Wall clock time and date at job start Tue Mar 31 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47125 * 240.00412 * 3 2 1 5 5 H 1.48508 * 109.46668 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47356 * 119.99567 * 3 2 1 7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 H 1.08999 * 110.26330 * 299.40099 * 16 14 13 18 18 C 1.54341 * 110.29433 * 177.24579 * 16 14 13 19 19 C 1.54364 * 102.38856 * 267.41018 * 18 16 14 20 20 C 1.51221 * 105.12027 * 333.70377 * 19 18 16 21 21 C 1.38741 * 130.69419 * 197.15887 * 20 19 18 22 22 C 1.38579 * 118.56022 * 179.97438 * 21 20 19 23 23 C 1.38218 * 118.98548 * 359.97438 * 22 21 20 24 24 N 1.31687 * 120.80779 * 0.02562 * 23 22 21 25 25 C 1.32300 * 122.02916 * 0.02562 * 24 23 22 26 26 H 0.96996 * 119.99832 * 0.02562 * 1 2 3 27 27 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 29 29 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 30 30 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 31 31 H 1.08996 * 110.82217 * 25.63455 * 18 16 14 32 32 H 1.09002 * 110.81936 * 149.18271 * 18 16 14 33 33 H 1.09003 * 110.31048 * 214.79773 * 19 18 16 34 34 H 1.08997 * 110.39642 * 92.66482 * 19 18 16 35 35 H 1.08002 * 120.72072 * 359.94777 * 21 20 19 36 36 H 1.08000 * 120.50254 * 180.02562 * 22 21 20 37 37 H 1.08005 * 119.59828 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9765 0.0007 14 6 1.7466 -7.2471 0.0009 15 8 0.5542 -7.4687 -0.0001 16 6 2.7259 -8.3925 0.0010 17 1 3.3528 -8.3533 -0.8898 18 6 1.9748 -9.7390 0.0708 19 6 1.9280 -10.0139 1.5890 20 6 3.1224 -9.2824 2.1593 21 6 3.7654 -9.4149 3.3815 22 6 4.8555 -8.6020 3.6482 23 6 5.2625 -7.6919 2.6909 24 7 4.6281 -7.5934 1.5411 25 6 3.5831 -8.3503 1.2493 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 -0.0002 28 1 0.6175 -4.9205 -0.8903 29 1 0.6168 -4.9208 0.8897 30 1 3.1495 -5.7991 0.0018 31 1 0.9684 -9.6428 -0.3367 32 1 2.5309 -10.5201 -0.4476 33 1 2.0116 -11.0833 1.7826 34 1 1.0050 -9.6234 2.0176 35 1 3.4235 -10.1358 4.1095 36 1 5.3796 -8.6791 4.5894 37 1 6.1112 -7.0537 2.8882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345658460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:53 Heat of formation + Delta-G solvation = -65.958585 kcal Electronic energy + Delta-G solvation = -22153.851109 eV Core-core repulsion = 18701.606105 eV Total energy + Delta-G solvation = -3452.245004 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12358 -40.72235 -39.87017 -36.98098 -36.25275 -35.34848 -33.67693 -33.38921 -30.49693 -30.06047 -28.51124 -26.40725 -24.47671 -23.46377 -22.41500 -21.41015 -21.00316 -20.07653 -18.91091 -17.81566 -17.42290 -17.16808 -16.99826 -16.68366 -16.43709 -16.07895 -15.74678 -15.44048 -15.25928 -14.63952 -14.38701 -14.27649 -13.95833 -13.84087 -13.56211 -13.51757 -12.97656 -12.91146 -12.69842 -12.49511 -12.22393 -12.14281 -12.05603 -11.58936 -11.29457 -10.67362 -10.59454 -10.29905 -10.22883 -10.11006 -9.69814 -8.52972 -6.03575 0.06660 0.32906 1.36113 1.41070 1.44953 1.52286 1.87785 1.98611 2.29978 2.78831 2.96627 3.08146 3.13671 3.36920 3.69213 3.81298 3.96230 4.07850 4.12876 4.22106 4.29742 4.34879 4.38081 4.46698 4.62453 4.63843 4.83243 4.96390 5.08371 5.15913 5.22449 5.23719 5.32781 5.36114 5.75707 5.88922 6.40230 6.47888 7.00086 7.01160 7.06555 7.40618 7.91884 8.63793 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023700 B = 0.003547 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.158137 B = 7891.097432 C = 8666.185111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.430 3.570 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.707 5.707 14 C 0.525 3.475 15 O -0.566 6.566 16 C -0.059 4.059 17 H 0.126 0.874 18 C -0.098 4.098 19 C -0.075 4.075 20 C -0.147 4.147 21 C -0.071 4.071 22 C -0.160 4.160 23 C 0.082 3.918 24 N -0.505 5.505 25 C 0.091 3.909 26 H 0.281 0.719 27 H 0.399 0.601 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.413 0.587 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -20.804 5.504 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.217 3.783 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.360 5.360 14 C 0.311 3.689 15 O -0.445 6.445 16 C -0.081 4.081 17 H 0.143 0.857 18 C -0.135 4.135 19 C -0.113 4.113 20 C -0.149 4.149 21 C -0.096 4.096 22 C -0.179 4.179 23 C -0.075 4.075 24 N -0.213 5.213 25 C -0.046 4.046 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.183 0.817 36 H 0.189 0.811 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.019 -20.144 4.887 21.328 hybrid contribution 0.048 0.866 0.532 1.017 sum 5.066 -19.279 5.420 20.657 Atomic orbital electron populations 1.69672 1.07005 1.29772 1.49086 1.26136 0.96551 1.02650 0.95622 0.84925 0.77751 0.76163 0.79124 1.19459 1.19388 1.19510 1.19706 0.92952 0.83585 1.50688 0.89731 1.41820 1.09528 1.04528 1.63420 1.20426 0.88156 0.85976 0.83785 1.90492 1.15235 1.87475 1.57855 1.20812 0.91691 0.84104 1.04171 1.45829 1.11541 1.04836 1.73778 1.20668 0.89423 0.83692 0.75101 1.90645 1.17390 1.84924 1.51574 1.20867 0.94593 0.95099 0.97512 0.85663 1.22327 1.01807 0.92583 0.96818 1.21025 0.94176 1.01480 0.94577 1.21816 0.98744 0.98788 0.95521 1.21508 0.94012 0.98718 0.95383 1.22490 0.97763 0.96002 1.01645 1.23089 0.98916 0.97288 0.88255 1.66765 1.07961 1.24194 1.22409 1.21480 0.93076 0.93714 0.96375 0.90978 0.76693 0.88301 0.89167 0.74872 0.88755 0.87107 0.87045 0.90430 0.81689 0.81096 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 3 Si 1.00 42.41 29.55 68.60 2.03 44.43 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 8 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -29.01 5.29 -306.99 -1.62 -30.63 16 10 C 0.43 21.01 7.85 87.66 0.69 21.70 16 11 O -0.62 -34.35 15.24 -3.05 -0.05 -34.40 16 12 C 0.12 4.71 6.15 85.63 0.53 5.24 16 13 N -0.71 -26.12 5.46 -466.78 -2.55 -28.66 16 14 C 0.52 17.26 7.17 87.66 0.63 17.88 16 15 O -0.57 -20.61 15.45 -3.03 -0.05 -20.65 16 16 C -0.06 -1.48 3.27 -11.58 -0.04 -1.52 16 17 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 18 C -0.10 -1.80 6.40 31.51 0.20 -1.59 16 19 C -0.08 -1.30 6.76 30.48 0.21 -1.10 16 20 C -0.15 -3.15 6.16 -19.59 -0.12 -3.27 16 21 C -0.07 -1.21 10.17 22.47 0.23 -0.98 16 22 C -0.16 -2.73 10.12 22.35 0.23 -2.50 16 23 C 0.08 1.89 11.18 84.71 0.95 2.84 16 24 N -0.50 -14.84 10.35 -182.98 -1.89 -16.73 16 25 C 0.09 2.43 6.51 42.72 0.28 2.71 16 26 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.40 19.84 7.90 -92.70 -0.73 19.11 16 28 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 30 H 0.41 16.24 7.39 -92.71 -0.69 15.56 16 31 H 0.09 1.93 6.93 -2.39 -0.02 1.92 16 32 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.59 323.35 0.91 -70.67 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -0.29 Total: 44.02 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 5.05 Total: 20.98 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.78 Total: -125.04 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.09 Total: -55.06 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -71.59 0.91 -70.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345658460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.712 kcal (2) G-P(sol) polarization free energy of solvation -71.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds