060 8 1 7.2060 -0.8181 0.6287 9 8 7.3171 -0.2030 -1.3406 10 6 7.3604 1.3283 0.5286 11 7 8.8295 1.3231 0.5250 12 6 9.3617 2.5947 1.0326 13 6 10.8680 2.5517 1.0145 14 8 11.4416 1.5596 0.6173 15 7 11.5776 3.6161 1.4387 16 6 12.9479 3.5772 1.4217 17 1 13.4588 2.6938 1.0680 18 6 13.6795 4.6748 1.8586 19 7 13.0580 5.7498 2.2885 20 14 15.5466 4.6216 1.8361 21 1 16.0405 5.1259 0.5296 22 1 16.0793 5.4742 2.9290 23 1 16.0044 3.2225 2.0317 24 6 4.6485 0.5401 -1.0726 25 6 3.2690 0.5489 -1.0759 26 1 2.7335 -0.9622 1.9165 27 1 5.1929 -0.9648 1.9016 28 1 7.0330 0.4815 -1.9618 29 1 6.9988 2.1373 -0.1060 30 1 6.9998 1.4762 1.5466 31 1 9.1880 1.1236 -0.3969 32 1 9.0134 3.4122 0.4014 33 1 9.0153 2.7515 2.0541 34 1 11.1188 4.4100 1.7554 35 1 13.5687 6.5159 2.5938 36 1 5.1919 0.9593 -1.9064 37 1 2.7325 0.9733 -1.9117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331970231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:43 Heat of formation + Delta-G solvation = -57.455538 kcal Electronic energy + Delta-G solvation = -20938.299049 eV Core-core repulsion = 17486.422765 eV Total energy + Delta-G solvation = -3451.876285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86755 -40.09609 -38.63157 -37.31969 -36.19649 -35.53743 -33.25171 -32.93582 -31.99225 -30.02681 -27.69817 -25.95015 -24.07744 -23.75760 -22.41411 -21.06107 -19.92382 -19.88588 -18.36896 -17.69505 -17.26704 -16.87643 -16.37465 -16.15087 -15.77885 -15.53718 -15.42125 -15.12470 -14.89899 -14.85229 -14.37846 -14.30077 -14.11872 -13.81350 -13.50332 -13.44667 -13.10787 -13.00572 -12.91704 -12.66116 -12.39745 -12.14370 -12.10866 -11.91218 -11.48685 -11.12375 -10.31754 -9.99304 -9.95631 -9.76014 -9.27342 -8.44864 -5.93303 -0.26453 0.41923 1.39707 1.43669 1.56322 1.58317 1.87918 2.08185 2.30976 2.79116 2.84455 2.98318 3.22674 3.49247 3.56842 3.86778 3.91114 3.97647 4.13084 4.28690 4.35792 4.41710 4.51354 4.55300 4.61671 4.76759 4.80914 4.96533 5.10650 5.22523 5.33929 5.43074 5.58121 5.84189 5.90416 6.12582 6.41008 6.45636 6.62634 6.84547 7.15073 7.59052 8.14705 8.72424 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.002279 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.659142 B =12281.491306 C =12561.188832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.280 3.720 3 C -0.045 4.045 4 C -0.064 4.064 5 C -0.111 4.111 6 C -0.083 4.083 7 C 0.153 3.847 8 H 0.111 0.889 9 O -0.565 6.565 10 C 0.035 3.965 11 N -0.682 5.682 12 C 0.066 3.934 13 C 0.436 3.564 14 O -0.624 6.624 15 N -0.574 5.574 16 C -0.333 4.333 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.992 3.008 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.114 4.114 25 C -0.063 4.063 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.385 0.615 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.348 0.652 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.397 0.603 35 H 0.277 0.723 36 H 0.153 0.847 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.115 -6.805 -4.197 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.035 4.035 3 C -0.049 4.049 4 C -0.084 4.084 5 C -0.129 4.129 6 C -0.084 4.084 7 C 0.093 3.907 8 H 0.129 0.871 9 O -0.372 6.372 10 C -0.094 4.094 11 N -0.315 5.315 12 C -0.067 4.067 13 C 0.224 3.776 14 O -0.510 6.510 15 N -0.211 5.211 16 C -0.463 4.463 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.196 1.196 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.132 4.132 25 C -0.083 4.083 26 H 0.167 0.833 27 H 0.169 0.831 28 H 0.235 0.765 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.168 0.832 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.112 -8.114 -3.513 21.970 hybrid contribution 0.642 1.590 -0.657 1.836 sum -19.470 -6.524 -4.170 20.953 Atomic orbital electron populations 1.81290 1.13554 1.10452 1.09247 1.25999 0.92882 0.92250 0.92336 1.16138 0.83164 1.06777 0.98817 1.21350 0.94224 0.96059 0.96790 1.21170 0.93569 0.99357 0.98839 1.20804 0.96042 0.96483 0.95115 1.20834 0.87741 0.97795 0.84289 0.87139 1.86705 1.77167 1.54011 1.19357 1.22723 0.86808 0.96896 1.02970 1.59971 1.07325 1.31823 1.32413 1.21538 0.90075 0.92239 1.02823 1.20959 0.90785 0.83436 0.82444 1.90501 1.73155 1.34239 1.53100 1.41939 1.06424 1.15484 1.57286 1.19661 0.82681 1.01748 1.42200 0.90376 1.26027 1.04914 0.94364 0.96028 1.69664 1.38155 1.05096 1.43193 0.84936 0.76929 0.78208 0.78317 1.19628 1.19599 1.19851 1.21062 0.93614 0.99548 0.98950 1.21323 0.94206 0.96008 0.96785 0.83345 0.83101 0.76480 0.93112 0.88942 0.83220 0.91407 0.87683 0.76930 0.91326 0.82991 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.37 18.54 19.00 0.35 -10.01 16 2 C 0.28 4.59 15.33 88.34 1.35 5.95 16 3 C -0.05 -0.53 5.73 -21.36 -0.12 -0.65 16 4 C -0.06 -0.62 9.76 22.54 0.22 -0.40 16 5 C -0.11 -1.11 9.66 22.23 0.21 -0.89 16 6 C -0.08 -0.94 5.01 -19.80 -0.10 -1.04 16 7 C 0.15 2.37 3.48 29.85 0.10 2.48 16 8 H 0.11 1.97 8.05 -2.38 -0.02 1.96 16 9 O -0.56 -9.91 12.47 -148.98 -1.86 -11.77 16 10 C 0.04 0.62 5.37 86.30 0.46 1.09 16 11 N -0.68 -19.44 6.13 -517.93 -3.17 -22.61 16 12 C 0.07 2.08 6.17 85.56 0.53 2.61 16 13 C 0.44 20.24 7.82 87.66 0.69 20.93 16 14 O -0.62 -34.24 15.78 -3.04 -0.05 -34.29 16 15 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 16 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 17 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 18 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 19 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 20 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C -0.11 -1.01 9.31 22.23 0.21 -0.80 16 25 C -0.06 -0.58 9.76 22.54 0.22 -0.36 16 26 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 27 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 28 H 0.39 3.78 7.38 -74.06 -0.55 3.23 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.35 10.89 7.82 -89.69 -0.70 10.19 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.40 18.83 7.90 -92.70 -0.73 18.10 16 35 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.15 0.69 6.59 -2.91 -0.02 0.67 16 37 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -73.13 334.64 0.18 -72.95 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.84 Total: 29.71 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.06 Total: 10.70 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -4.16 Total: -111.87 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.91 Total: -46.06 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -73.13 0.18 -72.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331970231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.498 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds