Wall clock time and date at job start Tue Mar 31 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39720 * 119.59322 * 303.60993 * 3 2 1 5 5 C 1.37975 * 119.20138 * 180.02562 * 4 3 2 6 6 C 1.40234 * 118.40477 * 359.97438 * 5 4 3 7 7 C 1.47668 * 120.44663 * 179.97438 * 6 5 4 8 8 O 1.21579 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00468 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00303 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47394 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46653 * 59.99834 * 11 10 9 13 13 O 1.42899 * 109.47148 * 300.00039 * 11 10 9 14 14 C 1.52999 * 109.47269 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.46836 * 185.00207 * 14 11 10 16 16 C 1.36938 * 119.99894 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00147 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46981 * 59.99790 * 20 18 16 22 22 H 1.48497 * 109.47079 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46943 * 299.99874 * 20 18 16 24 24 C 1.39666 * 119.11544 * 359.97438 * 6 5 4 25 25 N 1.31482 * 120.70955 * 0.02562 * 24 6 5 26 26 H 4.51262 * 14.17504 * 0.02562 * 4 2 1 27 27 H 1.08000 * 120.40079 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.79706 * 179.72654 * 5 4 3 29 29 H 0.97001 * 119.99457 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.46917 * 299.99925 * 10 9 7 31 31 H 1.09000 * 109.47409 * 59.99487 * 10 9 7 32 32 H 0.96699 * 113.99682 * 300.00311 * 13 11 10 33 33 H 1.08994 * 109.47005 * 304.99816 * 14 11 10 34 34 H 1.09002 * 109.47137 * 64.99793 * 14 11 10 35 35 H 0.97002 * 120.00335 * 359.97438 * 15 14 11 36 36 H 0.97002 * 120.00207 * 180.02562 * 19 18 16 37 37 H 1.08000 * 119.64408 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2963 -0.6716 1.0118 5 6 4.6760 -0.6653 1.0043 6 6 5.3343 0.0203 -0.0268 7 6 6.8096 0.0566 -0.0784 8 8 7.4619 -0.5107 0.7765 9 7 7.4332 0.7186 -1.0731 10 6 8.8968 0.7542 -1.1246 11 6 9.3448 1.5639 -2.3430 12 1 8.9592 2.5805 -2.2653 13 8 8.8411 0.9529 -3.5325 14 6 10.8734 1.6016 -2.3963 15 7 11.3024 2.4744 -3.4919 16 6 12.6368 2.6630 -3.7347 17 1 13.3730 2.1687 -3.1181 18 6 13.0433 3.4896 -4.7731 19 7 12.1463 4.0916 -5.5247 20 14 14.8637 3.7475 -5.1037 21 1 15.5002 2.4422 -5.4139 22 1 15.0319 4.6664 -6.2580 23 1 15.5061 4.3384 -3.9023 24 6 4.5760 0.6684 -1.0044 25 7 3.2621 0.6399 -0.9633 26 1 -1.0500 -0.0007 0.0002 27 1 2.7564 -1.1898 1.7905 28 1 5.2355 -1.1727 1.7762 29 1 6.9127 1.1716 -1.7550 30 1 9.2810 1.2198 -0.2171 31 1 9.2825 -0.2624 -1.2026 32 1 9.1440 0.0445 -3.6665 33 1 11.2605 1.9860 -1.4527 34 1 11.2561 0.5946 -2.5628 35 1 10.6412 2.9181 -4.0459 36 1 12.4303 4.6690 -6.2507 37 1 5.0742 1.1993 -1.8021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497092989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:18 Heat of formation + Delta-G solvation = -9.034616 kcal Electronic energy + Delta-G solvation = -21001.620530 eV Core-core repulsion = 17551.843934 eV Total energy + Delta-G solvation = -3449.776596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78080 -40.33457 -38.90147 -36.11300 -35.48539 -34.92397 -33.67286 -33.21807 -32.07443 -30.41728 -27.42861 -25.90964 -24.77958 -24.22031 -22.77656 -21.91340 -20.41004 -19.41990 -19.02938 -18.11904 -17.43170 -17.20747 -16.86773 -16.43547 -16.42784 -16.08951 -15.76670 -15.39932 -15.17478 -14.91650 -14.64790 -14.29098 -14.17030 -13.85688 -13.69802 -13.26529 -12.95998 -12.71498 -12.33892 -12.20217 -11.98544 -11.91881 -11.80207 -11.47547 -11.11707 -10.99465 -10.92386 -10.64716 -10.30759 -9.92531 -9.00651 -7.94495 -5.23921 -0.81468 0.07419 1.37461 1.47987 1.51001 1.57195 1.60645 1.93048 2.12448 2.56431 2.86083 2.89202 3.36207 3.43139 3.47232 3.59248 3.60978 3.71763 3.91020 4.02205 4.02894 4.21640 4.40436 4.48966 4.61951 4.64283 4.74113 4.91151 4.95273 5.01636 5.20366 5.24846 5.39713 5.48563 6.26529 6.35380 6.43364 6.63026 6.80301 7.01946 7.33761 8.09482 8.32045 9.28463 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038237 B = 0.002378 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.095857 B =11771.042958 C =12381.501484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.219 4.219 3 C 0.236 3.764 4 C -0.147 4.147 5 C -0.014 4.014 6 C -0.192 4.192 7 C 0.565 3.435 8 O -0.571 6.571 9 N -0.704 5.704 10 C 0.102 3.898 11 C 0.107 3.893 12 H 0.102 0.898 13 O -0.563 6.563 14 C 0.122 3.878 15 N -0.740 5.740 16 C -0.249 4.249 17 H 0.077 0.923 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.277 1.277 24 C 0.145 3.855 25 N -0.500 5.500 26 H 0.272 0.728 27 H 0.175 0.825 28 H 0.163 0.837 29 H 0.414 0.586 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.386 0.614 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.614 -10.943 13.960 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.220 4.220 3 C 0.102 3.898 4 C -0.166 4.166 5 C -0.040 4.040 6 C -0.197 4.197 7 C 0.352 3.648 8 O -0.451 6.451 9 N -0.356 5.356 10 C -0.023 4.023 11 C 0.047 3.953 12 H 0.120 0.880 13 O -0.369 6.369 14 C -0.005 4.005 15 N -0.383 5.383 16 C -0.381 4.381 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.618 5.618 20 Si 0.804 3.196 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.203 1.203 24 C -0.015 4.015 25 N -0.208 5.208 26 H 0.288 0.712 27 H 0.192 0.808 28 H 0.181 0.819 29 H 0.252 0.748 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.209 0.791 36 H 0.060 0.940 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.675 -10.356 13.864 28.524 hybrid contribution 1.414 -0.166 -0.267 1.449 sum -21.261 -10.522 13.597 27.342 Atomic orbital electron populations 1.26006 0.96352 0.93572 0.94376 1.19646 0.91620 1.05509 1.05190 1.17154 0.89241 0.92603 0.90781 1.22280 0.93973 1.00453 0.99897 1.21877 0.94069 0.92400 0.95644 1.21027 0.93558 1.04974 1.00175 1.18135 0.87206 0.78288 0.81151 1.90781 1.67622 1.46642 1.40069 1.45721 1.07684 1.53834 1.28367 1.21931 0.79772 1.01624 0.98969 1.22113 0.92569 0.97084 0.83562 0.88047 1.86563 1.73696 1.33483 1.43201 1.21414 0.93432 0.94241 0.91443 1.42417 1.04092 1.55525 1.36291 1.19613 0.85081 1.22238 1.11169 0.90520 1.25606 1.01884 1.00592 0.98795 1.69822 1.33885 1.35765 1.22348 0.85192 0.79925 0.77462 0.77041 1.20362 1.22220 1.20332 1.23231 0.88519 0.93496 0.96226 1.67793 1.10204 1.18428 1.24401 0.71215 0.80778 0.81948 0.74813 0.90042 0.90261 0.76525 0.94724 0.95001 0.79134 0.93994 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 19.25 74.32 1.43 0.61 16 2 C -0.22 -3.68 13.43 30.02 0.40 -3.28 16 3 C 0.24 4.61 6.59 40.58 0.27 4.88 16 4 C -0.15 -2.20 9.77 22.57 0.22 -1.98 16 5 C -0.01 -0.24 9.70 22.69 0.22 -0.02 16 6 C -0.19 -3.82 5.89 -19.96 -0.12 -3.93 16 7 C 0.56 13.28 7.77 86.73 0.67 13.96 16 8 O -0.57 -17.09 16.41 -3.96 -0.07 -17.15 16 9 N -0.70 -14.72 5.40 -466.15 -2.52 -17.24 16 10 C 0.10 2.36 5.34 86.38 0.46 2.82 16 11 C 0.11 3.00 3.08 30.59 0.09 3.10 16 12 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 13 O -0.56 -16.22 13.03 -148.98 -1.94 -18.16 16 14 C 0.12 4.47 5.90 86.38 0.51 4.98 16 15 N -0.74 -36.84 5.55 -343.46 -1.91 -38.75 16 16 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 20 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.15 2.77 10.70 85.09 0.91 3.68 16 25 N -0.50 -11.07 10.26 -188.03 -1.93 -13.00 16 26 H 0.27 -0.17 7.80 -4.42 -0.03 -0.20 16 27 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 28 H 0.16 2.45 7.73 -2.91 -0.02 2.42 16 29 H 0.41 7.30 6.40 -92.71 -0.59 6.70 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.39 8.99 9.05 -74.06 -0.67 8.32 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.38 20.32 7.67 -92.71 -0.71 19.61 16 36 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.18 2.65 6.40 -2.91 -0.02 2.63 16 Total: -1.00 -75.91 337.46 -0.51 -76.42 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.84 Total: 31.14 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.38 Total: 7.92 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -6.07 Total: -128.20 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -2.01 Total: -35.32 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -75.91 -0.51 -76.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497092989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.384 kcal (2) G-P(sol) polarization free energy of solvation -75.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds