Wall clock time and date at job start Tue Mar 31 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39720 * 119.59322 * 303.60993 * 3 2 1 5 5 C 1.37975 * 119.20138 * 180.02562 * 4 3 2 6 6 C 1.40234 * 118.40477 * 359.97438 * 5 4 3 7 7 C 1.47668 * 120.44663 * 179.97438 * 6 5 4 8 8 O 1.21579 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00468 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00303 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47394 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46653 * 59.99834 * 11 10 9 13 13 O 1.42899 * 109.47148 * 300.00039 * 11 10 9 14 14 C 1.52999 * 109.47269 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.46836 * 185.00207 * 14 11 10 16 16 C 1.36938 * 119.99894 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00147 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46981 * 59.99790 * 20 18 16 22 22 H 1.48497 * 109.47079 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46943 * 299.99874 * 20 18 16 24 24 C 1.39666 * 119.11544 * 359.97438 * 6 5 4 25 25 N 1.31482 * 120.70955 * 0.02562 * 24 6 5 26 26 H 4.51262 * 14.17504 * 0.02562 * 4 2 1 27 27 H 1.08000 * 120.40079 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.79706 * 179.72654 * 5 4 3 29 29 H 0.97001 * 119.99457 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.46917 * 299.99925 * 10 9 7 31 31 H 1.09000 * 109.47409 * 59.99487 * 10 9 7 32 32 H 0.96699 * 113.99682 * 300.00311 * 13 11 10 33 33 H 1.08994 * 109.47005 * 304.99816 * 14 11 10 34 34 H 1.09002 * 109.47137 * 64.99793 * 14 11 10 35 35 H 0.97002 * 120.00335 * 359.97438 * 15 14 11 36 36 H 0.97002 * 120.00207 * 180.02562 * 19 18 16 37 37 H 1.08000 * 119.64408 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2963 -0.6716 1.0118 5 6 4.6760 -0.6653 1.0043 6 6 5.3343 0.0203 -0.0268 7 6 6.8096 0.0566 -0.0784 8 8 7.4619 -0.5107 0.7765 9 7 7.4332 0.7186 -1.0731 10 6 8.8968 0.7542 -1.1246 11 6 9.3448 1.5639 -2.3430 12 1 8.9592 2.5805 -2.2653 13 8 8.8411 0.9529 -3.5325 14 6 10.8734 1.6016 -2.3963 15 7 11.3024 2.4744 -3.4919 16 6 12.6368 2.6630 -3.7347 17 1 13.3730 2.1687 -3.1181 18 6 13.0433 3.4896 -4.7731 19 7 12.1463 4.0916 -5.5247 20 14 14.8637 3.7475 -5.1037 21 1 15.5002 2.4422 -5.4139 22 1 15.0319 4.6664 -6.2580 23 1 15.5061 4.3384 -3.9023 24 6 4.5760 0.6684 -1.0044 25 7 3.2621 0.6399 -0.9633 26 1 -1.0500 -0.0007 0.0002 27 1 2.7564 -1.1898 1.7905 28 1 5.2355 -1.1727 1.7762 29 1 6.9127 1.1716 -1.7550 30 1 9.2810 1.2198 -0.2171 31 1 9.2825 -0.2624 -1.2026 32 1 9.1440 0.0445 -3.6665 33 1 11.2605 1.9860 -1.4527 34 1 11.2561 0.5946 -2.5628 35 1 10.6412 2.9181 -4.0459 36 1 12.4303 4.6690 -6.2507 37 1 5.0742 1.1993 -1.8021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497092989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:19 Heat of formation + Delta-G solvation = 19.331180 kcal Electronic energy + Delta-G solvation = -21000.390496 eV Core-core repulsion = 17551.843934 eV Total energy + Delta-G solvation = -3448.546563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99917 -39.41632 -37.66406 -34.67026 -34.31453 -34.04644 -32.96191 -31.58464 -31.09929 -29.07085 -26.12740 -24.73175 -24.02915 -22.62357 -21.53118 -20.92126 -19.80703 -18.36777 -17.29151 -17.14159 -16.48928 -16.11592 -16.05737 -15.49470 -15.12136 -14.91000 -14.49813 -14.32281 -13.99797 -13.72758 -13.51164 -13.07978 -12.96615 -12.76198 -12.38072 -11.92816 -11.70032 -11.34225 -10.98861 -10.81855 -10.68864 -10.53404 -10.40721 -10.22899 -9.92545 -9.82952 -9.55978 -9.41798 -9.16993 -8.92194 -6.96642 -5.78059 -3.08051 -0.10471 0.74819 2.10607 2.15214 2.86073 2.89214 3.40853 3.43104 3.47372 3.48620 3.58341 4.10973 4.29854 4.41502 4.51303 4.57765 4.64045 4.68405 4.80931 5.05912 5.17156 5.24507 5.53098 5.56023 5.56836 5.58675 5.73621 5.89245 6.01964 6.13400 6.24649 6.47228 6.62748 6.94815 7.24826 7.32579 7.66023 7.86502 7.94899 8.39930 9.51560 10.07609 10.43156 11.44150 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038237 B = 0.002378 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.095857 B =11771.042958 C =12381.501484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.154 4.154 3 C 0.246 3.754 4 C -0.153 4.153 5 C -0.014 4.014 6 C -0.179 4.179 7 C 0.561 3.439 8 O -0.536 6.536 9 N -0.713 5.713 10 C 0.089 3.911 11 C 0.088 3.912 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.128 3.872 15 N -0.726 5.726 16 C -0.246 4.246 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.144 3.856 25 N -0.471 5.471 26 H 0.231 0.769 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.405 0.595 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.374 0.626 33 H 0.029 0.971 34 H 0.024 0.976 35 H 0.389 0.611 36 H 0.256 0.744 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.444 -10.079 12.988 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.112 3.888 4 C -0.173 4.173 5 C -0.040 4.040 6 C -0.185 4.185 7 C 0.346 3.654 8 O -0.414 6.414 9 N -0.364 5.364 10 C -0.035 4.035 11 C 0.028 3.972 12 H 0.124 0.876 13 O -0.357 6.357 14 C -0.001 4.001 15 N -0.371 5.371 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.016 4.016 25 N -0.179 5.179 26 H 0.248 0.752 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.242 0.758 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.221 0.779 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.495 -9.460 12.868 26.779 hybrid contribution 1.215 -0.376 -0.021 1.272 sum -20.281 -9.836 12.847 25.944 Atomic orbital electron populations 1.24997 0.95661 0.96731 0.97392 1.19267 0.91033 1.02754 1.02419 1.16764 0.88254 0.93006 0.90797 1.22039 0.94393 1.01052 0.99836 1.21689 0.93548 0.92859 0.95895 1.21154 0.94781 1.03480 0.99044 1.17935 0.86566 0.79080 0.81778 1.90802 1.66792 1.45017 1.38766 1.45838 1.08193 1.54098 1.28302 1.22180 0.78987 1.01948 1.00388 1.22422 0.95456 0.96704 0.82629 0.87583 1.86582 1.73765 1.32434 1.42964 1.21192 0.90420 0.95210 0.93305 1.42225 1.05184 1.54630 1.35012 1.19169 0.83524 1.23251 1.11720 0.91240 1.24767 0.97650 1.00028 0.98380 1.69661 1.31998 1.34539 1.21588 0.86246 0.84850 0.77549 0.77383 1.21242 1.21638 1.21228 1.23037 0.88725 0.93742 0.96054 1.67773 1.09702 1.17170 1.23245 0.75196 0.83499 0.82754 0.75838 0.90035 0.90689 0.77900 0.95321 0.95873 0.77705 0.93385 0.81474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 19.25 29.55 0.57 -0.24 16 2 C -0.15 -1.39 13.43 -38.84 -0.52 -1.92 16 3 C 0.25 2.47 6.59 -84.91 -0.56 1.91 16 4 C -0.15 -1.23 9.77 -39.12 -0.38 -1.61 16 5 C -0.01 -0.12 9.70 -38.93 -0.38 -0.50 16 6 C -0.18 -1.82 5.89 -104.76 -0.62 -2.44 16 7 C 0.56 6.74 7.77 -12.41 -0.10 6.65 16 8 O -0.54 -8.13 16.41 5.30 0.09 -8.04 16 9 N -0.71 -7.77 5.40 -61.31 -0.33 -8.10 16 10 C 0.09 1.09 5.34 -4.04 -0.02 1.06 16 11 C 0.09 1.27 3.08 -26.73 -0.08 1.19 16 12 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 13 O -0.55 -8.22 13.03 -35.23 -0.46 -8.68 16 14 C 0.13 2.39 5.90 -4.04 -0.02 2.36 16 15 N -0.73 -18.07 5.55 -59.91 -0.33 -18.40 16 16 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.14 1.40 10.70 -17.17 -0.18 1.22 16 25 N -0.47 -5.25 10.26 -10.78 -0.11 -5.36 16 26 H 0.23 0.43 7.80 -54.09 -0.42 0.01 16 27 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.15 1.22 7.73 -52.49 -0.41 0.82 16 29 H 0.41 3.77 6.40 -40.82 -0.26 3.51 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.37 4.58 9.05 45.56 0.41 5.00 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.17 1.26 6.40 -52.49 -0.34 0.92 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -35.18 337.46 -6.31 -41.49 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -3.41 Total: 11.88 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.54 Total: 0.27 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.05 Total: -59.33 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.37 Total: -16.72 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.18 -6.31 -41.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497092989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.823 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds